Csor.00g181640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g181640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	late embryogenesis abundant protein 6-like
Location	Csor_Chr14: 15979687 .. 15980365 (+)
RNA-Seq Expression	Csor.00g181640
Synteny	Csor.00g181640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCAGTAAGGGACAAGCTACACGACATCACCGCCATGCGGAAGGCCAAGTCCGAGGCAAAGGCCGAAGAGAAGGTGAGCTCCCGAGAAAACACACACACATGCACAAATCTCAATAATATCGAGTTTGGTTGTATTATAGAGAATGTTTTCAATCTGAATGTCAACGTCAGCTAGTTAAGGTATCTGTCAGTCTCGATTGAGAGACCGTGTAGTTAAGGTATCAACTAGTTAAGGTATATGTCAGTCTCGATTGAGAGACCGTATAGTTAAGGTATCAACTAGTTAAGGTGTATGTCAGTCTCGATTGAGAGACCGTGTAGTTAAGGTATCTGTCAGTCTCGATTGATTAAGACATGTGTTGGTCTCGGCCGAATACAATGTTACATTCTATTGGCAGGCAGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGAGTCTTCATGTTGCCAAAGCTGGAAAGAGGGCTGAGAAAGAAATGGCTAAGCATGCCAATGCTCACACCAATATCTTTGTGGCTCCTGGCGACGGCACCACCACCAACGTGGCCACCGCTCCAGGCGTGACTATGGTCGGAGCCCCTGGCACCGTCGACATGGCTGGACCTCATACCGTTCATAAGAAGACACTGTAA

mRNA sequence

ATGCAAGCAGTAAGGGACAAGCTACACGACATCACCGCCATGCGGAAGGCCAAGTCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGAGTCTTCATGTTGCCAAAGCTGGAAAGAGGGCTGAGAAAGAAATGGCTAAGCATGCCAATGCTCACACCAATATCTTTGTGGCTCCTGGCGACGGCACCACCACCAACGTGGCCACCGCTCCAGGCGTGACTATGGTCGGAGCCCCTGGCACCGTCGACATGGCTGGACCTCATACCGTTCATAAGAAGACACTGTAA

Coding sequence (CDS)

ATGCAAGCAGTAAGGGACAAGCTACACGACATCACCGCCATGCGGAAGGCCAAGTCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGAGTCTTCATGTTGCCAAAGCTGGAAAGAGGGCTGAGAAAGAAATGGCTAAGCATGCCAATGCTCACACCAATATCTTTGTGGCTCCTGGCGACGGCACCACCACCAACGTGGCCACCGCTCCAGGCGTGACTATGGTCGGAGCCCCTGGCACCGTCGACATGGCTGGACCTCATACCGTTCATAAGAAGACACTGTAA

Protein sequence

MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL

Homology

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BLAST of Csor.00g181640 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.7e-05
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MQAVRDKLHDITAMRKAK---SEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMSLH 60
          MQ+ + K+ D+ +  K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA M +H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGKRAEKEMAKHANAH 75
          +AKA    +K MAK ++ H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

[Close]

BLAST of Csor.00g181640 vs. NCBI nr
Match: XP_022924652.1 (late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 late embryogenesis abundant protein 6-like [Cucurbita moschata] >KAG6582534.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (537), Expect = 1.88e-68
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117
           KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117

[Close]

BLAST of Csor.00g181640 vs. NCBI nr
Match: XP_022980446.1 (late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980447.1 late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980448.1 late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980449.1 late embryogenesis abundant protein 6-like [Cucurbita maxima])

HSP 1 Score: 209 bits (533), Expect = 7.67e-68
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117
           KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDM GPHTVHKKTL
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMVGPHTVHKKTL 117

[Close]

BLAST of Csor.00g181640 vs. NCBI nr
Match: XP_023526293.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206 bits (523), Expect = 2.57e-66
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117
           KRAEKEMAKHAN HTNIFVAPGDGTTT VATAPGVTMVGAPGTVDM GPHTVHKKTL
Sbjct: 61  KRAEKEMAKHANTHTNIFVAPGDGTTTRVATAPGVTMVGAPGTVDMVGPHTVHKKTL 117

[Close]

BLAST of Csor.00g181640 vs. NCBI nr
Match: XP_023526292.1 (late embryogenesis abundant protein 6-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206 bits (523), Expect = 6.62e-66
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG
Sbjct: 30  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 89

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117
           KRAEKEMAKHAN HTNIFVAPGDGTTT VATAPGVTMVGAPGTVDM GPHTVHKKTL
Sbjct: 90  KRAEKEMAKHANTHTNIFVAPGDGTTTRVATAPGVTMVGAPGTVDMVGPHTVHKKTL 146

[Close]

BLAST of Csor.00g181640 vs. NCBI nr
Match: XP_004134355.1 (late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical protein Csa_011484 [Cucumis sativus])

HSP 1 Score: 155 bits (392), Expect = 2.70e-46
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVTMVGAPGTVDMAG-PHTVHKK 117
            +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+TMVGAPGTVDMAG P  V+KK
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPG-GTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120

[Close]

BLAST of Csor.00g181640 vs. ExPASy TrEMBL
Match: A0A6J1ED39 (late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432084 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 9.12e-69
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117
           KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117

[Close]

BLAST of Csor.00g181640 vs. ExPASy TrEMBL
Match: A0A6J1IRE5 (late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111479813 PE=3 SV=1)

HSP 1 Score: 209 bits (533), Expect = 3.72e-68
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPHTVHKKTL 117
           KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDM GPHTVHKKTL
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMVGPHTVHKKTL 117

[Close]

BLAST of Csor.00g181640 vs. ExPASy TrEMBL
Match: A0A0A0L6I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1)

HSP 1 Score: 155 bits (392), Expect = 1.31e-46
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVTMVGAPGTVDMAG-PHTVHKK 117
            +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+TMVGAPGTVDMAG P  V+KK
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPG-GTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120

[Close]

BLAST of Csor.00g181640 vs. ExPASy TrEMBL
Match: A0A5A7U624 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003530 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 1.14e-45
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAV++KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT------NVATAPGVTMVGAPGTVDMAG-PHTVH 117
            +AEKEMAK+A+ HTN FVAPG GT T      NV  APG+TMVGAPGTVDMAG P   +
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPG-GTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPAN 120

[Close]

BLAST of Csor.00g181640 vs. ExPASy TrEMBL
Match: A0A1S3AWI7 (uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 1.14e-45
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60
           MQAV++KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT------NVATAPGVTMVGAPGTVDMAG-PHTVH 117
            +AEKEMAK+A+ HTN FVAPG GT T      NV  APG+TMVGAPGTVDMAG P   +
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPG-GTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPAN 120

[Close]

BLAST of Csor.00g181640 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 48.1 bits (113), Expect = 5.5e-06
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MQAVRDKLHDITAMRKAK---SEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMSLH 60
          MQ+ + K+ D+ +  K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA M +H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGKRAEKEMAKHANAH 75
          +AKA    +K MAK ++ H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

The following BLAST results are available for this feature:

BLAST of Csor.00g181640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39138	7.7e-05	43.04	Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE...	[more]

BLAST of Csor.00g181640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924652.1	1.88e-68	100.00	late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 ...	[more]
XP_022980446.1	7.67e-68	99.15	late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980447.1 la...	[more]
XP_023526293.1	2.57e-66	97.44	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_023526292.1	6.62e-66	97.44	late embryogenesis abundant protein 6-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_004134355.1	2.70e-46	77.87	late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical...	[more]

BLAST of Csor.00g181640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED39	9.12e-69	100.00	late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IRE5	3.72e-68	99.15	late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0L6I7	1.31e-46	77.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1	[more]
A0A5A7U624	1.14e-45	75.81	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3AWI7	1.14e-45	75.81	uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=...	[more]

BLAST of Csor.00g181640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32560.1	5.5e-06	43.04	Late embryogenesis abundant protein, group 1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33493:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 1..98
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..66 e-value: 1.7E-15 score: 57.4
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g181640.m01	Csor.00g181640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy