Csor.00g178700 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g178700
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	50S ribosomal protein L13, chloroplastic-like
Location	Csor_Chr09: 3307828 .. 3310750 (-)
RNA-Seq Expression	Csor.00g178700
Synteny	Csor.00g178700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTCCCAGAAAGTCATTCGTTGATGGGTTTCCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGGCATTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGTACGTCGGTATATCTTTTAAAATGTTTGTTCGTTTGCGCTAAATCTGGTAGTGGAAATGGTCTTATGGGTTCCAAGCAATAGTGTTCTTTTGGGAGGGGAGTTCAGTTTTTGATTTCTTTGGGGGAGGGGAGCTTTGCTCAGTTCATTCAATTGCATTAAACTGGCTTCTCCACGTTTTACTGTCCCCTTCCATCAATATTGAAAGTAGATCATATCATACCATTGTGGAGAGTCGTGGTTCTTAATATGGAATTAGAGCCATGACCTTAACTTAGCCATGTAAATAGAATCCTCAAATGTGGAACAAAGAAGTTGTGAGACTCAAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTTGAGGGTTCCATAGGCCTCAGGGGAGACTCTCGTTCAAGGGGAGGATTGTTGAGAATTGTTGAGAATTGTTGGGAGAGGAGTCCCACATCGGGATTATTGAGGATTGTTGGGAGAAAAGTTCCACATTGACTAATTAAGGTGTTGATAATAAGGAATACATCTCCATTGGTATGAACCCTTTTGGAGAAACCGAAAACAAAATCGTAAGAGCTTATGCTCAAAATGGACAATATCATACCATTGTGGAGAGTCGTGGTTCCTAACCATGACCCTTACAACTGAACATACAAACCTCTTTTTGCTTGTTACGCCAATGTGATGTTCATTCCCTGAATTTTGAAGAATTATTTCCTACTTCTGCGAGCTGTTTGTTTATTTCCCCACAGATTGGATATTCAGCAATTGCTGTTCTTTTCCATTCAGGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATATTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTTCATAGTGTTCTATTGTGGCTTTCATTAAAAAAAAAAAAGAATGATCTATTGTGCTTGCAATTACCCACCTCGAGCTGTGCATATGCTTTTGTGATACGAAATAAATAAGGTGTCTTAATCATGCTATGGATGACAAGATCTATGTTGTTTAGATTAAGGAGGTTTTGTTGTATTTTTTAAGTTTTAGATAATCGTCTTTAAGATTATAAGTAACGTTTAGATAGTGACCATTATGATATTGATGACCTTAAAAAGTTACAACCGTTCGCTTAACCATATGTTACTGTAAGGTTTATTTTGGAGGCTATAAATAGTCATTCATGTTGTTGCTTTAGTAGGAAGATTTTGGATATTAAAATGAAGTTTGCATAGTATACTTCTTAAGCCCTGAGCTTGTTCCTTTGCATTTCTCGTGTTTAGACGTGCATGCTAGAGTCGTTCAAGTAGCTTTGATCAAACTATCTTGTGGAATGATTCGAATCATGAGTTTAAAAACGAGTTTTTTTTACTCTTGATCTTGATCATCAAGGTAATCCGTTCCAAAACTTTTCCTTGGGTTGATTCTTATCGTTTTTTGGATTTTTGGATAATTTAGATCTAGAGATCTCGTTCTTTAGCAAGGTTTTTAGATCAAATCCTAAGAGTTTCATATGTTTTGTCTGCTCAATTTGAACTTTCTTGCTATCGGTTTTCAGTCCTCTCCAACCGATGTAGGATCTCACACTTTCTTGGTCCTTTCTAGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGCGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGGTAAGCGATTCCGACTACTTAAGTGCTATATCGTATCATATACATGTATACGACTCTGCAAACGGAATATTTATGGGTGGTAGAGGGATTGCTAAAGTTTTGGGCAACGATCCGTTTAGGAAAATTATGTCAAAAGAGATGCAGCAAGTATAGTTTCTACTTTATTTGGTAGATCTGTTTTGTTAGAAGCTTTAGTTGGTCAGTTAAGATAGCCTTTTGTGTTTTGGTTGCTGTACACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCGAACTCGTCACCAATGGGGTTTACAGCTTCCGATTCCCATATAAGTTGTGCCAATGGTTCTCACGTTCTATAACATAGCATTCTAGAAGCAATGTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAATGTTCCTTATAAGGGCGTGGAAACTTCTCCCTAGTAGACCCATTTTAAAACCGTGAGGCTGACGGTGATATGCAACGGACTGCCAAGGCAGACAATATCCACTAGCTGTGGGCTTGGGCTGTTACTCAGAAAGTTTCCGTAAACTGCTAAAAGAATTTCGCTGTTTGCTTCTATTTTATTGGCTGTTTCAAACCATGACAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAAGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

mRNA sequence

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTCCCAGAAAGTCATTCGTTGATGGGTTTCCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGGCATTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATATTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGCGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAAGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTCCCAGAAAGTCATTCGTTGATGGGTTTCCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGGCATTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATATTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGCGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAAGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

Protein sequence

MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQSKSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER

Homology

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BLAST of Csor.00g178700 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.5e-90
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MA+LC+SS+         L++ S  + G  RKS   GF L    + +      + + + S
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSGIQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVV 120
           K  G+QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA DHVNT+KPW+VV
Sbjct: 61  K-RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of Csor.00g178700 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-80
Identity = 139/177 (78.53%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 72  LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIAN 131
           +  VPL+QRWMF  +E  GPDIWN TWYPK+ DHV T+K WYVVDATD ILGR+ASTIA 
Sbjct: 74  IPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAI 133

Query: 132 HIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQ 191
           HIRGK+L +YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSGRPGG+  ETFDQLQ+
Sbjct: 134 HIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQK 193

Query: 192 RIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 249
           RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P++LP+RDKRI  E+
Sbjct: 194 RIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250

[Close]

BLAST of Csor.00g178700 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-50
Identity = 98/146 (67.12%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 95  NKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of Csor.00g178700 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.5e-50
Identity = 99/145 (68.28%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 95  NKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of Csor.00g178700 vs. ExPASy Swiss-Prot
Match: B1WQT8 (50S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplM PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-49
Identity = 91/131 (69.47%), Postives = 110/131 (83.97%), Query Frame = 0


Query: 109 EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQ 168
           ++ WYV+DATD+ LGRLA  +A  +RGK+ PTYTP +D G FVI++NA+KVAV+GRK TQ
Sbjct: 13  DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72

Query: 169 KLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 228
           KLYRRHSGRPGGM +ETF++LQQRIPERIIE AV+GMLPK  LGR LF  LKVY GP+HP
Sbjct: 73  KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLKVYPGPNHP 132

Query: 229 HEAQKPVELPI 240
           H+AQKP EL +
Sbjct: 133 HQAQKPEELTL 143

[Close]

BLAST of Csor.00g178700 vs. NCBI nr
Match: KAG6591772.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 504 bits (1299), Expect = 2.48e-180
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. NCBI nr
Match: XP_022935984.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 504 bits (1298), Expect = 3.52e-180
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSG+QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. NCBI nr
Match: XP_023536479.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500 bits (1287), Expect = 1.74e-178
Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MAMLCASSS-TPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ 60
           MAMLCASSS TPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ
Sbjct: 1   MAMLCASSSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ 60

Query: 61  SKSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD 120
           SKSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD
Sbjct: 61  SKSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD 120

Query: 121 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180
           KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG
Sbjct: 121 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180

Query: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 240
           GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI
Sbjct: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 240

Query: 241 RDKRINKER 248
           RDKRINKER
Sbjct: 241 RDKRINKER 249

[Close]

BLAST of Csor.00g178700 vs. NCBI nr
Match: XP_022976844.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 496 bits (1276), Expect = 7.97e-177
Identity = 244/248 (98.39%), Postives = 245/248 (98.79%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 459 bits (1181), Expect = 2.42e-162
Identity = 227/248 (91.53%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HSTLNN + SNR IPR S V GFPLPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 504 bits (1298), Expect = 1.71e-180
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSG+QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. ExPASy TrEMBL
Match: A0A6J1IPT4 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477096 PE=3 SV=1)

HSP 1 Score: 496 bits (1276), Expect = 3.86e-177
Identity = 244/248 (98.39%), Postives = 245/248 (98.79%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 459 bits (1181), Expect = 1.17e-162
Identity = 227/248 (91.53%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HSTLNN + SNR IPR S V GFPLPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 458 bits (1179), Expect = 2.36e-162
Identity = 227/248 (91.53%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HST NN + SNR IPRKS V GFPLPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 451 bits (1160), Expect = 1.86e-159
Identity = 220/248 (88.71%), Postives = 230/248 (92.74%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTF +HSTL NG+ SN+  PR S +  FPLP SKS  L TQT+I+L S S
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           K S +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 248
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Csor.00g178700 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 333.2 bits (853), Expect = 1.8e-91
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 0


Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60
           MA+LC+SS+         L++ S  + G  RKS   GF L    + +      + + + S
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSGIQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVV 120
           K  G+QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA DHVNT+KPW+VV
Sbjct: 61  K-RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of Csor.00g178700 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]

BLAST of Csor.00g178700 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:

BLAST of Csor.00g178700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYL9	2.5e-90	67.59	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P12629	4.1e-80	78.53	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P...	[more]
B8HMT1	3.4e-50	67.12	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
Q3MF94	7.5e-50	68.28	50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
B1WQT8	2.2e-49	69.47	50S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) ...	[more]

BLAST of Csor.00g178700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591772.1	2.48e-180	100.00	50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022935984.1	3.52e-180	99.60	50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]	[more]
XP_023536479.1	1.74e-178	99.60	50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976844.1	7.97e-177	98.39	50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima]	[more]
XP_022941245.1	2.42e-162	91.53	50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Csor.00g178700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6Z3	1.71e-180	99.60	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IPT4	3.86e-177	98.39	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FT16	1.17e-162	91.53	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IW42	2.36e-162	91.53	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0KZG1	1.86e-159	88.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1	[more]

BLAST of Csor.00g178700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78630.1	1.8e-91	67.59	Ribosomal protein L13 family protein	[more]
AT3G01790.1	1.2e-18	38.40	Ribosomal protein L13 family protein	[more]
AT3G01790.2	1.2e-18	38.40	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 246..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..248
None	No IPR available	PANTHER	PTHR11545:SF27	BNAA02G18970D PROTEIN	coord: 67..245
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 101..244 e-value: 8.7E-61 score: 205.9
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 107..240
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 107..237 e-value: 3.3E-56 score: 187.0
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 111..228 e-value: 4.2E-44 score: 149.5
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 67..245
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 27.352219
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 112..225 e-value: 3.92226E-64 score: 193.875
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g178700.m01	Csor.00g178700.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome