Csor.00g178310 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGATGGGGAAACGATTAGATACCGCTATTAGACAAGGGTTGTTGGTTTGTGTTGAGAACACTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGGTATGAGCTCTGTTCTGCACTCGGCTACTTGGATGAATTTAGATGCGTTTAGGGTTGATTAGTGCATGAGGAATGGTGGGGTAACTGGGAACGATGATGCTTGATGTTCTATATATTTGCACATGTTAGTGGTTCAGCATTGTATGATGGTGTGGCTGAAAACCCTTTGTTTGTAGTTGATGGAAAGACGTAGTTCATGCTATGTGAAGAGTGATTCTTATCCATCCTGTTTAGTTTGCTCCAAATTCATATGCATTTATCATTTTGACCATCTTCAAGTGCCTATGATTGGATAAAACATGTTTGTATTCATTTCACAAACTACATTTAGGCATCCTCCAATCAATTCAATGATGGGCAGGTTTATATCTCCTAGCCGTGGGCTTGAGCTGTTACAAATAGTATTAGAGTCATTCACCAGGTGGTGTGCCAACGAGGACGCTGGCACCCAAAGAGGGTGGATTGTGAGATCTCACGTCGGTTGGAGAGAGGATCGAAGCATTCCTTATAAGGGTGTGAAAACCTCTCCCTAGTAGACACGTTTTAGAATTGTGAGGCTGACGGCAATACGTAACGGACCGAAACAAACAATATCTATTAGCGGTGGGCTTGGGCTTGAGCTTGGGCTATTACAAGTTTCAGCTGGATCGAAGAATGTTCTTGCCATTGGACCTGGTAAGGCTTCTTTACCCTTTTGGTAGAAATCTGTGGTTGCCTGGTTGATTCTCCTCGTATCACTTGTCTCTCTCGTGTGAATATGCAGCACATAATCATGGTAAATTTAGTATTAGTTCATATTTGAACACTTCCCTATAGTTGTGTGCTTGGAAAATAGCACAAGACCAATCAATGACTATCAATATTTACTAGAAAGAAAGTGACAATCATAGAGATTCAAACACATAACCTTATAACCTCATACTCCGATATTATGTTAAATCACCACTGAATCCAAAAACGATGGATTACTGGAAATTTCGCTGTTAATTCATATTCTTAAGAGCATACATGTTCCCCATCTCTGTTTTAAACAGGGCCAAAGGAGTCCAGTGATTCAGTAACTGGGCAACTCCGCTCGACTAACCTCGAGGTCGTTGTGTCAGGGTATGCCCTGCAATGCAAACCCAGGAGGAGTATGATATCTTCATTGTTTATAATTTTTGTTGTAGTTTGTATGTGATGATAGAGTAAAGTGAGGGATTAAATTAATGTGTATTGAGGTATCTTTAGCACGTGAGATAGTGAGTGGGAAGAGGAGAGGGTGTCGTTGGAGTGTTCCCCATATCTCATCAACTTTCTTTGACCATGTCCCAACCATGTCCACATAATACCAATACACACTCATGTGCCCTTCCATCTTACTTTTATCCTCCCCTCATTGCTTGCTTGCTTCCAATTGTGGGTTTCTAAAAACCCATTTCTTTTTCAGTCCTCTTTACCTCTTTCAAATCTTGCTTGGTTGGTTCTGTGAGATCCGACATTGGTTGGAGAGGAAAACGAAATGTTCTTTATAAGGTCTGGAAACCTTTTCCTAACCTACACATTTCAAAAATCTTAAGAGAAAGCCCAAAAAAGACAATACTAACGGTGTGCTTGGGTGCTACAAAAACTTTATGGTTGTTTATATTTCTGGAAAGATAACTGGGATAGCCTTAGGCTATGGTGAATGTAATTTCAAAAAATTTCTGATTCCCGCTTGATTGCTTGATTTTGCTCTGTTTTTAATGTCCGTAGATCAGGATGCTGCAGCAGCTTTATTCTTTTTTTTTTTTTTTTTCCTTCCCTTCTGCTTTATTCAGTGTTAATCAATTTGATTATAATAATAAAGAAGAAGAAGAAAGTAATTGGTTAGTGCAGAAAGATAGGCATGTGATGTGATGAGCCAAAGATTGATTCATCCTTAAGTGAATCTGAAATCAGTAATCAATTATTATTATATTATTATTACCAATTATCACATGATTGACTCTGTTTCTGTAAAAAGGTAAAAAGTACAATGAATTGGCAGAGGAAACCTCAGATTTTTCTCAACATTCTCTGCATATTGGCCTATTGGAACCGCCATCGCCATCGGATCAGCCGGATTTTACTGCCATTCATGTTCCTCAGCTGCCCCATTTTCTTCTCTTTTGTTGCAAAAAGATCCACAGCCGTAG ATGTGGATGGGGAAACGATTAGATACCGCTATTAGACAAGGGTTGTTGGTTTGTGTTGAGAACACTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGCTTGGGCTATTACAAGTTTCAGCTGGATCGAAGAATGTTCTTGCCATTGGACCTGGGCCAAAGGAGTCCAGTGATTCAGTAACTGGGCAACTCCGCTCGACTAACCTCGAGGTCGTTGTGTCAGGAGGAAACCTCAGATTTTTCTCAACATTCTCTGCATATTGGCCTATTGGAACCGCCATCGCCATCGGATCAGCCGGATTTTACTGCCATTCATGTTCCTCAGCTGCCCCATTTTCTTCTCTTTTGTTGCAAAAAGATCCACAGCCGTAG ATGTGGATGGGGAAACGATTAGATACCGCTATTAGACAAGGGTTGTTGGTTTGTGTTGAGAACACTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGCTTGGGCTATTACAAGTTTCAGCTGGATCGAAGAATGTTCTTGCCATTGGACCTGGGCCAAAGGAGTCCAGTGATTCAGTAACTGGGCAACTCCGCTCGACTAACCTCGAGGTCGTTGTGTCAGGAGGAAACCTCAGATTTTTCTCAACATTCTCTGCATATTGGCCTATTGGAACCGCCATCGCCATCGGATCAGCCGGATTTTACTGCCATTCATGTTCCTCAGCTGCCCCATTTTCTTCTCTTTTGTTGCAAAAAGATCCACAGCCGTAG MWMGKRLDTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLRSTNLEVVVSGGNLRFFSTFSAYWPIGTAIAIGSAGFYCHSCSSAAPFSSLLLQKDPQP Homology
BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q8R2Y8 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus OX=10090 GN=Ptrh2 PE=1 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04 Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q5JDB8 (Peptidyl-tRNA hydrolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=pth PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04 Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q8U0N0 (Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=pth PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04 Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q3ZBL5 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus OX=9913 GN=PTRH2 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 9.2e-04 Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q9Y3E5 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens OX=9606 GN=PTRH2 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 9.2e-04 Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 0
BLAST of Csor.00g178310 vs. NCBI nr
Match: KAG6591734.1 (hypothetical protein SDJN03_14080, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 255 bits (652), Expect = 1.05e-85 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Csor.00g178310 vs. NCBI nr
Match: KAF9850641.1 (hypothetical protein H0E87_015027 [Populus deltoides]) HSP 1 Score: 77.4 bits (189), Expect = 1.30e-14 Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0
BLAST of Csor.00g178310 vs. NCBI nr
Match: XP_034890776.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Populus alba] >TKR99783.1 peptidyl-tRNA hydrolase 2, mitochondrial isoform X4 [Populus alba]) HSP 1 Score: 74.7 bits (182), Expect = 1.23e-13 Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0
BLAST of Csor.00g178310 vs. NCBI nr
Match: KAF9850639.1 (hypothetical protein H0E87_015027 [Populus deltoides]) HSP 1 Score: 74.7 bits (182), Expect = 1.23e-13 Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0
BLAST of Csor.00g178310 vs. NCBI nr
Match: XP_011019605.1 (PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X4 [Populus euphratica]) HSP 1 Score: 74.7 bits (182), Expect = 1.23e-13 Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A4U5PRY8 (Aminoacyl-tRNA hydrolase OS=Populus alba OX=43335 GN=D5086_0000192130 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 5.94e-14 Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A9PDF5 (Aminoacyl-tRNA hydrolase OS=Populus trichocarpa OX=3694 GN=POPTR_006G237900 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.31e-13 Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A1S3CRS9 (Aminoacyl-tRNA hydrolase OS=Cucumis melo OX=3656 GN=LOC103503602 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.37e-13 Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A1S3CQP0 (Aminoacyl-tRNA hydrolase OS=Cucumis melo OX=3656 GN=LOC103503602 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.26e-13 Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0
BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A6N2LAH3 (Aminoacyl-tRNA hydrolase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS163213 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 4.56e-13 Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Csor.00g178310 vs. TAIR 10
Match: AT4G32900.2 (Peptidyl-tRNA hydrolase II (PTH2) family protein ) HSP 1 Score: 64.3 bits (155), Expect = 8.0e-11 Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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