Csor.00g182590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g182590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	GDT1 family protein
Location	Csor_Chr14: 15446208 .. 15446838 (-)
RNA-Seq Expression	Csor.00g182590
Synteny	Csor.00g182590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATGAAATTCGTTTTACAAATTCGAGAATCATCCCATTTTATCTCTGCAACTGCGACGTGGCAATTTCGGATTCAGATTCCGATTTTTGGCGGGGATTCAACTTCTCGGAGCTGTTCTCCGGTTCAACCGCCGCCGGCCGGCGAGTATTATGGTTTTGCTGTAGGTGGATATGAAGTTCTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGTTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTAATTGCCATAACCGTACTGAAATCGCGTAATTTTCTCTTGCATTTCCTCTGTTTCTCTCTAATTATCTGGTTTTGATTTTGATTTTGCGATTTCCAAATGCTGAGAGTTCGCATCATAGGTAGATTAGTTGCTCATTGCTAAGTGAAACTGGTTGTTTGCGAGTTTCTTCGAGTAATTTACGGATGATTATATTTCCGAATAACTTAATCTTTTCGAATGCGCATTCTTTGCATTCTGTGAGCATATTGAGCGAGTAATGAGTACGTTGCTTACAGTGAAATGTAGAAGAGTTACGAGATTGAACTGGACGCATGGATAA

mRNA sequence

ATGCATATGAAATTCGTTTTACAAATTCGAGAATCATCCCATTTTATCTCTGCAACTGCGACGTGGCAATTTCGGATTCAGATTCCGATTTTTGGCGGGGATTCAACTTCTCGGAGCTGTTCTCCGGTTCAACCGCCGCCGGCCGGCGAGTATTATGGTTTTGCTGTAGGTGGATATGAAGTTCTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGTTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTAATTGCCATAACCGTACTGAAATCGCTGAAATGTAGAAGAGTTACGAGATTGAACTGGACGCATGGATAA

Coding sequence (CDS)

ATGCATATGAAATTCGTTTTACAAATTCGAGAATCATCCCATTTTATCTCTGCAACTGCGACGTGGCAATTTCGGATTCAGATTCCGATTTTTGGCGGGGATTCAACTTCTCGGAGCTGTTCTCCGGTTCAACCGCCGCCGGCCGGCGAGTATTATGGTTTTGCTGTAGGTGGATATGAAGTTCTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGTTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTAATTGCCATAACCGTACTGAAATCGCTGAAATGTAGAAGAGTTACGAGATTGAACTGGACGCATGGATAA

Protein sequence

MHMKFVLQIRESSHFISATATWQFRIQIPIFGGDSTSRSCSPVQPPPAGEYYGFAVGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG

Homology

[Close]

BLAST of Csor.00g182590 vs. NCBI nr
Match: KAG6582441.1 (hypothetical protein SDJN03_22443, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258 bits (660), Expect = 6.34e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MHMKFVLQIRESSHFISATATWQFRIQIPIFGGDSTSRSCSPVQPPPAGEYYGFAVGGYE 60
           MHMKFVLQIRESSHFISATATWQFRIQIPIFGGDSTSRSCSPVQPPPAGEYYGFAVGGYE
Sbjct: 1   MHMKFVLQIRESSHFISATATWQFRIQIPIFGGDSTSRSCSPVQPPPAGEYYGFAVGGYE 60

Query: 61  VLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTR 120
           VLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTR
Sbjct: 61  VLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTR 120

Query: 121 LNWTHG 126
           LNWTHG
Sbjct: 121 LNWTHG 126

[Close]

BLAST of Csor.00g182590 vs. NCBI nr
Match: XP_022924295.1 (uncharacterized protein LOC111431826 [Cucurbita moschata])

HSP 1 Score: 160 bits (404), Expect = 9.45e-48
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 47  PAGEYYGFAVGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIA 106
           P GEYYGF VGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG+VIA
Sbjct: 58  PPGEYYGFTVGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGTVIA 117

Query: 107 ITVLKSLKCRRVTRLNWTHG 126
           ITVLKSLKCRRVTRLNWTHG
Sbjct: 118 ITVLKSLKCRRVTRLNWTHG 137

[Close]

BLAST of Csor.00g182590 vs. NCBI nr
Match: KAG7028783.1 (Protein PAM71-homolog, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101 bits (251), Expect = 3.60e-23
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSV A TV KSLKCRRVTRLN  +G
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYG 57

[Close]

BLAST of Csor.00g182590 vs. NCBI nr
Match: XP_023521675.1 (protein PAM71-homolog, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023539860.1 protein PAM71-homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101 bits (251), Expect = 1.43e-22
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSV A TV KSLKCRRVTRLN  +G
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYG 57

[Close]

BLAST of Csor.00g182590 vs. NCBI nr
Match: XP_022948496.1 (protein PAM71-homolog, chloroplastic [Cucurbita moschata] >KAG6597316.1 Protein PAM71-homolog, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101 bits (251), Expect = 1.43e-22
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSV A TV KSLKCRRVTRLN  +G
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYG 57

[Close]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL
Match: A0A6J1EEE5 (uncharacterized protein LOC111431826 OS=Cucurbita moschata OX=3662 GN=LOC111431826 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 4.58e-48
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 47  PAGEYYGFAVGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIA 106
           P GEYYGF VGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG+VIA
Sbjct: 58  PPGEYYGFTVGGYEVLGRKREREMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGTVIA 117

Query: 107 ITVLKSLKCRRVTRLNWTHG 126
           ITVLKSLKCRRVTRLNWTHG
Sbjct: 118 ITVLKSLKCRRVTRLNWTHG 137

[Close]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL
Match: A0A6J1G9C7 (GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452154 PE=3 SV=1)

HSP 1 Score: 101 bits (251), Expect = 6.92e-23
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSV A TV KSLKCRRVTRLN  +G
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYG 57

[Close]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL
Match: A0A6J1IBK7 (GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473197 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.61e-22
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKK PFSPLLDSLPSCSASGSV A TV KSLKCRRVTRLN  +G
Sbjct: 1   MEGLVVRSPFVSTGKKFPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYG 57

[Close]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL
Match: A0A6J1IBI9 (GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473663 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.37e-21
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKK PFSPLLDSLPSCSASGSV A  V KSLKCRRVTRLN  +G
Sbjct: 1   MEGLVVRSPFVSTGKKFPFSPLLDSLPSCSASGSVFAKNVSKSLKCRRVTRLNTKYG 57

[Close]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL
Match: A0A0A0L826 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G133280 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.66e-19
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 70  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVIAITVLKSLKCRRVTRLNWTHG 126
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG V + TV  SLK RRVTRL+ T+G
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYG 57

The following BLAST results are available for this feature:

BLAST of Csor.00g182590 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g182590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582441.1	6.34e-87	100.00	hypothetical protein SDJN03_22443, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022924295.1	9.45e-48	96.25	uncharacterized protein LOC111431826 [Cucurbita moschata]	[more]
KAG7028783.1	3.60e-23	89.47	Protein PAM71-homolog, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023521675.1	1.43e-22	89.47	protein PAM71-homolog, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_02353...	[more]
XP_022948496.1	1.43e-22	89.47	protein PAM71-homolog, chloroplastic [Cucurbita moschata] >KAG6597316.1 Protein ...	[more]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEE5	4.58e-48	96.25	uncharacterized protein LOC111431826 OS=Cucurbita moschata OX=3662 GN=LOC1114318...	[more]
A0A6J1G9C7	6.92e-23	89.47	GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452154 PE=3 SV=1	[more]
A0A6J1IBK7	2.61e-22	87.72	GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473197 PE=3 SV=1	[more]
A0A6J1IBI9	1.37e-21	85.96	GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473663 PE=3 SV=1	[more]
A0A0A0L826	2.66e-19	82.46	GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G133280 PE=3 SV=1	[more]

BLAST of Csor.00g182590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g182590.m01	Csor.00g182590.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity