Csor.00g181090 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g181090
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionplant UBX domain-containing protein 9
LocationCsor_Chr14: 16307997 .. 16308691 (-)
RNA-Seq ExpressionCsor.00g181090
SyntenyCsor.00g181090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTGGGGATGGAGAATTAGGGTTTCCTGAGAGGGAAGAAAGTGACCGTACTTGTTACGGAAGAACGCTTGTAGGTGTGTGTCAGTCTCTCGCTTATGTAGCAGCAAAATTTCTACTCTCCCGACAGGCCATCGGACGGGGGAGAGACGGGGAGTTCGGATGCCACGTGCGATGCGATAGTCTCACGTGTTCAATAACGACGTCGTTTCATCCCTTAAATCTCATCTCAATTTTAACCTATAAAATTATCAATTTATTTCGAAGGCGTTGCCGAATCAAGAAGCGGTCGAAACCTTCACGAGATTCACCGGCGCTTCCGAGTCTCTCGCCATGCGTAAGCTCGAGGTCCACTCTCCGTTGGAGTAACACTGCAGCACTTGAATTTTGTGTTGGTTTGTCGTTTTAATTTTCAGGTTTTCAAATTTCAACCACGACATGTATTTTTACTGATTGTTGATGAAATTTTAGCATTCGAAGTACTGAATGAACACATTCACAGTAACATCCGAATGATTGATCCGAGTTTCGCATCTAATTATTGATGATCAGGCAAGGCCATATCGAAGGTGTACTTTTGGAGTTGAAGATGGTTCGATGATGTTGAGAGATCTCGGCCTCACCGGCAAGCAAGAAGCCTTGTTTGTGGAGTTAATATGGTATAATATCTTCCACCAAACACTTTTGAATTGA

mRNA sequence

ATGGAATTTGGGGATGGAGAATTAGGGTTTCCTGAGAGGGAAGAAAGTGACCGTACTTGTTACGGAAGAACGCTTGTAGGTGTGTGTCAGTCTCTCGCTTATGTAGCAGCAAAATTTCTACTCTCCCGACAGGCCATCGGACGGGGGAGAGACGGGGAGTTCGGATGCCACCACTTGAATTTTGTGTTGGTTTGTCGTTTTAATTTTCAGGCAAGGCCATATCGAAGGTGTACTTTTGGAGTTGAAGATGGTTCGATGATGTTGAGAGATCTCGGCCTCACCGGCAAGCAAGAAGCCTTGTTTGTGGAGTTAATATGGTATAATATCTTCCACCAAACACTTTTGAATTGA

Coding sequence (CDS)

ATGGAATTTGGGGATGGAGAATTAGGGTTTCCTGAGAGGGAAGAAAGTGACCGTACTTGTTACGGAAGAACGCTTGTAGGTGTGTGTCAGTCTCTCGCTTATGTAGCAGCAAAATTTCTACTCTCCCGACAGGCCATCGGACGGGGGAGAGACGGGGAGTTCGGATGCCACCACTTGAATTTTGTGTTGGTTTGTCGTTTTAATTTTCAGGCAAGGCCATATCGAAGGTGTACTTTTGGAGTTGAAGATGGTTCGATGATGTTGAGAGATCTCGGCCTCACCGGCAAGCAAGAAGCCTTGTTTGTGGAGTTAATATGGTATAATATCTTCCACCAAACACTTTTGAATTGA

Protein sequence

MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCHHLNFVLVCRFNFQARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELIWYNIFHQTLLN
Homology
BLAST of Csor.00g181090 vs. ExPASy Swiss-Prot
Match: Q4V3D3 (Plant UBX domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUX9 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.5e-04
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 72  RPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 106
           RPY R  F ++DG++   +L LT KQEALF+EL+
Sbjct: 435 RPYPRRAFSIQDGALTFEELSLTNKQEALFLELL 468

BLAST of Csor.00g181090 vs. NCBI nr
Match: KAG6582589.1 (hypothetical protein SDJN03_22591, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (638), Expect = 6.83e-84
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCHHLN 60
           MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCHHLN
Sbjct: 1   MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCHHLN 60

Query: 61  FVLVCRFNFQARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELIWYNIFHQTLLN 116
           FVLVCRFNFQARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELIWYNIFHQTLLN
Sbjct: 61  FVLVCRFNFQARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELIWYNIFHQTLLN 116

BLAST of Csor.00g181090 vs. NCBI nr
Match: KAG7018973.1 (hypothetical protein SDJN02_20850, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175 bits (443), Expect = 1.73e-52
Identity = 93/122 (76.23%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 1   MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCHHL- 60
           MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCH L 
Sbjct: 13  MEFGDGELGFPEREESDRTCYGRTLVGVCQSLAYVAAKFLLSRQAIGRGRDGEFGCHALP 72

Query: 61  --------------NFVLVCR----FNFQ---ARPYRRCTFGVEDGSMMLRDLGLTGKQE 100
                         +  L  R    F FQ   ARPYRRCTFGVEDGSMMLRDLGLTGKQE
Sbjct: 73  NQEAVETFTRFTGASESLAMRKLEVFKFQPRHARPYRRCTFGVEDGSMMLRDLGLTGKQE 132

BLAST of Csor.00g181090 vs. NCBI nr
Match: XP_038883756.1 (plant UBX domain-containing protein 9 [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 2.01e-12
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMMLRDLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLRDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. NCBI nr
Match: XP_008438091.1 (PREDICTED: plant UBX domain-containing protein 9 [Cucumis melo] >KAA0048994.1 plant UBX domain-containing protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.01e-12
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMMLRDLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLRDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. NCBI nr
Match: XP_004133881.1 (plant UBX domain-containing protein 9 [Cucumis sativus] >KGN56549.1 hypothetical protein Csa_010232 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.01e-12
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMMLRDLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLRDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. ExPASy TrEMBL
Match: A0A5A7U110 (Plant UBX domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002180 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.71e-13
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMMLRDLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLRDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. ExPASy TrEMBL
Match: A0A0A0L6B8 (UBX domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G123710 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.71e-13
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMMLRDLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLRDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. ExPASy TrEMBL
Match: A0A1S3AVM3 (plant UBX domain-containing protein 9 OS=Cucumis melo OX=3656 GN=LOC103483304 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.71e-13
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMMLRDLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLRDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. ExPASy TrEMBL
Match: A0A5D3D1S6 (Plant UBX domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004400 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.35e-12
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 71  ARPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 105
           ARPY RCTFGVEDGSMML DLGLTGKQEALFVELI
Sbjct: 400 ARPYPRCTFGVEDGSMMLSDLGLTGKQEALFVELI 434

BLAST of Csor.00g181090 vs. ExPASy TrEMBL
Match: A0A6J1FHX0 (plant UBX domain-containing protein 9 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445577 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.72e-11
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 51  DGEFGCHHLNFVLVCR----FNFQA-------------RPYRRCTFGVEDGSMMLRDLGL 105
           DG   CH   F+   R    FNF A             RPY RC FGVEDGSMMLRDLGL
Sbjct: 364 DGR--CHQRRFLYSDRLQLLFNFIADKLAMQPGTYKVVRPYPRCAFGVEDGSMMLRDLGL 423

BLAST of Csor.00g181090 vs. TAIR 10
Match: AT4G00752.1 (UBX domain-containing protein )

HSP 1 Score: 45.1 bits (105), Expect = 4.6e-05
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 72  RPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 106
           RPY R  F ++DG++   +L LT KQEALF+EL+
Sbjct: 435 RPYPRRAFSIQDGALTFEELSLTNKQEALFLELL 468

BLAST of Csor.00g181090 vs. TAIR 10
Match: AT4G11740.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.8e-05
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 0

Query: 72  RPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 106
           RPY R  FG  +    L DLGLT KQEALF+ELI
Sbjct: 531 RPYPRHAFGDGESESTLNDLGLTSKQEALFLELI 564

BLAST of Csor.00g181090 vs. TAIR 10
Match: AT4G23040.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 0

Query: 72  RPYRRCTFGVEDGSMMLRDLGLTGKQEALFVELI 106
           RPY R  FG  + S  L D+GLT KQEALF+ELI
Sbjct: 492 RPYPRRAFGDGECSSTLNDIGLTSKQEALFLELI 525

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q4V3D36.5e-0452.94Plant UBX domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUX9 PE... [more]
Match NameE-valueIdentityDescription
KAG6582589.16.83e-84100.00hypothetical protein SDJN03_22591, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018973.11.73e-5276.23hypothetical protein SDJN02_20850, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038883756.12.01e-1297.14plant UBX domain-containing protein 9 [Benincasa hispida][more]
XP_008438091.12.01e-1297.14PREDICTED: plant UBX domain-containing protein 9 [Cucumis melo] >KAA0048994.1 pl... [more]
XP_004133881.12.01e-1297.14plant UBX domain-containing protein 9 [Cucumis sativus] >KGN56549.1 hypothetical... [more]
Match NameE-valueIdentityDescription
A0A5A7U1109.71e-1397.14Plant UBX domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0L6B89.71e-1397.14UBX domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G123710 PE=4 SV... [more]
A0A1S3AVM39.71e-1397.14plant UBX domain-containing protein 9 OS=Cucumis melo OX=3656 GN=LOC103483304 PE... [more]
A0A5D3D1S66.35e-1294.29Plant UBX domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1FHX07.72e-1154.17plant UBX domain-containing protein 9 isoform X2 OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
AT4G00752.14.6e-0552.94UBX domain-containing protein [more]
AT4G11740.17.8e-0561.76Ubiquitin-like superfamily protein [more]
AT4G23040.11.0e-0461.76Ubiquitin-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g181090.m01Csor.00g181090.m01mRNA