Csor.00g179220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTATGAATATTTATCATTTTACTCTTCACCTCCTTCAAATGAAGTTGGCTTTGATAAACTATTATTACTATAAGAAATATGTTTACCTCCGGACAGGTGGAAGGTTCAAATAGCTGATGGAGAATGAGATGAAAAAGGAGGAGAGTTGGGTTGGCTCCAAAGCTCAAAGCATGGACACGTGTATGGAAAATGGAAGATGCACTGTCCACCTGGAAGTCCTTCGGGAACTTGCAACATATAATATATATAATATAATGTGTATATATTAGTGTAGTGGTAAGTCACAAGGCGCCAGGGGTTTGGTATATCAACTAAATTAGCAGTTCGCAGGGGACTATTGAAGATGATGAAGAAGGGTGATTTTGTTTTGGTGTTAGTGTTATGGGTGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAATAATATCGAAGAAACCGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAAGTTCGAAAAGTGGCCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGAGTCAGTATATTCATATGCATATTTGGTTTCCTTTGCTTTACCTGCTTGTTTCTTACACATAATACGCGGCATGGTTGGGTCTCAGCTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAACCAGATTCGGAACTCTAG ATGGTGGAAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAAGTTCGAAAAGTGGCCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAACCAGATTCGGAACTCTAG ATGGTGGAAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAAGTTCGAAAAGTGGCCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAACCAGATTCGGAACTCTAG MVEASSPPPPNSYWEEVRKVANRAVTCLFPPKIDFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL Homology
BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6606661.1 (hypothetical protein SDJN03_00003, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 177 bits (449), Expect = 5.24e-56 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Csor.00g179220 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata]) HSP 1 Score: 166 bits (420), Expect = 3.11e-51 Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0
BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 162 bits (409), Expect = 2.37e-49 Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 160 bits (406), Expect = 6.79e-49 Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of Csor.00g179220 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 159 bits (402), Expect = 2.76e-48 Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1) HSP 1 Score: 166 bits (420), Expect = 1.51e-51 Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0
BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1) HSP 1 Score: 120 bits (300), Expect = 4.56e-33 Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 0
BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1) HSP 1 Score: 112 bits (281), Expect = 3.43e-30 Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0
BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1) HSP 1 Score: 112 bits (281), Expect = 3.43e-30 Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0
BLAST of Csor.00g179220 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.92e-14 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0
BLAST of Csor.00g179220 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06 Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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