Csor.00g186860 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g186860
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 6606203 .. 6607819 (-)
RNA-Seq ExpressionCsor.00g186860
SyntenyCsor.00g186860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATCTTATATGAAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGTGGGGGGAGTAGTGCTTGTGCAGAGAGATTGATTTAAACTGAAATGAGGGAGTCTCTTATCTTTGTTTGTTTGTTTTCTGAAGTCTCTGTTCCCAATGGAAGTGGGAATGGCATCTCAGTTTTCAACCATCAACTTGTCGGCCAAATAAGGTCCTCTTGTGTTGAAAATGTCAATGGGTCCTTTTTTTAAAAAAATCCTATTTTACAAGTTTGTTTTATTTTGGTTTCTTCAATTTTTTAAATAATCTTTTAACAAACTAGTGATGATCTTTATATTTAATACTCCACTTGTCACGATCTTTTGATTGGGATGGGTGCGGCACTCACTTTCCATTATTAAAATAGAACAATTAAAATTGATTAGGTAGGGAAAAGTTCCTCACTTTCCAACGATTGATGTAGTTTGTGTTATAATTGATTTGAGAAGTACTTTATAAAATAAAATTGATTGATTAAAAAAAATGTTGACAAATTAAAAGATAATCAATACATACGTTACTCTTCATAAACGCATTTCATTAATATGTTAATTTAGGACACGTTACTCTTCATAAACGCATTTCCACTCAAACAACTAATTTCAATTTTAATACATACGCTTTTCTATGTAACACCAATTTCATTTTTTTCTAACCAGATAATAAGCAAAAGCCAAAAGGCTATTAAAAGAGAAAATAAAAATAAATAATTTTTTTTTTAGGAATTCTCAGTAAAATTAAATTTGGTTTATTTAATAATTTTAATAATCATTTTAGTTTTTAATTTCATAATTATTTTTTATTTAAATGAAAAACTCTAAATCAATCCTATCTTTTTTTTTTTATTATTATTTTTATTTTATATAATTTTATTGAGTAAAGATTATTTAGATTTAAAAAAATTGATTGAATTTTAAAAAACATTATTAATTTTCTTTAAAAAAAGTAACAAATATTTAAATAATTTCTTTCCATCCCAAAAATTTTAAGATTGGGAACATCCAATTTGAGATAGTAATAGATTAGGCTATGAAGTAATTAGCAAATGTATGAAAATGGTGAGACAGCTAAGTGTTAATTAAGGATATACATATATATATATATATTATATTATTCAACAATAAAACCACTCATAAACGAAAATTCTTCCCAATATAAATACCAACACCGCACCAACCGATCTCTCAAATTACATCTCACTTCATTTCTTCCCTCATTGCAGGTAGTAGGCCGCGACAGAGAGCAACGAAGCGCCAATGACAGAGCCGATTGCTGGAAGGCCGGCAGCGGCACCGCTGCTTGGTCCAGGTGCTGGAGCCAACGCCTCGTCGTGAGCCACGACGGCGCTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTATTAGGTTTTTTTTCTTTTGTTTTCGGTTTTGGATTTGGATTTGTGCGGCGTTATCCGGTGAAGAACTCGACGAGAAGGATCACCGAAAAACGCCTTCGCTTTGGAAATTGCTGCCTGAGGAAATGA

mRNA sequence

ATGTTGATCTTATATGAAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTAGTAGGCCGCGACAGAGAGCAACGAAGCGCCAATGACAGAGCCGATTGCTGGAAGGCCGGCAGCGGCACCGCTGCTTGGTCCAGGTGCTGGAGCCAACGCCTCGTCGTGAGCCACGACGGCGCTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTATTAGGTTTTTTTTCTTTTGTTTTCGGTTTTGGATTTGGATTTGTGCGGCGTTATCCGGTGAAGAACTCGACGAGAAGGATCACCGAAAAACGCCTTCGCTTTGGAAATTGCTGCCTGAGGAAATGA

Coding sequence (CDS)

ATGTTGATCTTATATGAAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTTCAGACACAGCCACCATGGTAGTAGGCCGCGACAGAGAGCAACGAAGCGCCAATGACAGAGCCGATTGCTGGAAGGCCGGCAGCGGCACCGCTGCTTGGTCCAGGTGCTGGAGCCAACGCCTCGTCGTGAGCCACGACGGCGCTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTATTAGGTTTTTTTTCTTTTGTTTTCGGTTTTGGATTTGGATTTGTGCGGCGTTATCCGGTGAAGAACTCGACGAGAAGGATCACCGAAAAACGCCTTCGCTTTGGAAATTGCTGCCTGAGGAAATGA

Protein sequence

MLILYEDTATMVQTQPPWFRHSHHGSDTATMVVGRDREQRSANDRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHCDLLGFFSFVFGFGFGFVRRYPVKNSTRRITEKRLRFGNCCLRK
Homology
[Close]
BLAST of Csor.00g186860 vs. NCBI nr
Match: KAG6581582.1 (hypothetical protein SDJN03_21584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286 bits (733), Expect = 8.43e-98
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MLILYEDTATMVQTQPPWFRHSHHGSDTATMVVGRDREQRSANDRADCWKAGSGTAAWSR 60
           MLILYEDTATMVQTQPPWFRHSHHGSDTATMVVGRDREQRSANDRADCWKAGSGTAAWSR
Sbjct: 1   MLILYEDTATMVQTQPPWFRHSHHGSDTATMVVGRDREQRSANDRADCWKAGSGTAAWSR 60

Query: 61  CWSQRLVVSHDGADGCGSEEDGAGDLLHLHCDLLGFFSFVFGFGFGFVRRYPVKNSTRRI 120
           CWSQRLVVSHDGADGCGSEEDGAGDLLHLHCDLLGFFSFVFGFGFGFVRRYPVKNSTRRI
Sbjct: 61  CWSQRLVVSHDGADGCGSEEDGAGDLLHLHCDLLGFFSFVFGFGFGFVRRYPVKNSTRRI 120

Query: 121 TEKRLRFGNCCLRK 134
           TEKRLRFGNCCLRK
Sbjct: 121 TEKRLRFGNCCLRK 134

[Close]
BLAST of Csor.00g186860 vs. NCBI nr
Match: KAG6583571.1 (hypothetical protein SDJN03_19503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123 bits (308), Expect = 1.65e-33
Identity = 64/105 (60.95%), Postives = 77/105 (73.33%), Query Frame = 0 

Query: 32  VVGRDREQRSANDRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHC 91
            VGRD EQRSA++RADC K G G+A+WSRCWS+ L++S+DGADGCGSEE+GAGDLLHLHC
Sbjct: 6   TVGRDGEQRSADERADCRKPGGGSASWSRCWSRCLIMSNDGADGCGSEENGAGDLLHLHC 65

Query: 92  DLLGFFSFVFGFGFGFVRRYPV--KNSTRRITEKRLRFGNCCLRK 134
           D L     +FG G      YPV   ++   ITE RLRFG+ CL K
Sbjct: 66  DYL-----LFGCGV-----YPVTMNSNDSTITENRLRFGDRCLMK 100

[Close]
BLAST of Csor.00g186860 vs. NCBI nr
Match: KAG6577525.1 (hypothetical protein SDJN03_25099, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (267), Expect = 2.55e-27
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 32 VVGRDREQRSANDRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHC 91
          VVG D EQRSA++RADCWKA SG A WSRC S+RL++SH G DGCGSEEDGAGDLLH HC
Sbjct: 20 VVGSDGEQRSADERADCWKANSGGAGWSRCRSRRLILSHGGGDGCGSEEDGAGDLLHFHC 79

[Close]
BLAST of Csor.00g186860 vs. NCBI nr
Match: KAG6606874.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (253), Expect = 4.50e-22
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 32  VVGRDREQRSANDRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHC 91
           V GRD EQRSA++RADC KAG G A WSRCWS+ L++S+DGAD CGSEE+GA DLLHLHC
Sbjct: 697 VEGRDGEQRSADERADCRKAGGGAAGWSRCWSRCLIMSNDGADRCGSEENGAVDLLHLHC 756

Query: 92  DLL 94
           D L
Sbjct: 757 DFL 759

The following BLAST results are available for this feature:
BLAST of Csor.00g186860 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g186860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581582.18.43e-98100.00hypothetical protein SDJN03_21584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583571.11.65e-3360.95hypothetical protein SDJN03_19503, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577525.12.55e-2777.05hypothetical protein SDJN03_25099, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6606874.14.50e-2273.02Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Csor.00g186860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g186860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g186860.m01Csor.00g186860.m01mRNA