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Csor.00g188080 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglestart_codonpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGCCTGCAGGAACTCCATGATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAAAGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTTCACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGA ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGCCTGCAGGAACTCCATGATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAAAGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTTCACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGA ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGCCTGCAGGAACTCCATGATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAAAGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTTCACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGA MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGKGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL Homology
BLAST of Csor.00g188080 vs. ExPASy Swiss-Prot
Match: Q08109 (ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07 Identity = 25/102 (24.51%), Postives = 52/102 (50.98%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 27/87 (31.03%), Postives = 44/87 (50.57%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy Swiss-Prot
Match: Q9C1X4 (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0
BLAST of Csor.00g188080 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 461 bits (1185), Expect = 1.49e-163 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of Csor.00g188080 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 457 bits (1177), Expect = 2.47e-162 Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0
BLAST of Csor.00g188080 vs. NCBI nr
Match: XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 421 bits (1082), Expect = 6.99e-148 Identity = 210/230 (91.30%), Postives = 218/230 (94.78%), Query Frame = 0
BLAST of Csor.00g188080 vs. NCBI nr
Match: XP_023518045.1 (E3 ubiquitin-protein ligase RHA2A-like [Cucurbita pepo subsp. pepo] >XP_023518046.1 E3 ubiquitin-protein ligase RHA2A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 301 bits (772), Expect = 1.48e-101 Identity = 164/232 (70.69%), Postives = 165/232 (71.12%), Query Frame = 0
BLAST of Csor.00g188080 vs. NCBI nr
Match: KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 175 bits (444), Expect = 6.71e-51 Identity = 105/240 (43.75%), Postives = 148/240 (61.67%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 168 bits (425), Expect = 2.30e-48 Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 168 bits (425), Expect = 2.30e-48 Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 159 bits (402), Expect = 6.63e-45 Identity = 95/243 (39.09%), Postives = 141/243 (58.02%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 159 bits (402), Expect = 6.63e-45 Identity = 95/243 (39.09%), Postives = 141/243 (58.02%), Query Frame = 0
BLAST of Csor.00g188080 vs. ExPASy TrEMBL
Match: A0A6J1EKL4 (E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111435522 PE=4 SV=1) HSP 1 Score: 151 bits (382), Expect = 2.99e-42 Identity = 92/208 (44.23%), Postives = 125/208 (60.10%), Query Frame = 0
BLAST of Csor.00g188080 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 4.7e-09 Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = 0
BLAST of Csor.00g188080 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08 Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 0
BLAST of Csor.00g188080 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08 Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = 0
BLAST of Csor.00g188080 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B ) HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08 Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of Csor.00g188080 vs. TAIR 10
Match: AT3G62690.1 (AtL5 ) HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08 Identity = 27/87 (31.03%), Postives = 44/87 (50.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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