Csor.00g186990 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g186990
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	Csor_Chr14: 6508614 .. 6512155 (-)
RNA-Seq Expression	Csor.00g186990
Synteny	Csor.00g186990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGTAATTTCACAAACTCTTCCCCCTTTCTCTAACCACTGCAATTTTATCTGTCTCTCACGTTTTCTTCCCCGCTTTTTTGTGATCTTTTCTTCTCCAGGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGTATGACCCTTTTTTGAAAATTTTGAAATTACTGTTTGAAAAGTGAAGTGTTCGGTTTTTATTGGTTTTTTTTTTATATAAGCAGGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGGTCAGTTCATTTTCCTCTTATTTTGGGGTTTTCTCATTCTGATTAGGGTTTAATGGAGCTTTTAATTTGTGGGTTTTATCCCTTTTACTTTGGTGTTTGTTTTGATCTTGAAGGTTCTGTATTGATTTAGCTGTTGAATTTGGTAGTAGATGGTTTTAAGTTCTGATTATTACTCTCTAATGAAGGTTAAATTAACACTTGCTGAGTCTTGTGCTATTCTTATGAGCCTAAATGAGATAGTTTTGGTTCTAAAGAGTCGAAACTCGAGCTAAAGGCAATGCAACTCGGCTTCCCGTTGCCTATTGTCATTAGGATTGTGTAATGAACATTATTAAGATATTAAAAGCACATTAGCAATTAGCCATTGAGCTTGTTATTAGGAGTTTGCCATAAAGAGAGGGGCTGGGGAGGAAGGAGGCAAAGATTTGGCTTGCTTAGGCTTGGGTGAGTGTAACAACCCAAGCACACCGCTAGCAGATATTGTCATCTTTGGGCCTTCCCTTCCAAGCTTCCCCTCAAGGATTTAAAACGCACTGCTAAGGAGAGGTTTCCACACCCTTATAAAGGATGTTTCATTCTCCTCCCCAACCGAAGGGGGTGGATTTGGTGGAGGGCCCCACATTGATTGGAGAAAGGAACGAGTATCAGCGAGTACGCTGGGCCCAAAAGGGGGTGGATTCAATTGGGGAGGAGAACGAAATACCCTTTACAAGGGTGTGGAAATCTTTCCCTAATAGATGCGCTTTAAAAACCTCGAGGGTAAGCTTGAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTAGGCTTGAGCTGCTACAGTCAGAGTATTCAAGAAGGGAGGTCCCAGGTACATTGAAGCAAGCTCTTAAATTCTTTCGAGTAACCCAAATATGCTTGTGTTGCAAAGATGTAATTCCAAGTACCTCTAGTTTTCGATACGGTTTGTTCATGTTATTCGAAACCATTAGGATATCAAAAGCTGGAAAACAAGAAATGAAGTTATTGAACTTCTGGGTTTTTGTTCTTTGTAGTAGTGCCTTTTTTTTTTTTTTATCAAGTTAATCTTCTTCGTGCTAGGCTCGCTACTTATAATCTTCCTATCGAAAAATATTTGGTATTTATATTGGTCGTGCTGAATATTACCTATCATTGGAATTGACCTGTCTATGGTCCGTTACACGTTGCACATACACAAGTGATGGTGGAACCTGAAGTTGGTTTATTCTCTTGAATGCTTCTCATTAGGAGTATCCTTTAAGCAAGGAAACACTATCTAGTCCATCCACCTTATATGTTTGATGGGGTGTTTTATAATATAGTGTTTAAATGATTTAATATTGCTCTAAGAATCCTCCGACTTGCCCGTTTCTTACCTCCATATAAATACGCCTTTACGTTCTTGGATCCATTCGTGACGGTTTAGTGATTAATTGTTTAAGTTTAACTTGACGCGACTTTACTTGTCATGGTTTAGTTATAATTTTTTAGTGAATTACAAACTGGATGGTTATCGCCCTTCTCGATATTCTAGTTTGAAAAGTGCACTTGTATATGATACACCCCCATAAGCTGAAGTTGCATTTGAATGAAGTATTTTTTGAAATTTCTCTCTTAAACATCCAAAGAACGGATTATTTTCTTTATACCGTCCTGTATCAATTTTGTTGGGTTGATATGTATATCAAAACAAACACGAAAAGGTGTGTTAATGCTTTAGGCATGTGGTTGGCGAGAGACTTGCACGTTTTTATTTTACAGTTTTCCTGTTGGGTCAATATGTATATATTTAGCGTTATCTTTCATAAACTGATTATTACTGTTCTTCAGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGTTTGAATTTGCTACTCTCTCTAAACTTAGTTTGAAGATAGAACATGCAATCTTTAACTAATAAATACTCGCAGTGAAAAGTAAAGTGCTGTTGAAATTGATAGCAAATCTAAGGTTAGAAATGATAGTGAGTTGGACAACTTCATTAGAGAAACCAAAAATCGATTCAAATGTGTGATGTCCCACTTTGGTTGGGGAGAACAAACCACCCTTATAAGGGTGTGAAAACCTTCCCCTAGCAGACGTATTTTAAAGCCCGAAAGGGAAAGCCCAAAGAGAACAATATCTACTAGCAATGAATCTGGGCTGTTACAAATGGTATCAGAGCCAGACACTGAACAATGTGCCAACCTTCTCACTGTTTCCTGAAGGAGGGTAGACACGAGGAGGTGTGCCGGTAGGGACACTGGGCCCCAAAGAAGGGTGGATTTGGTGCGAGTCCCACATCGATTGGAGAAAGGACGCTGGCCCAAAGGGTGGTGGATTGTGATGTCCCACCTTGGTTGGGGAGGAGAACAAAAGACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAAACACGTTTTAAAGCCTTGAGGGGAAGCTTGAAAGGGAAAGCCCGAAGAGGACAATATTTGCTAGCGGTGAGTCTGGGTCGTTACAAAATGGCTTTGGAGCTGCACATTTTTGGACTTCTAAAAAAGTAGGTACTTGGAACTGAGACGTAAAAGCTTTGAAACTGTCCTTAAAAACACTGTAAATCTCCTGACTACTTTGTAAGAAAAACCAAAGGTCGAACCAAAAACTGATTCTAAGGAGCTGCAACTTTTCGGACTTTTCAAGGTTAGGTACTTGAAACTGAGACATAAAAGCTTAGAAACTGTTGTTAAAAACACTGTAAACCTCCCGACCCGACTACTTCGTAACAAAAACCAAAAGTCGAATAAAAAACTGATTCGAATTGCTTTCGGAGCTGCAACTTTTCGGACCTTTCAAAGTTAGGGACTTGAAACTCAGACGTAAATGCTAAGAAACGGTTCTTAAAACCATTGTAAATCTCCCGACTACTTCGTAAGAAAAACCAAAAGTCGAACCAAAAATTGATTCAAATTGCTTTTGGAGCTGCAACTTTCCGGACCTTTCAAAGTTAGGGACTTGAAACCGAGACATAAAAGCTTTGAAACTTCTTTCTTGCAGGCTGAGTTCGCAAAGTTCTCAAGGGACTATTGA

mRNA sequence

ATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGCTGAGTTCGCAAAGTTCTCAAGGGACTATTGA

Coding sequence (CDS)

ATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGCTGAGTTCGCAAAGTTCTCAAGGGACTATTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY

Homology

[Close]

BLAST of Csor.00g186990 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.9e-54
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           Y+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+LKN  EAE AKFS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Csor.00g186990 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.9e-26
Identity = 52/111 (46.85%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ F I +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAK 112
           Y++PHPL++ + IRI T + ++P++   +++  L +E   L+N+   +  K
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQK 111

[Close]

BLAST of Csor.00g186990 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-25
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
          MNAP  +E F++ EG KK+  E DTK+ NAA F I +E+HT+GN++R QL +D NVLFAG
Sbjct: 1  MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61 YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKEL 99
          YK+PHPL++K +IRI T +  SP +A+  AI DL  EL
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAEL 98

[Close]

BLAST of Csor.00g186990 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.7e-25
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLK 103
           YK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Csor.00g186990 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.7e-25
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLK 103
           YK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Csor.00g186990 vs. NCBI nr
Match: XP_022935017.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita moschata] >XP_022982567.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita maxima] >XP_023527827.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita pepo subsp. pepo] >KAG6581570.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018077.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (603), Expect = 1.50e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. NCBI nr
Match: XP_011651771.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus] >XP_038903613.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Benincasa hispida] >KGN58584.1 hypothetical protein Csa_002674 [Cucumis sativus])

HSP 1 Score: 229 bits (585), Expect = 8.34e-76
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. NCBI nr
Match: XP_022152550.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia])

HSP 1 Score: 229 bits (584), Expect = 1.18e-75
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDHLKNA EAE AKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. NCBI nr
Match: XP_022949378.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_023525451.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita pepo subsp. pepo] >KAG6606882.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228 bits (582), Expect = 2.39e-75
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELDHL+N  EAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 227 bits (579), Expect = 6.86e-75
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of Csor.00g186990 vs. ExPASy TrEMBL
Match: A0A6J1IWY4 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucurbita maxima OX=3661 GN=LOC111481407 PE=3 SV=1)

HSP 1 Score: 236 bits (603), Expect = 7.24e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. ExPASy TrEMBL
Match: A0A6J1F4E5 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucurbita moschata OX=3662 GN=LOC111442006 PE=3 SV=1)

HSP 1 Score: 236 bits (603), Expect = 7.24e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 4.04e-76
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. ExPASy TrEMBL
Match: A0A6J1DE90 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020248 PE=3 SV=1)

HSP 1 Score: 229 bits (584), Expect = 5.74e-76
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDHLKNA EAE AKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. ExPASy TrEMBL
Match: A0A6J1GBY1 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111452748 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 1.16e-75
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116
           YKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELDHL+N  EAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of Csor.00g186990 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 210.7 bits (535), Expect = 6.3e-55
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           Y+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+LKN  EAE AKFS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Csor.00g186990 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 194.9 bits (494), Expect = 3.6e-50
Identity = 100/146 (68.49%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIR------------------------------IHTASQSSPMQAYNQA 117
           Y+LPHPLKYKII+R                              IHT SQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

The following BLAST results are available for this feature:

BLAST of Csor.00g186990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	8.9e-54	86.21	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	7.9e-26	46.85	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q9VJE4	5.1e-25	55.10	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]
Q32P79	8.7e-25	51.96	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	8.7e-25	51.96	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

BLAST of Csor.00g186990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935017.1	1.50e-78	100.00	DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita moschata] >...	[more]
XP_011651771.1	8.34e-76	95.69	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_022152550.1	1.18e-75	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]	[more]
XP_022949378.1	2.39e-75	94.83	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_02...	[more]
XP_008461807.1	6.86e-75	94.83	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]

BLAST of Csor.00g186990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWY4	7.24e-79	100.00	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucurbita maxima OX...	[more]
A0A6J1F4E5	7.24e-79	100.00	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucurbita moschata ...	[more]
A0A0A0LCD5	4.04e-76	95.69	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810...	[more]
A0A6J1DE90	5.74e-76	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3...	[more]
A0A6J1GBY1	1.16e-75	94.83	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=36...	[more]

BLAST of Csor.00g186990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	6.3e-55	86.21	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	3.6e-50	68.49	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..116
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..111
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..111
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 1.6E-24 score: 85.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..115 e-value: 4.7E-47 score: 160.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..112
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 4.33877E-47 score: 144.657

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g186990.m01	Csor.00g186990.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity