Csor.00g187120 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g187120
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	structure-specific endonuclease subunit slx1
Location	Csor_Chr14: 6410352 .. 6413032 (+)
RNA-Seq Expression	Csor.00g187120
Synteny	Csor.00g187120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGGCTGCTCTCTCAGACATTTCGTAGCCAAAAACTCCCAATTTCAAGCCCAGAAGTTTCGAAATCTTCTTCTTCATCAACTAAGGTTCCAACATTGATCGTCAAATCAGAGCCGGAGCCGAAGAAATGGTGCGTTTATCTCATCATCTCCTCCAATCCTCCCATCAAAACCTATGTAGGAGTCACCCTCGACTTTGATCGACGGTATGTCGTATTTCTTCTCTTGCGTTTCTTGTTTGAATCCCAGATTCCATGATTTGGTGTTGAAATTTTTTCTAGGTCGTGTTCGATTTAGCCTTAAAAATTGATATTTCGAGCTTTTAGGTTAAACATTTGGCTTCATATTGTTGAATAATCTGACTCGATCAAACTCACACACCGATGAACCAGAGATTTACGTTCATTCATCCACGGACTGCCACCAATCACAATAATCAAAGTGTATATACAAAGTCTCACTTCCTCTCAAATGCTACTAGGTAAATATAAAATGACACTCAATCTCAATGCCTCTCAACCATCCTAGAAGATCATTTATATAAGCATACAAGATGATTCATGTATCAATATGAGAGATGAACCATATGAATTCCAGTAGGTGTATGCATAGGAGAAGGGAATGTACCAAAAATGTTCATGAATCCGATTCTTTATGTCAATTTACAACCGTTACTAGGTGAATAAGTGCAATTCTTTGAAAAATATGCTCAAATTGTGTCACTTGTTATGGATATAACTTTGTATTGAGTCAATTTGGTGCATAAAGACGAGGTTGGTCTTTGAAAAAGAACTTGGGTTTAGGTGCTGAACTGCTTGATTAATCAGTTGAGGTATTGATTTTCTTTTGAGCTTGTAAGATAGGGAGTGTTTTGGGATCATGCCCACACTGTTGTGAGATATGCTTCAAATTTGCACTTTGCAGCTTTTACATATCCTTTACGCATAAGCGGTATTCAAATATTTCTTAACGTCACGAAGTTGTATTCTTGTACAGTTTAAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAGGCAACTCGAGCGGGGCGACCCTGGATTTGTGCGTGCAAAATTCATGGTTTTAAAGACCAAAGTCAAGGTATCCATTTAAAATAGAATTTCTAGGGCATTGCCTGCCTATTTGTGATTGTAGTCATTCTAGACATTATGTTGCTTAGGGCTCTTGAACAGGTGAGATATTTCCTAGTTTCTTTGTTCTGGTAGTGATCTTCCTAAGTTAGATGTAACAGTCCAAGCCACTGCTAGCACTGTTAGCAGATATTGTTCTCTTTGAACTTTTCTTTTCGGACCAGAACCTTAACCTGACGTCTTTGACCAACTCGGCCATCTAATGGTATCAGAGCCAGACATCGAGCGGTGTGCCAGCGGGGACGCTGACCCCCAAGGGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAAAATTCTCCCTAGCAAACGCGTTTTTAAAACCATGAGGCTTACGACGATATGTAACAGGACAAAGTGGACAATATTTGCTAGTAGTGGACTTGGGCTGTTACATTAGATGTCAATGGTCAGATGTATTTCAGACTTTCTCGTATTGTGAATACTATTTCCGTGAGAAACAATCTTTATTCATTGCTCCACGCTGATATTTATTATAAGATGCATTTTAATCATCATGGATTGATTTAGTTGTGACCAAAGACCATGTAAATAAATGAAGAACTTGAAGAGAATGAGTTCAAATTATGGTGCCGATCCATGTAGAATATTGTACAAGTTACCTAGGCATCCAAATGTCGTAGGGCGAGATTGTTGTCGTGTGAGAATAGCTGAGGTGTGCATAAGTTGTGCTAGTGTGGTAATCTCCCGCTCCCAAATTATATGCATGTTAGGACTCATACCTTCCAAATGGGGCCTTCCATCTTTAGTGTATTTTGATTTGATTTTTTCCCCTGGAAATGAAACAAGCTGCTTGAAAGCCCCCTTGTTTTTTAGTTTTTTTTATTTTATTTATTTTTTATTTATTTATCAAACTGATAAAGGAAAGAAGGTGGGTCGTTATGGCCAATTAGGCAAACCATGCCAATGCACTAGTCAGCCGGTGTGGTGGCGAACACACTGTGCAGGTAGCCTTCTCCGAGACTGTTCAGGAACATAGATCCGTGGCAGCTCACTTGTTGAAGTAGTATCAAGGCAAGGGGCGTCAGTAATGGCCCCACGCGTAGGCGTCTCGACTTGTTGCTTTGAACATTCTTCAAGCTCATATCTCAAGAGCCTGTTTTGACCGGCTTTCTAAGAGCTTAAAAATATGATTGGTTTGACTCAAAACACATCATTCTAAACATGTTTTGCAGTTCTATTTGGACCACCAACCCAATAATCAAATTTCTCTAGAGCTTTCGAACCGAGAAATGTTGGATAAAATCATTCCCACACCTTTACTGATGCTGTTTTCGTGTACTTTGGTATGCAGCTTGTGAGTTTGAATCAAAATGGAAAGAAATTTGCAGGAAAATGTGCCATTTGAGAAAGGAAGAAGTAGATGATGTGACATTAAGGTTGCTGAAGCAAAGGCAGAGAGCTCTGGGAAAAGTGAAAGGTCTGTTTGATTGCACTCAATTTGAGTTTGATTGGGAACTCGATCCCTCCTGA

mRNA sequence

ATGATGAGGCTGCTCTCTCAGACATTTCGTAGCCAAAAACTCCCAATTTCAAGCCCAGAAGTTTCGAAATCTTCTTCTTCATCAACTAAGGTTCCAACATTGATCGTCAAATCAGAGCCGGAGCCGAAGAAATGGTGCGTTTATCTCATCATCTCCTCCAATCCTCCCATCAAAACCTATGTAGGAGTCACCCTCGACTTTGATCGACGTTTAAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAGGCAACTCGAGCGGGGCGACCCTGGATTTGTGCGTGCAAAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAGAAATTTGCAGGAAAATGTGCCATTTGAGAAAGGAAGAAGTAGATGATGTGACATTAAGGTTGCTGAAGCAAAGGCAGAGAGCTCTGGGAAAAGTGAAAGGTCTGTTTGATTGCACTCAATTTGAGTTTGATTGGGAACTCGATCCCTCCTGA

Coding sequence (CDS)

ATGATGAGGCTGCTCTCTCAGACATTTCGTAGCCAAAAACTCCCAATTTCAAGCCCAGAAGTTTCGAAATCTTCTTCTTCATCAACTAAGGTTCCAACATTGATCGTCAAATCAGAGCCGGAGCCGAAGAAATGGTGCGTTTATCTCATCATCTCCTCCAATCCTCCCATCAAAACCTATGTAGGAGTCACCCTCGACTTTGATCGACGTTTAAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAGGCAACTCGAGCGGGGCGACCCTGGATTTGTGCGTGCAAAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAGAAATTTGCAGGAAAATGTGCCATTTGAGAAAGGAAGAAGTAGATGATGTGACATTAAGGTTGCTGAAGCAAAGGCAGAGAGCTCTGGGAAAAGTGAAAGGTCTGTTTGATTGCACTCAATTTGAGTTTGATTGGGAACTCGATCCCTCCTGA

Protein sequence

MMRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMCHLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS

Homology

[Close]

BLAST of Csor.00g187120 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 45  WCVYLIISSNPPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQ 104
           +C YL++S     ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 105 SQACEFESKWK 115
             A +FE  W+
Sbjct: 63  IAALQFEWVWQ 73

[Close]

BLAST of Csor.00g187120 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.0e-12
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 45  WCVYLIISSNPPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKD 104
           +C YL+ S+        Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 105 QSQACEFESKWKEI 117
           +  A +FE  W+ +
Sbjct: 67  KVSALKFEWNWQNL 80

[Close]

BLAST of Csor.00g187120 vs. ExPASy Swiss-Prot
Match: B8MDD1 (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=slx1 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-11
Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 28  STKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRA 87
           +T V    V ++P P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T  
Sbjct: 2   TTTVSEEAVLTKPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTER 61

Query: 88  G--RPWICACKIHGFKDQSQACEFESKWKEICRKMCHLRKEEVDDVTLRLLKQRQRALGK 147
              RPW     + GF  ++ A +FE  W+ +     H+   E D +     K++     K
Sbjct: 62  NTLRPWEMVAIVEGFPSRTGALQFEWSWQHV-HTTRHIGAVETDQLN---RKRKNPPTDK 121

Query: 148 VKGLFDCT 154
             G++  T
Sbjct: 122 GSGIWTST 125

[Close]

BLAST of Csor.00g187120 vs. ExPASy Swiss-Prot
Match: B6QFH5 (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=slx1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 32  PTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--R 91
           P  +   +P P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     R
Sbjct: 6   PADLPSPKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLR 65

Query: 92  PWICACKIHGFKDQSQACEFESKWKEICRKMCHLRKEEVDDVTLR 135
           PW     I GF  ++ A +FE  W+ +     H+   E D +  R
Sbjct: 66  PWEMITIIEGFTSRTGALQFEWSWQHV-HTTRHIGAVETDQLNRR 109

[Close]

BLAST of Csor.00g187120 vs. ExPASy Swiss-Prot
Match: Q4D7L5 (Structure-specific endonuclease subunit SLX1 homolog 1 OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053509453.60 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 46  CVYLIISSNPPI--KTYVGVTLDFDRRLKQHNGEIKGGA-KATRAGRPWICACKIHGFKD 105
           CVYL+ S +P    + Y+G T+D  RRL+QHNGEI  GA +  R GRPW   C + GF +
Sbjct: 7   CVYLLTSLDPQCAGEYYIGYTVDPIRRLRQHNGEIVSGAWRTKRRGRPWELLCCVSGFGE 66

Query: 106 QSQACEFESKWK 115
              A +FE  W+
Sbjct: 67  DRIALKFEWCWQ 78

[Close]

BLAST of Csor.00g187120 vs. NCBI nr
Match: KAG6581557.1 (hypothetical protein SDJN03_21559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337 bits (863), Expect = 1.21e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MMRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTY 60
           MMRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTY
Sbjct: 1   MMRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 120
           VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 120

Query: 121 CHLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 164
           CHLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Sbjct: 121 CHLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 164

[Close]

BLAST of Csor.00g187120 vs. NCBI nr
Match: KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335 bits (859), Expect = 4.75e-116
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 61
           MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 60

Query: 62  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 121
           GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC
Sbjct: 61  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 120

Query: 122 HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 164
           HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Sbjct: 121 HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 163

[Close]

BLAST of Csor.00g187120 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 334 bits (857), Expect = 9.58e-116
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 61
           MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 60

Query: 62  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 121
           GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC
Sbjct: 61  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 120

Query: 122 HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 164
           H+RKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Sbjct: 121 HMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 163

[Close]

BLAST of Csor.00g187120 vs. NCBI nr
Match: XP_023528241.1 (structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324 bits (830), Expect = 1.35e-111
Identity = 160/164 (97.56%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MMRLLSQTFRSQKLPISSPEVSKSSSS-STKVPTLIVKSEPEPKKWCVYLIISSNPPIKT 60
           MMRLLSQTFRSQKLPISS EVSKSSSS STKVPTLIVKSEPEPKKWCVYLIISSNPPIKT
Sbjct: 1   MMRLLSQTFRSQKLPISSSEVSKSSSSASTKVPTLIVKSEPEPKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 120

Query: 121 MCHLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 163
           MCH+RKEEVDD TLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
Sbjct: 121 MCHMRKEEVDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 164

[Close]

BLAST of Csor.00g187120 vs. NCBI nr
Match: XP_022982643.1 (structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 319 bits (817), Expect = 1.21e-109
Identity = 155/162 (95.68%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 61
           MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTL +KSEPE KKWCVYLIISSNPPIKTYV
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSEPETKKWCVYLIISSNPPIKTYV 60

Query: 62  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 121
           GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK+QSQACEFESKWKEICRKM 
Sbjct: 61  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQACEFESKWKEICRKMS 120

Query: 122 HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 163
           H+RKEEVDD TLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
Sbjct: 121 HMRKEEVDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of Csor.00g187120 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 334 bits (857), Expect = 4.64e-116
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 61
           MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 60

Query: 62  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 121
           GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC
Sbjct: 61  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 120

Query: 122 HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 164
           H+RKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Sbjct: 121 HMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS 163

[Close]

BLAST of Csor.00g187120 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 319 bits (817), Expect = 5.85e-110
Identity = 155/162 (95.68%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYV 61
           MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTL +KSEPE KKWCVYLIISSNPPIKTYV
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSEPETKKWCVYLIISSNPPIKTYV 60

Query: 62  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMC 121
           GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK+QSQACEFESKWKEICRKM 
Sbjct: 61  GVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQACEFESKWKEICRKMS 120

Query: 122 HLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 163
           H+RKEEVDD TLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
Sbjct: 121 HMRKEEVDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of Csor.00g187120 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 1.64e-88
Identity = 134/169 (79.29%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPK--KWCVYLIISSNPPIKT 61
           MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+PK  +WCVYLIISSN PIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 62  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 121
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHGFKDQSQACEFESKWK++ RK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 122 MCHLRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 163
           + + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 169

[Close]

BLAST of Csor.00g187120 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 9.13e-88
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTY 61
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 62  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 121
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQSQACEFESKWK++ RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120

Query: 122 CHLRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 163
            + +KE+     +D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Sbjct: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP 168

[Close]

BLAST of Csor.00g187120 vs. ExPASy TrEMBL
Match: A0A6J1DGL6 (structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=LOC111020266 PE=4 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.01e-75
Identity = 121/170 (71.18%), Postives = 136/170 (80.00%), Query Frame = 0


Query: 2   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEPEPKKWCVYLIISSNPPIK 61
           MRLLS TFR  K PIS+P+ S  SSSSTK P   TL  +S+ +PK WCVYLIISSN P K
Sbjct: 33  MRLLSHTFRCHKSPISNPKPS--SSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFK 92

Query: 62  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICR 121
           TYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IHGFKDQSQACEFESKWKE+ R
Sbjct: 93  TYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEVSR 152

Query: 122 KMCHLRK-----EEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 163
           K+ H RK     E+ D+  LRLLK RQRAL KVK +FDC++FEFD +LDP
Sbjct: 153 KIAHKRKKDDEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDGQLDP 200

[Close]

BLAST of Csor.00g187120 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-39
Identity = 86/170 (50.59%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 1   MMRLLSQTFRSQKLPISSPEVS-----KSSSSSTKVPTLIVKSE----PEPKKWCVYLII 60
           M RLLS+TF S KL  S+P+       K+S +   +P+     E    P+ K W VYLI+
Sbjct: 1   MTRLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLIL 60

Query: 61  SSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFES 120
           S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF   SQA  FES
Sbjct: 61  STTEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFES 120

Query: 121 KWKEICRKMCHLRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWEL 162
           KWK   RK+   +K+E    +  LL+ R+RAL KV+   DC+  E DW++
Sbjct: 121 KWKIFTRKLPRRKKDEDMSQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]

BLAST of Csor.00g187120 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 48  YLIISSNPPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQ 107
           YL+ S +P  K  TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     
Sbjct: 31  YLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVS 90

Query: 108 ACEFESKWK 115
           A +FE  W+
Sbjct: 91  ALQFEWAWQ 99

The following BLAST results are available for this feature:

BLAST of Csor.00g187120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6JY16	6.3e-13	47.89	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
Q9P7M3	7.0e-12	43.24	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
B8MDD1	3.5e-11	33.59	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
B6QFH5	1.7e-10	37.14	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
Q4D7L5	1.1e-09	45.83	Structure-specific endonuclease subunit SLX1 homolog 1 OS=Trypanosoma cruzi (str...	[more]

BLAST of Csor.00g187120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581557.1	1.21e-116	100.00	hypothetical protein SDJN03_21559, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018060.1	4.75e-116	100.00	slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022934184.1	9.58e-116	99.39	structure-specific endonuclease subunit slx1 [Cucurbita moschata]	[more]
XP_023528241.1	1.35e-111	97.56	structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo]	[more]
XP_022982643.1	1.21e-109	95.68	structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g187120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1V2	4.64e-116	99.39	structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J5C9	5.85e-110	95.68	structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A0A0LCZ9	1.64e-88	79.29	GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=...	[more]
A0A1S3CFH5	9.13e-88	78.57	structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1DGL6	2.01e-75	71.18	structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of Csor.00g187120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43210.1	4.0e-39	50.59	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	1.1e-09	43.48	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 44..115 e-value: 5.0E-14 score: 52.3
IPR000305	GIY-YIG endonuclease	PROSITE	PS50164	GIY_YIG	coord: 43..128 score: 17.163193
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 39..142 e-value: 3.7E-23 score: 83.4
IPR035901	GIY-YIG endonuclease superfamily	SUPERFAMILY	82771	GIY-YIG endonuclease	coord: 44..120
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 19..163
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 19..163
None	No IPR available	CDD	cd10455	GIY-YIG_SLX1	coord: 45..114 e-value: 3.14855E-35 score: 115.793

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g187120.m01	Csor.00g187120.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity