Csor.00g186110 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g186110
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcription elongation factor B polypeptide 3
Location	Csor_Chr14: 13674295 .. 13674873 (+)
RNA-Seq Expression	Csor.00g186110
Synteny	Csor.00g186110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTTGGAGATGTTGGCGAAACCGATCTAAATTTCCTTGAACGTATTTTGCCGCATTGCACCGTCGAGCAACTAATGCGTATAGAGAACTGTTCGAAAGGAAGAGACCTCACTCCAGTAACAAACAAATTATGGAAAACCTTCTACGAAAGAAAGTTTGGTAAAGATGCCGTCAACGGTGTTCTTGAGATGATGAAGCATAAGGAATCGTTCAAATGGAAGCAAATGTACGAGCAGAAGATAAAGGAATTAGAAGAGAAGGCAGTAGAAATTGAGAAACGATATATACAAAACTGCAAGAACGAAAAAGCTCGAAAACAGAGTCGTCAAGTAAAGATATGTGAGATATCGCCGTCGAGTAAGGTTTTGAAGAAGCCAAAAGTACACACAAAAATTTGTCAAGTTTCGTCCGCAAACAATAATAAACGAAGCTACGTGGGAGGAACGAGCAAGATACTGAAAAAAGCCAGAAAAGAAACGTTACAGAGTATAGAGACGAAGAACGCGATAGCTTTTCGTAGAAATGCAGTTCAAAAGTAG

mRNA sequence

ATGTCTCAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTTGGAGATGTTGGCGAAACCGATCTAAATTTCCTTGAACGTATTTTGCCGCATTGCACCGTCGAGCAACTAATGCGTATAGAGAACTGTTCGAAAGGAAGAGACCTCACTCCAGTAACAAACAAATTATGGAAAACCTTCTACGAAAGAAAGTTTGGTAAAGATGCCGTCAACGGTGTTCTTGAGATGATGAAGCATAAGGAATCGTTCAAATGGAAGCAAATGTACGAGCAGAAGATAAAGGAATTAGAAGAGAAGGCAGTAGAAATTGAGAAACGATATATACAAAACTGCAAGAACGAAAAAGCTCGAAAACAGAGTCGTCAAGTAAAGATATGTGAGATATCGCCGTCGAGTAAGGTTTTGAAGAAGCCAAAAGTACACACAAAAATTTGTCAAGTTTCGTCCGCAAACAATAATAAACGAAGCTACGTGGGAGGAACGAGCAAGATACTGAAAAAAGCCAGAAAAGAAACGTTACAGAGTATAGAGACGAAGAACGCGATAGCTTTTCGTAGAAATGCAGTTCAAAAGTAG

Coding sequence (CDS)

ATGTCTCAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTTGGAGATGTTGGCGAAACCGATCTAAATTTCCTTGAACGTATTTTGCCGCATTGCACCGTCGAGCAACTAATGCGTATAGAGAACTGTTCGAAAGGAAGAGACCTCACTCCAGTAACAAACAAATTATGGAAAACCTTCTACGAAAGAAAGTTTGGTAAAGATGCCGTCAACGGTGTTCTTGAGATGATGAAGCATAAGGAATCGTTCAAATGGAAGCAAATGTACGAGCAGAAGATAAAGGAATTAGAAGAGAAGGCAGTAGAAATTGAGAAACGATATATACAAAACTGCAAGAACGAAAAAGCTCGAAAACAGAGTCGTCAAGTAAAGATATGTGAGATATCGCCGTCGAGTAAGGTTTTGAAGAAGCCAAAAGTACACACAAAAATTTGTCAAGTTTCGTCCGCAAACAATAATAAACGAAGCTACGTGGGAGGAACGAGCAAGATACTGAAAAAAGCCAGAAAAGAAACGTTACAGAGTATAGAGACGAAGAACGCGATAGCTTTTCGTAGAAATGCAGTTCAAAAGTAG

Protein sequence

MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETKNAIAFRRNAVQK

Homology

[Close]

BLAST of Csor.00g186110 vs. NCBI nr
Match: KAG6582092.1 (hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370 bits (950), Expect = 5.49e-129
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT
Sbjct: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ
Sbjct: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120

Query: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180
           SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK
Sbjct: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180

Query: 181 NAIAFRRNAVQK 192
           NAIAFRRNAVQK
Sbjct: 181 NAIAFRRNAVQK 192

[Close]

BLAST of Csor.00g186110 vs. NCBI nr
Match: XP_022979565.1 (uncharacterized protein LOC111479243 [Cucurbita maxima])

HSP 1 Score: 346 bits (888), Expect = 1.56e-119
Identity = 180/192 (93.75%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MSQQVNKAIDSLRFLGDVG+TDLNFLE ILPHCTVEQLMRIEN SKGRDLTPVTNKLWKT
Sbjct: 1   MSQQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYERKFGKDAVNGVLEMMKHKESFKWKQMYE KIKELEEKAVEIEKRYIQNC+NEKARKQ
Sbjct: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQ 120

Query: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180
           SRQVKICEISPSSKVLKK KVHTK CQVSSA+N+KRSY+GGTSKILKKARKETLQSIETK
Sbjct: 121 SRQVKICEISPSSKVLKKSKVHTKFCQVSSAHNDKRSYLGGTSKILKKARKETLQSIETK 180

Query: 181 NAIAFRRNAVQK 192
           N IAFRRN VQK
Sbjct: 181 NVIAFRRNTVQK 192

[Close]

BLAST of Csor.00g186110 vs. NCBI nr
Match: XP_023526910.1 (uncharacterized protein LOC111790279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343 bits (880), Expect = 2.67e-118
Identity = 181/193 (93.78%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MSQQVNKAIDSLRFL DVGETDLNFLE ILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT
Sbjct: 1   MSQQVNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYERKFGKDAVN V+EMMKHKESFKWKQMYE K KELEEKAVEIEKRYIQNC NEKARKQ
Sbjct: 61  FYERKFGKDAVNSVIEMMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQ 120

Query: 121 SRQVKICEISP-SSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIET 180
           SRQVKICEISP SSKVLKKPKV TK+CQVSS  NNKRSYVGGTSKILKKARKETLQSIET
Sbjct: 121 SRQVKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIET 180

Query: 181 KNAIAFRRNAVQK 192
           KNAIAFRRNAVQK
Sbjct: 181 KNAIAFRRNAVQK 193

[Close]

BLAST of Csor.00g186110 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 340 bits (871), Expect = 6.07e-117
Identity = 171/192 (89.06%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MS+QVNKAIDSLRFLGDVG+TDLNFLE ILPHCTV+QLM IENCSKGRDLTP+TNKLWKT
Sbjct: 1   MSEQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYERKFGKD VN V++ MKHKESF+WKQMYE KIKELE+KAVE+EKRYI+NC+NEKARKQ
Sbjct: 61  FYERKFGKDDVNCVVDRMKHKESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQ 120

Query: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180
           SRQVKICEISPSSKVLKKPKVHTK+CQVSSANNNKRSY+GGTSKILKKARKETLQSIETK
Sbjct: 121 SRQVKICEISPSSKVLKKPKVHTKVCQVSSANNNKRSYLGGTSKILKKARKETLQSIETK 180

Query: 181 NAIAFRRNAVQK 192
           N IAFRRNA+QK
Sbjct: 181 NLIAFRRNAIQK 192

[Close]

BLAST of Csor.00g186110 vs. NCBI nr
Match: KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333 bits (853), Expect = 3.37e-114
Identity = 171/192 (89.06%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MS+QVNKAIDSLRFLGDVG+ DLNFLE ILPHCTV+QLM IENCSKGRDLTPVTNKLWKT
Sbjct: 1   MSEQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYE+KFG+D VNGVLE MKHKESF+WKQMYE K+KELEEKAVEIEKRYIQNC+NEK RKQ
Sbjct: 61  FYEKKFGEDGVNGVLERMKHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQ 120

Query: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180
           SRQVKICEISPSSKVLKKPKV TKICQVSSA NNKRSY GGTSKILKKARKET QSIETK
Sbjct: 121 SRQVKICEISPSSKVLKKPKVQTKICQVSSATNNKRSYGGGTSKILKKARKETRQSIETK 180

Query: 181 NAIAFRRNAVQK 192
           N IAFRRNA+QK
Sbjct: 181 NLIAFRRNAIQK 192

[Close]

BLAST of Csor.00g186110 vs. ExPASy TrEMBL
Match: A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)

HSP 1 Score: 346 bits (888), Expect = 7.54e-120
Identity = 180/192 (93.75%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MSQQVNKAIDSLRFLGDVG+TDLNFLE ILPHCTVEQLMRIEN SKGRDLTPVTNKLWKT
Sbjct: 1   MSQQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYERKFGKDAVNGVLEMMKHKESFKWKQMYE KIKELEEKAVEIEKRYIQNC+NEKARKQ
Sbjct: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQ 120

Query: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180
           SRQVKICEISPSSKVLKK KVHTK CQVSSA+N+KRSY+GGTSKILKKARKETLQSIETK
Sbjct: 121 SRQVKICEISPSSKVLKKSKVHTKFCQVSSAHNDKRSYLGGTSKILKKARKETLQSIETK 180

Query: 181 NAIAFRRNAVQK 192
           N IAFRRN VQK
Sbjct: 181 NVIAFRRNTVQK 192

[Close]

BLAST of Csor.00g186110 vs. ExPASy TrEMBL
Match: A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 2.94e-117
Identity = 171/192 (89.06%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MSQQVNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           MS+QVNKAIDSLRFLGDVG+TDLNFLE ILPHCTV+QLM IENCSKGRDLTP+TNKLWKT
Sbjct: 1   MSEQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKT 60

Query: 61  FYERKFGKDAVNGVLEMMKHKESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQ 120
           FYERKFGKD VN V++ MKHKESF+WKQMYE KIKELE+KAVE+EKRYI+NC+NEKARKQ
Sbjct: 61  FYERKFGKDDVNCVVDRMKHKESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQ 120

Query: 121 SRQVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETK 180
           SRQVKICEISPSSKVLKKPKVHTK+CQVSSANNNKRSY+GGTSKILKKARKETLQSIETK
Sbjct: 121 SRQVKICEISPSSKVLKKPKVHTKVCQVSSANNNKRSYLGGTSKILKKARKETLQSIETK 180

Query: 181 NAIAFRRNAVQK 192
           N IAFRRNA+QK
Sbjct: 181 NLIAFRRNAIQK 192

[Close]

BLAST of Csor.00g186110 vs. ExPASy TrEMBL
Match: A0A6J1D807 (transcription elongation factor B polypeptide 3 OS=Momordica charantia OX=3673 GN=LOC111018119 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 4.88e-52
Identity = 105/199 (52.76%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           VN AID+LRFLGDVGETD++ LERILPHCT++QLM +E  SKGRDLTPVT+KLWK FYER
Sbjct: 15  VNTAIDNLRFLGDVGETDIHLLERILPHCTLDQLMHVEKSSKGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDAVNGVLEMMKHKE-SFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124
           +FGKD+ N V+  M+ K+ SF+W Q+YE K+++LE+    +  R  Q  KNE ARKQ RQ
Sbjct: 75  QFGKDSTNAVIARMQQKKVSFRWLQLYEAKLEDLEKNESIVADRIKQCYKNEDARKQKRQ 134

Query: 125 VKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGT----------SKILKKARKET 184
           ++IC   P S                   +NKRS+ GGT          + +LKKA+ E 
Sbjct: 135 IQICNKVPPS-------------------SNKRSF-GGTGFGYNVSNTKNNLLKKAKIEV 193

Query: 185 LQSIETKNAIAFRRNAVQK 192
           LQS E KN  A+RRNAVQK
Sbjct: 195 LQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Csor.00g186110 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.15e-50
Identity = 101/198 (51.01%), Postives = 131/198 (66.16%), Query Frame = 0


Query: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           VNKAID++RFLGDVGETD++ LERILPHCTV+QLM +E  S+GRDLTPVT+KLWK FYER
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDAVNGVLEMMKHKE-SFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124
           +FGK++   V+E M+ K  +F+W Q+YE K++++E+   +   R  Q+   E ARKQSRQ
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 125 VKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGG---------TSKILKKARKETL 184
           ++IC   P S                   +NKRS+ G           +KILKKA+ E L
Sbjct: 135 IQICSKVPPS-------------------SNKRSFGGSGYGYNVANTKNKILKKAKIEVL 193

Query: 185 QSIETKNAIAFRRNAVQK 192
           QS E KN  A+RRNAVQK
Sbjct: 195 QSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Csor.00g186110 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.55e-50
Identity = 101/198 (51.01%), Postives = 131/198 (66.16%), Query Frame = 0


Query: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           VNKAID++RFLGDVGETD++ LERILPHCTV+QLM +E  S+GRDLTPVT+KLWK FYER
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDAVNGVLEMMKHKE-SFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124
           +FGK++   V+E M+ K  +F+W Q+YE K++++E+   +   R  Q+   E ARKQSRQ
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 125 VKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGG---------TSKILKKARKETL 184
           ++IC   P S                   +NKRS+ G           +KILKKA+ E L
Sbjct: 135 IQICSKVPPS-------------------SNKRSFGGSGYGYNVANTKNKILKKAKIEVL 193

Query: 185 QSIETKNAIAFRRNAVQK 192
           QS E KN  A+RRNAVQK
Sbjct: 195 QSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Csor.00g186110 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 72/190 (37.89%), Postives = 116/190 (61.05%), Query Frame = 0


Query: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           V KAID+++++G VG  D   LE+IL HCT+EQL  IE+ +   DL+P+T+K WK FY++
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 65  KFGKDAVNGVLEMMKHKE--SFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSR 124
            +G++ +  ++E ++  +   FKW+ +YE K+  +++K  E+  R  +  K+E  RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 125 QVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETKNA 184
           Q K+C  +P SK         +    +SA+     +V   S I+KKA+ + L+S E KN 
Sbjct: 138 QTKVCSKAPPSK---------RPFWGNSASGYNLGHV--KSNIMKKAKIDLLKSQEVKNL 196

Query: 185 IAFRRNAVQK 193
            A +RN +QK
Sbjct: 198 TAIKRNTIQK 196

[Close]

BLAST of Csor.00g186110 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 72/190 (37.89%), Postives = 116/190 (61.05%), Query Frame = 0


Query: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           V KAID+++++G VG  D   LE+IL HCT+EQL  IE+ +   DL+P+T+K WK FY++
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 65  KFGKDAVNGVLEMMKHKE--SFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSR 124
            +G++ +  ++E ++  +   FKW+ +YE K+  +++K  E+  R  +  K+E  RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 125 QVKICEISPSSKVLKKPKVHTKICQVSSANNNKRSYVGGTSKILKKARKETLQSIETKNA 184
           Q K+C  +P SK         +    +SA+     +V   S I+KKA+ + L+S E KN 
Sbjct: 138 QTKVCSKAPPSK---------RPFWGNSASGYNLGHV--KSNIMKKAKIDLLKSQEVKNL 196

Query: 185 IAFRRNAVQK 193
            A +RN +QK
Sbjct: 198 TAIKRNTIQK 196

The following BLAST results are available for this feature:

BLAST of Csor.00g186110 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g186110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582092.1	5.49e-129	100.00	hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022979565.1	1.56e-119	93.75	uncharacterized protein LOC111479243 [Cucurbita maxima]	[more]
XP_023526910.1	2.67e-118	93.78	uncharacterized protein LOC111790279 [Cucurbita pepo subsp. pepo]	[more]
XP_022979571.1	6.07e-117	89.06	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
KAG6582214.1	3.37e-114	89.06	hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g186110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ITM2	7.54e-120	93.75	uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243...	[more]
A0A6J1IR58	2.94e-117	89.06	uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252...	[more]
A0A6J1D807	4.88e-52	52.76	transcription elongation factor B polypeptide 3 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3BGR1	1.15e-50	51.01	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	1.55e-50	51.01	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of Csor.00g186110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	1.7e-28	37.89	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	1.7e-28	37.89	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..114
None	No IPR available	GENE3D	6.10.250.3180		coord: 11..120 e-value: 2.5E-20 score: 74.5
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 5..192
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 16..123 e-value: 2.8E-22 score: 79.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g186110.m01	Csor.00g186110.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus