Csor.00g179220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g179220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTransmembrane protein, putative
LocationCsor_Chr01: 20836 .. 21650 (-)
RNA-Seq ExpressionCsor.00g179220
SyntenyCsor.00g179220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATGAATATTTATCATTTTACTCTTCACCTCCTTCAAATGAAGTTGGCTTTGATAAACTATTATTACTATAAGAAATATGTTTACCTCCGGACAGGTGGAAGGTTCAAATAGCTGATGGAGAATGAGATGAAAAAGGAGGAGAGTTGGGTTGGCTCCAAAGCTCAAAGCATGGACACGTGTATGGAAAATGGAAGATGCACTGTCCACCTGGAAGTCCTTCGGGAACTTGCAACATATAATATATATAATATAATGTGTATATATTAGTGTAGTGGTAAGTCACAAGGCGCCAGGGGTTTGGTATATCAACTAAATTAGCAGTTCGCAGGGGACTATTGAAGATGATGAAGAAGGGTGATTTTGTTTTGGTGTTAGTGTTATGGGTGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAATAATATCGAAGAAACCGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAAGTTCGAAAAGTGGCCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGAGTCAGTATATTCATATGCATATTTGGTTTCCTTTGCTTTACCTGCTTGTTTCTTACACATAATACGCGGCATGGTTGGGTCTCAGCTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAACCAGATTCGGAACTCTAG

mRNA sequence

ATGGTGGAAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAAGTTCGAAAAGTGGCCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAACCAGATTCGGAACTCTAG

Coding sequence (CDS)

ATGGTGGAAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAAGTTCGAAAAGTGGCCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAACCAGATTCGGAACTCTAG

Protein sequence

MVEASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL
Homology
BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6606661.1 (hypothetical protein SDJN03_00003, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (449), Expect = 5.24e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MVEASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSF 60
          MVEASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSF
Sbjct: 1  MVEASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSF 60

Query: 61 HTTKQMVEDSAKAAAQTLRPQPDSEL 86
          HTTKQMVEDSAKAAAQTLRPQPDSEL
Sbjct: 61 HTTKQMVEDSAKAAAQTLRPQPDSEL 86

BLAST of Csor.00g179220 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 166 bits (420), Expect = 3.11e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0

Query: 4   ASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 63
           A+S PPPNSYWEEVRKV NRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT
Sbjct: 30  AASSPPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 89

Query: 64  KQMVEDSAKAAAQTLRPQPDSEL 86
           KQMVEDSAKAAAQTLRPQPDSEL
Sbjct: 90  KQMVEDSAKAAAQTLRPQPDSEL 112

BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (409), Expect = 2.37e-49
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 4   ASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 63
           ASSP PPNSYWEEVRKV NRAVTCLFPPKIDFRPG PVEDGQVNGNENMKESITKSFHTT
Sbjct: 45  ASSPSPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGNPVEDGQVNGNENMKESITKSFHTT 104

Query: 64  KQMVEDSAKAAAQTLRPQPDSEL 86
           KQMVEDSA AAAQTL+PQPDSEL
Sbjct: 105 KQMVEDSANAAAQTLQPQPDSEL 127

BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 6.79e-49
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 4   ASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 63
           ASSP PPNSYWEEVRKV NRAVTCLFPPKIDFR G PVEDGQVNGNENMKESITKSFHTT
Sbjct: 45  ASSPSPPNSYWEEVRKVVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTT 104

Query: 64  KQMVEDSAKAAAQTLRPQPDSEL 86
           KQMVEDSAKAAAQTL+PQPDSEL
Sbjct: 105 KQMVEDSAKAAAQTLQPQPDSEL 127

BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (402), Expect = 2.76e-48
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 4   ASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 63
           ASSP PPNSYWEEVRKV NRAVTCLFPPKIDFR G PVEDGQVNGNENMKESITKSFHTT
Sbjct: 45  ASSPSPPNSYWEEVRKVVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTT 104

Query: 64  KQMVEDSAKAAAQTLRPQPDSEL 86
           KQMV+DSAKAAAQTL+PQPDSEL
Sbjct: 105 KQMVKDSAKAAAQTLQPQPDSEL 127

BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.51e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0

Query: 4   ASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 63
           A+S PPPNSYWEEVRKV NRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT
Sbjct: 30  AASSPPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTT 89

Query: 64  KQMVEDSAKAAAQTLRPQPDSEL 86
           KQMVEDSAKAAAQTLRPQPDSEL
Sbjct: 90  KQMVEDSAKAAAQTLRPQPDSEL 112

BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 4.56e-33
Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 0

Query: 3   EASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQ----VNGNENMKESITK 62
           E S+P PPNSYWEEVRKV N+A T LFPPKIDFRPGK VED       NGN N+KE++TK
Sbjct: 39  ETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTK 98

Query: 63  SFHTTKQMVEDSAKAAAQTL-RPQPDSEL 86
           SF  TK+MVEDSAKAAAQTL +P P SEL
Sbjct: 99  SFEKTKEMVEDSAKAAAQTLQKPPPHSEL 127

BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 3.43e-30
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 3   EASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVED--GQVNGNENMKESITKSF 62
           E S+P PPNSYWEEVRKV N+A + LFPPKIDFRPGK VED  G    + N+KE++TKSF
Sbjct: 40  ETSTPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSF 99

Query: 63  HTTKQMVEDSAKAAAQTL-RPQPDSEL 86
             TK+MVEDSAKAAAQTL +P P SEL
Sbjct: 100 EKTKEMVEDSAKAAAQTLQKPPPHSEL 126

BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 3.43e-30
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 3   EASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVED--GQVNGNENMKESITKSF 62
           E S+P PPNSYWEEVRKV N+A + LFPPKIDFRPGK VED  G    + N+KE++TKSF
Sbjct: 40  ETSTPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSF 99

Query: 63  HTTKQMVEDSAKAAAQTL-RPQPDSEL 86
             TK+MVEDSAKAAAQTL +P P SEL
Sbjct: 100 EKTKEMVEDSAKAAAQTLQKPPPHSEL 126

BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.92e-14
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 13  YWEEVRK-VANRAVTCLFPPKIDFRPGKPV--EDGQVNGNENMKESITKSFHTTKQMVED 72
           YW+ +R  V +  +  LFPPKIDFRPGK    EDG  +GNEN+KE++TKSF   KQ+V+D
Sbjct: 83  YWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDGGGHGNENVKEALTKSFDQGKQIVQD 142

Query: 73  SAKAAA 75
           SAKAAA
Sbjct: 143 SAKAAA 148

BLAST of Csor.00g179220 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 12  SYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSA 71
           +YW +VR+  +R  +  FPP   F  GK   D  +   ENMKE+ T+SF  +K  VE++A
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYF-TGK--NDAPMGAGENMKEAATRSFEHSKATVEEAA 119

Query: 72  KAAAQTL 79
           ++AA+ +
Sbjct: 120 RSAAEVV 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6606661.15.24e-56100.00hypothetical protein SDJN03_00003, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022948557.13.11e-5196.39uncharacterized protein LOC111452199 [Cucurbita moschata][more]
KAG6571254.12.37e-4993.98hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571257.16.79e-4993.98hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571255.12.76e-4892.77hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1G9K31.51e-5196.39uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC1114521... [more]
A0A0A0L9044.56e-3370.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1[more]
A0A5A7VE773.43e-3068.97Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CDE03.43e-3068.97uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=... [more]
A0A6J1D2A41.92e-1459.09uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
AT1G16850.11.1e-0638.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..86
NoneNo IPR availablePANTHERPTHR35463TRANSMEMBRANE PROTEINcoord: 8..78
NoneNo IPR availablePANTHERPTHR35463:SF11BNAC05G12860D PROTEINcoord: 8..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g179220.m01Csor.00g179220.m01mRNA