Csor.00g185270 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g185270
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	UPF0481 protein At3g47200-like
Location	Csor_Chr14: 14182947 .. 14183261 (+)
RNA-Seq Expression	Csor.00g185270
Synteny	Csor.00g185270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCACCTTCTCCAGTCAGATCAAGACGTGAAGATTCTCTATAGAAGAAAAATCCTAAACGATCAGGAGGACGACGAGGAGCAGATTATTCGAAATCTGAAATGGATGAGCGAGAGGGAAAGCTTATCGGGAACGTACTTTGCCGGCATTGTTCAGAAACTAAACGAGAAGCCGGACCGATGCGTCGCACGGTGGCGGAAGTTGAGAAGGAATCCAGTGGCCATCGGCATCGTCGCCGTTTTGGTGGTGGTTGTGATCTTCGTCGCGGCCTTCTTCTCTGCATTTTCAGTACTTCAGCGTCGTTACAAATGA

mRNA sequence

ATGAGCCACCTTCTCCAGTCAGATCAAGACGTGAAGATTCTCTATAGAAGAAAAATCCTAAACGATCAGGAGGACGACGAGGAGCAGATTATTCGAAATCTGAAATGGATGAGCGAGAGGGAAAGCTTATCGGGAACGTACTTTGCCGGCATTGTTCAGAAACTAAACGAGAAGCCGGACCGATGCGTCGCACGGTGGCGGAAGTTGAGAAGGAATCCAGTGGCCATCGGCATCGTCGCCGTTTTGGTGGTGGTTGTGATCTTCGTCGCGGCCTTCTTCTCTGCATTTTCAGTACTTCAGCGTCGTTACAAATGA

Coding sequence (CDS)

ATGAGCCACCTTCTCCAGTCAGATCAAGACGTGAAGATTCTCTATAGAAGAAAAATCCTAAACGATCAGGAGGACGACGAGGAGCAGATTATTCGAAATCTGAAATGGATGAGCGAGAGGGAAAGCTTATCGGGAACGTACTTTGCCGGCATTGTTCAGAAACTAAACGAGAAGCCGGACCGATGCGTCGCACGGTGGCGGAAGTTGAGAAGGAATCCAGTGGCCATCGGCATCGTCGCCGTTTTGGTGGTGGTTGTGATCTTCGTCGCGGCCTTCTTCTCTGCATTTTCAGTACTTCAGCGTCGTTACAAATGA

Protein sequence

MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPDRCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK

Homology

[Close]

BLAST of Csor.00g185270 vs. NCBI nr
Match: KAG6582175.1 (hypothetical protein SDJN03_22177, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (500), Expect = 3.20e-63
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 60
           MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD
Sbjct: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 60

Query: 61  RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK
Sbjct: 61  RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104

[Close]

BLAST of Csor.00g185270 vs. NCBI nr
Match: KAG7018572.1 (UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197 bits (500), Expect = 4.60e-59
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 60
           MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD
Sbjct: 328 MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 387

Query: 61  RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK
Sbjct: 388 RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 431

[Close]

BLAST of Csor.00g185270 vs. NCBI nr
Match: XP_022955709.1 (UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955710.1 UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955711.1 UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955712.1 UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955713.1 UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955714.1 UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955716.1 UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 194 bits (494), Expect = 3.62e-58
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 60
           MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD
Sbjct: 328 MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 387

Query: 61  RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           RCVARWRKLRR PVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK
Sbjct: 388 RCVARWRKLRRTPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 431

[Close]

BLAST of Csor.00g185270 vs. NCBI nr
Match: XP_023526431.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526432.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526433.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526435.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526436.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526437.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526438.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526439.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (488), Expect = 2.85e-57
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 60
           MSHLLQSDQDVKILYRRKIL DQEDDEEQIIRNLKWMSE+ESLSGTYFAGIVQKLNEKPD
Sbjct: 328 MSHLLQSDQDVKILYRRKILIDQEDDEEQIIRNLKWMSEKESLSGTYFAGIVQKLNEKPD 387

Query: 61  RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK
Sbjct: 388 RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 431

[Close]

BLAST of Csor.00g185270 vs. NCBI nr
Match: XP_038880915.1 (UPF0481 protein At3g47200-like [Benincasa hispida])

HSP 1 Score: 162 bits (411), Expect = 8.13e-46
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWM-SERESLSGTYFAGIVQKLNEKP 60
           MSHLLQSD+DVKIL RRKIL D EDDEEQII+NLKWM  E+ESLSGTYFAGIVQKLNEKP
Sbjct: 328 MSHLLQSDEDVKILCRRKILIDLEDDEEQIIQNLKWMREEKESLSGTYFAGIVQKLNEKP 387

Query: 61  DRCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           DRC+ +WR LRRNPVAIG+ AV VVVVIFVAAFFSA S+LQRRYK
Sbjct: 388 DRCLTQWRGLRRNPVAIGVAAVWVVVVIFVAAFFSAISLLQRRYK 432

[Close]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL
Match: A0A6J1GVU1 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111457630 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 1.75e-58
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 60
           MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD
Sbjct: 328 MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPD 387

Query: 61  RCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           RCVARWRKLRR PVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK
Sbjct: 388 RCVARWRKLRRTPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 431

[Close]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL
Match: A0A5D3CXY5 (UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001490 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.11e-45
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSE-RESLSGTYFAGIVQKLNEKP 60
           MSHLLQSD DVKIL R+KIL   EDDEEQII NLKW+ E +ESLSGTYFAGIVQKLNEKP
Sbjct: 1   MSHLLQSDGDVKILCRKKILYALEDDEEQIIENLKWIREQKESLSGTYFAGIVQKLNEKP 60

Query: 61  DRCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           DR V RWR+LRR P AIG+ AVL+VVVIF AAFF+AFS+LQRRYK
Sbjct: 61  DRSVVRWRRLRRKPTAIGVAAVLMVVVIFGAAFFAAFSILQRRYK 105

[Close]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL
Match: A0A1S3AY98 (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103483890 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 5.71e-41
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSE-RESLSGTYFAGIVQKLNEKP 60
           MSHLLQSD DVKIL R+KIL   EDDEEQII NLKW+ E +ESLSGTYFAGIVQKLNEKP
Sbjct: 328 MSHLLQSDGDVKILCRKKILYALEDDEEQIIENLKWIREQKESLSGTYFAGIVQKLNEKP 387

Query: 61  DRCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           DR V RWR+LRR P AIG+ A L+VVVIF AAFF+AFS+LQRRYK
Sbjct: 388 DRSVVRWRRLRRKPTAIGVAADLMVVVIFGAAFFAAFSILQRRYK 432

[Close]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL
Match: A0A0A0L821 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G166290 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 6.86e-38
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSE-RESLSGTYFAGIVQKLNEKP 60
           MSHLLQSD+DVKIL R+KILN  +D+EEQII  LKW+ E ++SLSGT+FAGIVQKL EKP
Sbjct: 328 MSHLLQSDEDVKILCRKKILNALKDEEEQIIEKLKWIREQKDSLSGTFFAGIVQKLKEKP 387

Query: 61  DRCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           DR VARWR+LR N  AI +  VL+VVVIF AAFF+AFSVLQRRYK
Sbjct: 388 DRSVARWRRLRSNSTAISVATVLMVVVIFGAAFFAAFSVLQRRYK 432

[Close]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL
Match: A0A6J1CA62 (UPF0481 protein At3g47200-like OS=Momordica charantia OX=3673 GN=LOC111009362 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 2.02e-36
Identity = 74/105 (70.48%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERES-LSGTYFAGIVQKLNEKP 60
           MSHLLQSD+D+K+L  RKIL + E DE QII NLKWM ++++ LSGTYFAG+VQKLNE P
Sbjct: 329 MSHLLQSDEDMKLLCGRKILINLEKDETQIIANLKWMRQQKANLSGTYFAGVVQKLNEPP 388

Query: 61  DRCVARWRKLRRNPVAIGIVAVLVVVVIFVAAFFSAFSVLQRRYK 104
           DR +  WR+LRRNPVAIG+VAV  +VVIFVAAFFSA S+LQRRY+
Sbjct: 389 DRFIVWWRRLRRNPVAIGVVAVWALVVIFVAAFFSALSLLQRRYR 433

The following BLAST results are available for this feature:

BLAST of Csor.00g185270 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g185270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582175.1	3.20e-63	100.00	hypothetical protein SDJN03_22177, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018572.1	4.60e-59	100.00	UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022955709.1	3.62e-58	99.04	UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022955710.1 UPF0481 prot...	[more]
XP_023526431.1	2.85e-57	98.08	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo] >XP_023526432.1 UPF0...	[more]
XP_038880915.1	8.13e-46	83.81	UPF0481 protein At3g47200-like [Benincasa hispida]	[more]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVU1	1.75e-58	99.04	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111457630 PE=...	[more]
A0A5D3CXY5	1.11e-45	79.05	UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G0014...	[more]
A0A1S3AY98	5.71e-41	78.10	UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103483890 PE=4 SV=1	[more]
A0A0A0L821	6.86e-38	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G166290 PE=4 SV=1	[more]
A0A6J1CA62	2.02e-36	70.48	UPF0481 protein At3g47200-like OS=Momordica charantia OX=3673 GN=LOC111009362 PE...	[more]

BLAST of Csor.00g185270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 1..87 e-value: 4.3E-6 score: 26.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g185270.m01	Csor.00g185270.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane