Csor.00g181900 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g181900
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 15823423 .. 15824199 (-)
RNA-Seq Expression	Csor.00g181900
Synteny	Csor.00g181900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCTCGATGTCGGATCCGTAAACAGATCGAAAAACTCGAAACCAACAGGGAAAAACAACAACAGCCACGCGAAGAAGAAGAAAAATGAGAAAATGGGGAAAGCAAGGAGACAAAAGAAGACAATGGTGGAGAAAAAAACCTGTTTGGTATTACTTCTCAACAAAAAGACAGAGAAAAAAGGGGCTATTGAGACTCCCTTATTGTTTCCTTGTTCCTTACTTGAGACAGTCCAATCAAGAATTTGGCCAACAGTGTAAGGAAATTTGAGGAGCATTCTTTTTCTGACTAGTTCATCATCATCATCATCATCATCATCTTCTCTTCTTCTTCTTCAGGAGATCGATGAGACCCAGGTGTGGGGAATTAGAGAAAAGGCTAACAATTGGGGCCTGGCTCGAAGTTTCAGGATCCAGAGTGTCCAAATTTATGGGTTTGTTGAGTTGTTCTTGATTGTGTTCTCTTTGATTTGATTATCTCGTGAAGTTTGGTGGGAGCATTGAATTCAGTGGCGGAATAGAAGCAGAAAAGGGATAAAATAAAAGCAATTCAGATACGCAAAGTTTGGTGCCTGTTTGTGTGTTTGACCAGGCCGAGTTGGCTCGTGGACTCAACTTCCAACCGTTCAGATGGTAGACGCGGCGGATGCTGATGGGTCTCTGTTTCCGTACTCACTGTCGTTTTCAGCCCTTGGGATTTGGTACCAAAACTCTCTCAGATTGGTCTTTGATGTTTGGCTTTTTGGAAGTCTAATACTGCATGAAGGAAGGTGA

mRNA sequence

ATGAAGAATCTCGATGTCGGATCCGTAAACAGATCGAAAAACTCGAAACCAACAGGGAAAAACAACAACAGCCACGCGAAGAAGAAGAAAAATGAGAAAATGGGGAAAGCAAGGAGACAAAAGAAGACAATGGTGGAGAAAAAAACCTGTTTGGTATTACTTCTCAACAAAAAGACAGAGAAAAAAGGGGCTATTGAGACTCCCTTATTGTTTCCTTGTTCCTTACTTGAGACAGTCCAATCAAGAATTTGGCCAACAGTGAGATCGATGAGACCCAGGTGTGGGGAATTAGAGAAAAGGCTAACAATTGGGGCCTGGCTCGAAGTTTCAGGATCCAGAGTGTCCAAATTTATGGGCCGAGTTGGCTCGTGGACTCAACTTCCAACCGTTCAGATGGTAGACGCGGCGGATGCTGATGGGTCTCTGTTTCCGTACTCACTGTCGTTTTCAGCCCTTGGGATTTGGTACCAAAACTCTCTCAGATTGGTCTTTGATGTTTGGCTTTTTGGAAGTCTAATACTGCATGAAGGAAGGTGA

Coding sequence (CDS)

ATGAAGAATCTCGATGTCGGATCCGTAAACAGATCGAAAAACTCGAAACCAACAGGGAAAAACAACAACAGCCACGCGAAGAAGAAGAAAAATGAGAAAATGGGGAAAGCAAGGAGACAAAAGAAGACAATGGTGGAGAAAAAAACCTGTTTGGTATTACTTCTCAACAAAAAGACAGAGAAAAAAGGGGCTATTGAGACTCCCTTATTGTTTCCTTGTTCCTTACTTGAGACAGTCCAATCAAGAATTTGGCCAACAGTGAGATCGATGAGACCCAGGTGTGGGGAATTAGAGAAAAGGCTAACAATTGGGGCCTGGCTCGAAGTTTCAGGATCCAGAGTGTCCAAATTTATGGGCCGAGTTGGCTCGTGGACTCAACTTCCAACCGTTCAGATGGTAGACGCGGCGGATGCTGATGGGTCTCTGTTTCCGTACTCACTGTCGTTTTCAGCCCTTGGGATTTGGTACCAAAACTCTCTCAGATTGGTCTTTGATGTTTGGCTTTTTGGAAGTCTAATACTGCATGAAGGAAGGTGA

Protein sequence

MKNLDVGSVNRSKNSKPTGKNNNSHAKKKKNEKMGKARRQKKTMVEKKTCLVLLLNKKTEKKGAIETPLLFPCSLLETVQSRIWPTVRSMRPRCGELEKRLTIGAWLEVSGSRVSKFMGRVGSWTQLPTVQMVDAADADGSLFPYSLSFSALGIWYQNSLRLVFDVWLFGSLILHEGR

Homology

[Close]

BLAST of Csor.00g181900 vs. NCBI nr
Match: KAG6582508.1 (hypothetical protein SDJN03_22510, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343 bits (879), Expect = 1.27e-118
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MKNLDVGSVNRSKNSKPTGKNNNSHAKKKKNEKMGKARRQKKTMVEKKTCLVLLLNKKTE 60
           MKNLDVGSVNRSKNSKPTGKNNNSHAKKKKNEKMGKARRQKKTMVEKKTCLVLLLNKKTE
Sbjct: 1   MKNLDVGSVNRSKNSKPTGKNNNSHAKKKKNEKMGKARRQKKTMVEKKTCLVLLLNKKTE 60

Query: 61  KKGAIETPLLFPCSLLETVQSRIWPTVRSMRPRCGELEKRLTIGAWLEVSGSRVSKFMGR 120
           KKGAIETPLLFPCSLLETVQSRIWPTVRSMRPRCGELEKRLTIGAWLEVSGSRVSKFMGR
Sbjct: 61  KKGAIETPLLFPCSLLETVQSRIWPTVRSMRPRCGELEKRLTIGAWLEVSGSRVSKFMGR 120

Query: 121 VGSWTQLPTVQMVDAADADGSLFPYSLSFSALGIWYQNSLRLVFDVWLFGSLILHEGR 178
           VGSWTQLPTVQMVDAADADGSLFPYSLSFSALGIWYQNSLRLVFDVWLFGSLILHEGR
Sbjct: 121 VGSWTQLPTVQMVDAADADGSLFPYSLSFSALGIWYQNSLRLVFDVWLFGSLILHEGR 178

The following BLAST results are available for this feature:

BLAST of Csor.00g181900 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g181900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582508.1	1.27e-118	100.00	hypothetical protein SDJN03_22510, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g181900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g181900 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g181900.m01	Csor.00g181900.m01	mRNA