Csor.00g187150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g187150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L44
Location	Csor_Chr14: 6403829 .. 6404506 (+)
RNA-Seq Expression	Csor.00g187150
Synteny	Csor.00g187150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCTTCCGACAAGCCCCGACTCCATTTTCTCTTCCGTTGCTTCAGATCTTCCCCCAACGTTCAACGCCAAAAGGCTCACCCGATCGCCTCCCCGAACCGCCGGACTCCGTCGCTTCGTTTTCGATTCAAGAAGTCCTCTGCAACTGTGCCGCTCGACGCCGCCGTACCATGTCACGATGAACTCTCTTTGTCGCCGGAGTTCAATACATCGCCTCCGCCGCCGCTGATTAAAGGCGAAATCATCGTGGATTCGGGCTGTAAGACAATAAAGCCGAGTAAAACTCGGAAGAAATCCGAGTCAACTCAGTCGAATCCGAAATCCGAGTCAACTCAGTCTGATTCCACGGCGGAGAAAAAAACTTCCCCGTCGTTACACTCCGAAAAAGGTTTGAAGAAATCAATCTCTCATCTCCCTACCGCCGCCGCCGCCCTAACTACATCGCTGCCGTCCTCCGACCGCTGGAAACCGCCGACAAATTCCCCAAACAAGAAGTTCGATCTCGTAATTGTAATTGTTGCGGTAGCGATTGTAGTACTGTGGGGACGACTCTGCGCCATACTCTGCACGGCGGCGCTGTTCTACCTCAGACGTTGCCTGAGATCGAAAGCCGAACTGGACGTCGTCGTCGACGGAGGAGGTGCTTTTGGTAGGGTTTCATCAGAGGTTTAG

mRNA sequence

ATGGCGGAATCTTCCGACAAGCCCCGACTCCATTTTCTCTTCCGTTGCTTCAGATCTTCCCCCAACGTTCAACGCCAAAAGGCTCACCCGATCGCCTCCCCGAACCGCCGGACTCCGTCGCTTCGTTTTCGATTCAAGAAGTCCTCTGCAACTGTGCCGCTCGACGCCGCCGTACCATGTCACGATGAACTCTCTTTGTCGCCGGAGTTCAATACATCGCCTCCGCCGCCGCTGATTAAAGGCGAAATCATCGTGGATTCGGGCTGTAAGACAATAAAGCCGAGTAAAACTCGGAAGAAATCCGAGTCAACTCAGTCGAATCCGAAATCCGAGTCAACTCAGTCTGATTCCACGGCGGAGAAAAAAACTTCCCCGTCGTTACACTCCGAAAAAGGTTTGAAGAAATCAATCTCTCATCTCCCTACCGCCGCCGCCGCCCTAACTACATCGCTGCCGTCCTCCGACCGCTGGAAACCGCCGACAAATTCCCCAAACAAGAAGTTCGATCTCGTAATTGTAATTGTTGCGGTAGCGATTGTAGTACTGTGGGGACGACTCTGCGCCATACTCTGCACGGCGGCGCTGTTCTACCTCAGACGTTGCCTGAGATCGAAAGCCGAACTGGACGTCGTCGTCGACGGAGGAGGTGCTTTTGGTAGGGTTTCATCAGAGGTTTAG

Coding sequence (CDS)

ATGGCGGAATCTTCCGACAAGCCCCGACTCCATTTTCTCTTCCGTTGCTTCAGATCTTCCCCCAACGTTCAACGCCAAAAGGCTCACCCGATCGCCTCCCCGAACCGCCGGACTCCGTCGCTTCGTTTTCGATTCAAGAAGTCCTCTGCAACTGTGCCGCTCGACGCCGCCGTACCATGTCACGATGAACTCTCTTTGTCGCCGGAGTTCAATACATCGCCTCCGCCGCCGCTGATTAAAGGCGAAATCATCGTGGATTCGGGCTGTAAGACAATAAAGCCGAGTAAAACTCGGAAGAAATCCGAGTCAACTCAGTCGAATCCGAAATCCGAGTCAACTCAGTCTGATTCCACGGCGGAGAAAAAAACTTCCCCGTCGTTACACTCCGAAAAAGGTTTGAAGAAATCAATCTCTCATCTCCCTACCGCCGCCGCCGCCCTAACTACATCGCTGCCGTCCTCCGACCGCTGGAAACCGCCGACAAATTCCCCAAACAAGAAGTTCGATCTCGTAATTGTAATTGTTGCGGTAGCGATTGTAGTACTGTGGGGACGACTCTGCGCCATACTCTGCACGGCGGCGCTGTTCTACCTCAGACGTTGCCTGAGATCGAAAGCCGAACTGGACGTCGTCGTCGACGGAGGAGGTGCTTTTGGTAGGGTTTCATCAGAGGTTTAG

Protein sequence

MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPCHDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAEKKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV

Homology

[Close]

BLAST of Csor.00g187150 vs. NCBI nr
Match: KAG6581554.1 (hypothetical protein SDJN03_21556, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 427 bits (1099), Expect = 1.31e-150
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60
           MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC
Sbjct: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60

Query: 61  HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE 120
           HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE
Sbjct: 61  HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE 120

Query: 121 KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV 180
           KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV
Sbjct: 121 KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV 180

Query: 181 VLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV 225
           VLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV
Sbjct: 181 VLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV 225

[Close]

BLAST of Csor.00g187150 vs. NCBI nr
Match: XP_022934627.1 (uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934629.1 uncharacterized protein LOC111441760 [Cucurbita moschata])

HSP 1 Score: 421 bits (1081), Expect = 7.28e-148
Identity = 221/225 (98.22%), Postives = 223/225 (99.11%), Query Frame = 0


Query: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60
           MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC
Sbjct: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60

Query: 61  HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE 120
           HDELSLSPEFNT PPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQS+STAE
Sbjct: 61  HDELSLSPEFNTPPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSNSTAE 120

Query: 121 KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV 180
           KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV
Sbjct: 121 KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV 180

Query: 181 VLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV 225
           VLWGRLCAILCTAALFYLRRCLRSKAELDVV+ GGGAFGRVSSEV
Sbjct: 181 VLWGRLCAILCTAALFYLRRCLRSKAELDVVIHGGGAFGRVSSEV 225

[Close]

BLAST of Csor.00g187150 vs. NCBI nr
Match: XP_022982640.1 (uncharacterized protein LOC111481455 [Cucurbita maxima] >XP_022982641.1 uncharacterized protein LOC111481455 [Cucurbita maxima])

HSP 1 Score: 350 bits (899), Expect = 3.66e-120
Identity = 195/227 (85.90%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60
           MAESSDKPRLHFLFRCFRSSPNVQRQKA  IASPNRRTPSLRFRFKK SATVPLDAAVPC
Sbjct: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLDAAVPC 60

Query: 61  HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE 120
           HDELS SPEFNT PPP  IKGEIIVDSGCKTIK SKTRKKSESTQSNP  E         
Sbjct: 61  HDELSFSPEFNTPPPPSPIKGEIIVDSGCKTIKQSKTRKKSESTQSNPTVEKLP----PA 120

Query: 121 KKTSPSLHSEKGLKKSISHLPTAAAAL--TTSLPSSDRWKPPTNSPNKKFDLVIVIVAVA 180
           KKTSPSLHSEKGLKKSISHLP A A    TTSL SSD WK PTNSP  KFDLV VIVAVA
Sbjct: 121 KKTSPSLHSEKGLKKSISHLPIAVADADPTTSLASSDSWKAPTNSPTIKFDLVTVIVAVA 180

Query: 181 IVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV 225
           IVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFG+VSSEV
Sbjct: 181 IVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGKVSSEV 223

[Close]

BLAST of Csor.00g187150 vs. NCBI nr
Match: KAA0052773.1 (60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal protein L44 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 8.88e-50
Identity = 126/246 (51.22%), Postives = 148/246 (60.16%), Query Frame = 0


Query: 1   MAESSDK-----PRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
           MA+SS K         FLF CFRSS  +  +K   IA  NRRT SL FRFKKSSATVP+D
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  AAVPCHDELSLSPEFNTSPP-------PPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNP 120
            A P HDELS SP+F   PP        P + GEI+VDSG +++KPS+TRKK ESTQSN 
Sbjct: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSN- 120

Query: 121 KSESTQSDSTAEKKTSPSLHS----------EKGLKKSIS-HLPTAAAALTTSLPSSDRW 180
               T    +  +K + SLHS          +K  K+S+S HLP A A  TTS   SD  
Sbjct: 121 ---FTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVA--TTSPAFSDGN 180

Query: 181 KPP----TNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVD 219
           KP     TN P K  D VI++V VAI+VLWGRLCAILCT ALFYL R +RS+ E    V 
Sbjct: 181 KPTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEME----VG 236

[Close]

BLAST of Csor.00g187150 vs. NCBI nr
Match: KGN58547.1 (hypothetical protein Csa_002056 [Cucumis sativus])

HSP 1 Score: 169 bits (428), Expect = 1.90e-48
Identity = 128/249 (51.41%), Postives = 149/249 (59.84%), Query Frame = 0


Query: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
           MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKKSSATVP+D
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  AAVPCHDELSLSPEFNTSPP-------PPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNP 120
            A P HDELS  PEF  SPP        P + GEI+VDS   ++KPS+TRKK  STQSN 
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSN- 120

Query: 121 KSESTQSDSTAEKKTSPSLHS----------EKGLKKSIS-HLPTAAAALTTSLPSSDRW 180
               T    +  +KT+  LHS          +K  KK +S HLP A A  TTS   SD  
Sbjct: 121 ---FTTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVA--TTSPAFSDGN 180

Query: 181 KP----PTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVD 222
           KP    PT  P K FD VI++V VAIV+LWGRLCAILCT ALFYL R +RS+ E D    
Sbjct: 181 KPTPKLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPD---G 237

[Close]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL
Match: A0A6J1F3C2 (uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC111441760 PE=4 SV=1)

HSP 1 Score: 421 bits (1081), Expect = 3.52e-148
Identity = 221/225 (98.22%), Postives = 223/225 (99.11%), Query Frame = 0


Query: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60
           MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC
Sbjct: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60

Query: 61  HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE 120
           HDELSLSPEFNT PPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQS+STAE
Sbjct: 61  HDELSLSPEFNTPPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSNSTAE 120

Query: 121 KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV 180
           KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV
Sbjct: 121 KKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRWKPPTNSPNKKFDLVIVIVAVAIV 180

Query: 181 VLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV 225
           VLWGRLCAILCTAALFYLRRCLRSKAELDVV+ GGGAFGRVSSEV
Sbjct: 181 VLWGRLCAILCTAALFYLRRCLRSKAELDVVIHGGGAFGRVSSEV 225

[Close]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL
Match: A0A6J1IZW6 (uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455 PE=4 SV=1)

HSP 1 Score: 350 bits (899), Expect = 1.77e-120
Identity = 195/227 (85.90%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLDAAVPC 60
           MAESSDKPRLHFLFRCFRSSPNVQRQKA  IASPNRRTPSLRFRFKK SATVPLDAAVPC
Sbjct: 1   MAESSDKPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLDAAVPC 60

Query: 61  HDELSLSPEFNTSPPPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTQSDSTAE 120
           HDELS SPEFNT PPP  IKGEIIVDSGCKTIK SKTRKKSESTQSNP  E         
Sbjct: 61  HDELSFSPEFNTPPPPSPIKGEIIVDSGCKTIKQSKTRKKSESTQSNPTVEKLP----PA 120

Query: 121 KKTSPSLHSEKGLKKSISHLPTAAAAL--TTSLPSSDRWKPPTNSPNKKFDLVIVIVAVA 180
           KKTSPSLHSEKGLKKSISHLP A A    TTSL SSD WK PTNSP  KFDLV VIVAVA
Sbjct: 121 KKTSPSLHSEKGLKKSISHLPIAVADADPTTSLASSDSWKAPTNSPTIKFDLVTVIVAVA 180

Query: 181 IVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV 225
           IVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFG+VSSEV
Sbjct: 181 IVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGKVSSEV 223

[Close]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL
Match: A0A5A7UA28 (60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00090 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 4.30e-50
Identity = 126/246 (51.22%), Postives = 148/246 (60.16%), Query Frame = 0


Query: 1   MAESSDK-----PRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
           MA+SS K         FLF CFRSS  +  +K   IA  NRRT SL FRFKKSSATVP+D
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  AAVPCHDELSLSPEFNTSPP-------PPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNP 120
            A P HDELS SP+F   PP        P + GEI+VDSG +++KPS+TRKK ESTQSN 
Sbjct: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSN- 120

Query: 121 KSESTQSDSTAEKKTSPSLHS----------EKGLKKSIS-HLPTAAAALTTSLPSSDRW 180
               T    +  +K + SLHS          +K  K+S+S HLP A A  TTS   SD  
Sbjct: 121 ---FTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVA--TTSPAFSDGN 180

Query: 181 KPP----TNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVD 219
           KP     TN P K  D VI++V VAI+VLWGRLCAILCT ALFYL R +RS+ E    V 
Sbjct: 181 KPTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEME----VG 236

[Close]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL
Match: A0A0A0LCZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1)

HSP 1 Score: 169 bits (428), Expect = 9.19e-49
Identity = 128/249 (51.41%), Postives = 149/249 (59.84%), Query Frame = 0


Query: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
           MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKKSSATVP+D
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  AAVPCHDELSLSPEFNTSPP-------PPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNP 120
            A P HDELS  PEF  SPP        P + GEI+VDS   ++KPS+TRKK  STQSN 
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSN- 120

Query: 121 KSESTQSDSTAEKKTSPSLHS----------EKGLKKSIS-HLPTAAAALTTSLPSSDRW 180
               T    +  +KT+  LHS          +K  KK +S HLP A A  TTS   SD  
Sbjct: 121 ---FTTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVA--TTSPAFSDGN 180

Query: 181 KP----PTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVD 222
           KP    PT  P K FD VI++V VAIV+LWGRLCAILCT ALFYL R +RS+ E D    
Sbjct: 181 KPTPKLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPD---G 237

[Close]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL
Match: A0A6J1GBH7 (uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC111452650 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 7.17e-46
Identity = 123/257 (47.86%), Postives = 149/257 (57.98%), Query Frame = 0


Query: 1   MAESSDKPR-----LHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
           MAE+S+K       LHFL RCF SSP VQ +K       + R PS RFRFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAVP-----CHDELSLSPEFNTSPPPPLIKGEI--IVDSGCKTIKPSKTRKKSESTQSNP 120
            AVP     C D+ S SPEF   PP PLIK     +     + IKPS+  KK+EST+S+ 
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSD- 120

Query: 121 KSESTQSDSTAEKKTSPSLHS----------EKGLKKSISHLPTAAAALTTSLPSSDRWK 180
                    T  K+T+  LHS          +K  KK++SHL   +A  T +  SS+R K
Sbjct: 121 -------FLTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHL---SAVKTPTPTSSERRK 180

Query: 181 P----PTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELD----- 225
           P    P NSP K  DL+IVIVAVAIVVLWG+LCAILCT ALFY  R LRS+ EL+     
Sbjct: 181 PADKPPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEM 240

The following BLAST results are available for this feature:

BLAST of Csor.00g187150 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g187150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581554.1	1.31e-150	100.00	hypothetical protein SDJN03_21556, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934627.1	7.28e-148	98.22	uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 unchar...	[more]
XP_022982640.1	3.66e-120	85.90	uncharacterized protein LOC111481455 [Cucurbita maxima] >XP_022982641.1 uncharac...	[more]
KAA0052773.1	8.88e-50	51.22	60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal p...	[more]
KGN58547.1	1.90e-48	51.41	hypothetical protein Csa_002056 [Cucumis sativus]	[more]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3C2	3.52e-148	98.22	uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1IZW6	1.77e-120	85.90	uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455...	[more]
A0A5A7UA28	4.30e-50	51.22	60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LCZ2	9.19e-49	51.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1	[more]
A0A6J1GBH7	7.17e-46	47.86	uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC1114526...	[more]

BLAST of Csor.00g187150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..122
None	No IPR available	PANTHER	PTHR34379:SF3	PROTEIN, PUTATIVE-RELATED	coord: 5..208
IPR040411	Uncharacterized protein At5g23160-like	PANTHER	PTHR34379	OS07G0553800 PROTEIN	coord: 5..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g187150.m01	Csor.00g187150.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane