Csor.00g186440 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g186440
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 6886418 .. 6887973 (+)
RNA-Seq ExpressionCsor.00g186440
SyntenyCsor.00g186440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGGCTATTTCGACAAAAATTGGAAATGGCTACCGATTCATGGCGTTCTGCAAGTTGCTTCACCTCCTCTCCATCTTCCACGTCTCCTACTTCTCAAGTTGCTTCTGGCCTCTCATCACCTTCCGAAAGTTCTTGAACTTCAGGTATCTCCTTCTCTCCCTCTCTCTCTGATGTGCTAGTCTGCTTCGAATGTAGCAATTTATTGGTGCATTTTGCTTGCTAAGCCATATCACAGTGTTCTACGCTGTTAAATCTCGAGGAAGTTAAATTTGGGCGTTTTGTAATTTACAACTATGTTTGTGTACCTGTGCGTGCGTATTTTTAGAATGAATTTAATGATTAAAGTTCCCTTAATAGCTTAAACTTATTGGATTGGGAGATATTTGCAGTGTGGAGATAATTGTTAGTTTGGGATGGCTTTTGAGCAGTTTAACGAAAGTAAAATGCATTTGAAGTGAAAGTTTTCTTATAGAATTTTCATGATCACTTTTGATTTTTTAGCCAAAAACAATGAAAAATTGTAGAAACTACATTTTACCCTTCCAAATTCAACCCGTTCTAATGTTGGAACCCTTGGCAATCTTTGGAGCTTTAGTTGAGTTTTCTTCTTTTTGAAAGAATGAATGGTTGCGTTGTACCAAAATGCAACTATCGGAGTGAAGCACTTGGTGGAGACCAGCCTGATCAAAAGTTTATAGAGATCACAAAGAAAAACTATGTAATTAGGTAAACAAACAAAAGATTAAGATCTTATTTAGTTTTAGGACAGCCTCAAAGAAAGTATAAGGGTAACATTATCTGTTCTCCCAGGATCCATTTGCACCCAACCTTTCTTTTGGAACACTTTCCTGTTTCCAACACTGCCAATGAAACACAGAAAACAAGAGACTACTTTCATCAGTATGTAGGAAGCATTTCGAGCCTTTTTGCTTGTCATTCTTGGGCTCCTTACAATAGACTCTGTTCTGGACATGGGGATTCAATTTTAGAATGCACATTGAATACAAGGAAGATCCTGCAACAAGGGCAAGGCCTCAAAGTTAAATTTGTGAGAAAGTAATCTTGGAAGATCCAAACAATGAATCAATATGAGGACAGTGTGGGCTGCTTCGAGTATCCATTAGCCTGGTAATGACCCCAAGATCAAAACTCTTGAAAATTTCAATGTTATCTCGGTTTGAGCTATTATTTTGCTAATAATTTGAAGAACTACCAGGAGTAAGAGCTTTGCCACCTTTTTTCCTGAAAAAAAAAAAAAAAAAGGAAAAAACTCTTGAAATTTTGGGTTCTCTTCATTATGATGCCAGCTCTTGTTCAAGTCTTCTGGAAACTTGAAATCTAGAAAATGAGTATACTTTCTTTACTTGTAATTCACTTTAACAGCTTAGTTGTTGAGATCGTTAAAAGCCAAGCAGGAACTTTATTCTTGTCAACCTTTTGAAATCCTGTGGATTGTGAATCTGAAATGAAATCCTGTGGATTCTGAAAGGGCTAAAAGGAATCCTAGTATATATTTTCAAGGCCATAACATATATACAGTTGAACGCTAG

mRNA sequence

ATGAGAATGGCTATTTCGACAAAAATTGGAAATGGCTACCGATTCATGGCGTTCTGCAAGTTGCTTCACCTCCTCTCCATCTTCCACGTCTCCTACTTCTCAAGTTGCTTCTGGCCTCTCATCACCTTCCGAAAGTTCTTGAACTTCAGGGCTAAAAGGAATCCTAGTATATATTTTCAAGGCCATAACATATATACAGTTGAACGCTAG

Coding sequence (CDS)

ATGAGAATGGCTATTTCGACAAAAATTGGAAATGGCTACCGATTCATGGCGTTCTGCAAGTTGCTTCACCTCCTCTCCATCTTCCACGTCTCCTACTTCTCAAGTTGCTTCTGGCCTCTCATCACCTTCCGAAAGTTCTTGAACTTCAGGGCTAAAAGGAATCCTAGTATATATTTTCAAGGCCATAACATATATACAGTTGAACGCTAG

Protein sequence

MRMAISTKIGNGYRFMAFCKLLHLLSIFHVSYFSSCFWPLITFRKFLNFRAKRNPSIYFQGHNIYTVER
Homology
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BLAST of Csor.00g186440 vs. NCBI nr
Match: KAG6581624.1 (hypothetical protein SDJN03_21626, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146 bits (369), Expect = 2.53e-44
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MRMAISTKIGNGYRFMAFCKLLHLLSIFHVSYFSSCFWPLITFRKFLNFRAKRNPSIYFQ 60
          MRMAISTKIGNGYRFMAFCKLLHLLSIFHVSYFSSCFWPLITFRKFLNFRAKRNPSIYFQ
Sbjct: 1  MRMAISTKIGNGYRFMAFCKLLHLLSIFHVSYFSSCFWPLITFRKFLNFRAKRNPSIYFQ 60

Query: 61 GHNIYTVER 69
          GHNIYTVER
Sbjct: 61 GHNIYTVER 69

The following BLAST results are available for this feature:
BLAST of Csor.00g186440 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g186440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581624.12.53e-44100.00hypothetical protein SDJN03_21626, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g186440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g186440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g186440.m01Csor.00g186440.m01mRNA