Csor.00g184090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g184090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosystem I reaction center subunit II, chloroplastic
Location	Csor_Chr14: 14829139 .. 14829759 (+)
RNA-Seq Expression	Csor.00g184090
Synteny	Csor.00g184090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCGCCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCTCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

mRNA sequence

ATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCGCCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCTCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

Coding sequence (CDS)

ATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCGCCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCTCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

Protein sequence

MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

[Close]

BLAST of Csor.00g184090 vs. ExPASy Swiss-Prot
Match: P32869 (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 9.1e-102
Identity = 188/206 (91.26%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MA QATLFTPSLSTPKS  ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE  + E
Sbjct: 3   MATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TSVE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRE 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g184090 vs. ExPASy Swiss-Prot
Match: P12372 (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-86
Identity = 168/209 (80.38%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MA QA+LFTP LS PKS   T PWKQ S +SF   K L    + +R ++  AE   AATE
Sbjct: 3   MATQASLFTPPLSVPKS--TTAPWKQ-SLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATE 62

Query: 61  ---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
              APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 63  EKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 122

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 123 MRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 182

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           EGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 183 EGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of Csor.00g184090 vs. ExPASy Swiss-Prot
Match: P29302 (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-83
Identity = 161/207 (77.78%), Postives = 176/207 (85.02%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSA-EAEAAAT 60
           MA QA+LFTP+LS PKS+A   PWKQS  L+  + K L    ++ R ++  A EA     
Sbjct: 3   MATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATKEA 62

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 63  EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 122

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           +G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+G
Sbjct: 123 EGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQG 182

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 183 VGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of Csor.00g184090 vs. ExPASy Swiss-Prot
Match: P12353 (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 163/215 (75.81%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MAAQATLFTP---SLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE-- 60
           MA QATLF+P   S + P    +T  +KQ S ++F +     KPA+    ++ +A AE  
Sbjct: 3   MATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAEGK 62

Query: 61  -AAAT---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 120
            AAAT   EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct: 63  AAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 122

Query: 121 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 180
           TGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPE
Sbjct: 123 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPE 182

Query: 181 KVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           KVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 183 KVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of Csor.00g184090 vs. ExPASy Swiss-Prot
Match: Q9SA56 (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-76
Identity = 155/211 (73.46%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MAAQAT-LFTPSLSTPKSAAVTIPWKQSS----TLSFINSKPLIKPAASSRIVKVSAEAE 60
           MA QA  +F+P+++T  SA   +    SS    +LSF  +K  I+   +      S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF--TKTAIRAEKTE-----SSSAA 60

Query: 61  AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Csor.00g184090 vs. NCBI nr
Match: KAG6582291.1 (Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1027), Expect = 2.91e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE
Sbjct: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206

[Close]

BLAST of Csor.00g184090 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 398 bits (1023), Expect = 1.27e-139
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSLSTPKS AVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE
Sbjct: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g184090 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima])

HSP 1 Score: 396 bits (1018), Expect = 7.36e-139
Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSLSTPKS AVTIPWKQSSTL FINSKPLIKPAASSRIVKVSAEAEAAATE
Sbjct: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAATE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g184090 vs. NCBI nr
Match: KAG7018694.1 (Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 395 bits (1015), Expect = 2.19e-138
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA-T 60
           MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA T
Sbjct: 3   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAAT 62

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 63  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 122

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 123 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 182

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 206
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 VGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of Csor.00g184090 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394 bits (1011), Expect = 8.91e-138
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA-T 60
           MAAQATLFTPSLSTPKS AVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA T
Sbjct: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAAT 62

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 63  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 122

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 123 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 182

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 206
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 VGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of Csor.00g184090 vs. ExPASy TrEMBL
Match: A0A6J1GWF9 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457767 PE=3 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 6.16e-140
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSLSTPKS AVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE
Sbjct: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g184090 vs. ExPASy TrEMBL
Match: A0A6J1INM6 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479135 PE=3 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 3.56e-139
Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSLSTPKS AVTIPWKQSSTL FINSKPLIKPAASSRIVKVSAEAEAAATE
Sbjct: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAATE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g184090 vs. ExPASy TrEMBL
Match: A0A6J1ICA2 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474178 PE=3 SV=1)

HSP 1 Score: 374 bits (959), Expect = 3.39e-130
Identity = 192/206 (93.20%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSL+TPKS A  +PWKQS TLSF+N+KPL   A+SSR+VKVSAEAEAAA E
Sbjct: 3   MAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPL-NLASSSRLVKVSAEAEAAAAE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g184090 vs. ExPASy TrEMBL
Match: A0A6J1F7T5 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441652 PE=3 SV=1)

HSP 1 Score: 370 bits (951), Expect = 5.63e-129
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MAAQATLFTPSL+TPKS A  + WKQS TLSF+N+KPL   A+SSR+VKVSAEAEAAA E
Sbjct: 3   MAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRLVKVSAEAEAAAAE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ
Sbjct: 63  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g184090 vs. ExPASy TrEMBL
Match: A0A5D3D399 (Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00340 PE=3 SV=1)

HSP 1 Score: 369 bits (947), Expect = 2.29e-128
Identity = 189/206 (91.75%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAATE 60
           MA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAEAA  E
Sbjct: 3   MATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAA-VE 62

Query: 61  APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 120
           APAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+
Sbjct: 63  APAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRE 122

Query: 121 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 180
           GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV
Sbjct: 123 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 182

Query: 181 GQNFRSIGKNVSPIEVKFTGKQVYDL 206
           GQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 183 GQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g184090 vs. TAIR 10
Match: AT1G03130.1 (photosystem I subunit D-2 )

HSP 1 Score: 286.6 bits (732), Expect = 1.6e-77
Identity = 155/211 (73.46%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MAAQAT-LFTPSLSTPKSAAVTIPWKQSS----TLSFINSKPLIKPAASSRIVKVSAEAE 60
           MA QA  +F+P+++T  SA   +    SS    +LSF  +K  I+   +      S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF--TKTAIRAEKTE-----SSSAA 60

Query: 61  AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Csor.00g184090 vs. TAIR 10
Match: AT4G02770.1 (photosystem I subunit D-1 )

HSP 1 Score: 281.2 bits (718), Expect = 6.8e-76
Identity = 153/212 (72.17%), Postives = 167/212 (78.77%), Query Frame = 0


Query: 1   MAAQAT-LFTPSLSTPKSAAVTIPWKQSST-----LSFINSKPLIKPAASSRIVKVSAEA 60
           MA QA  +F  +++T  ++ V      S+T     LSF  +    +   SS     +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSS----AAAAA 60

Query: 61  EAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
             A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGG
Sbjct: 61  APATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGG 120

Query: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK N
Sbjct: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKAN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           PGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

The following BLAST results are available for this feature:

BLAST of Csor.00g184090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32869	9.1e-102	91.26	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
P12372	1.4e-86	80.38	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
P29302	2.5e-83	77.78	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
P12353	1.1e-81	75.81	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SA56	2.3e-76	73.46	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Csor.00g184090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582291.1	2.91e-140	100.00	Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argy...	[more]
XP_022955930.1	1.27e-139	99.51	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_022979397.1	7.36e-139	99.03	photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]	[more]
KAG7018694.1	2.19e-138	99.52	Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argy...	[more]
XP_023528925.1	8.91e-138	99.03	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]

BLAST of Csor.00g184090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWF9	6.16e-140	99.51	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1INM6	3.56e-139	99.03	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1ICA2	3.39e-130	93.20	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1F7T5	5.63e-129	92.72	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A5D3D399	2.29e-128	91.75	Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Csor.00g184090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03130.1	1.6e-77	73.46	photosystem I subunit D-2	[more]
AT4G02770.1	6.8e-76	72.17	photosystem I subunit D-1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 74..204 e-value: 4.9E-68 score: 226.9
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..206
None	No IPR available	GENE3D	3.30.1470.10	Photosystem I PsaD, reaction center subunit II	coord: 64..206 e-value: 3.5E-77 score: 258.6
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	64234	Photosystem I subunit PsaD	coord: 71..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g184090.m01	Csor.00g184090.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I