Csor.00g178310 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g178310
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionAminoacyl-tRNA hydrolase
LocationCsor_Chr09: 3099106 .. 3101369 (-)
RNA-Seq ExpressionCsor.00g178310
SyntenyCsor.00g178310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGATGGGGAAACGATTAGATACCGCTATTAGACAAGGGTTGTTGGTTTGTGTTGAGAACACTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGGTATGAGCTCTGTTCTGCACTCGGCTACTTGGATGAATTTAGATGCGTTTAGGGTTGATTAGTGCATGAGGAATGGTGGGGTAACTGGGAACGATGATGCTTGATGTTCTATATATTTGCACATGTTAGTGGTTCAGCATTGTATGATGGTGTGGCTGAAAACCCTTTGTTTGTAGTTGATGGAAAGACGTAGTTCATGCTATGTGAAGAGTGATTCTTATCCATCCTGTTTAGTTTGCTCCAAATTCATATGCATTTATCATTTTGACCATCTTCAAGTGCCTATGATTGGATAAAACATGTTTGTATTCATTTCACAAACTACATTTAGGCATCCTCCAATCAATTCAATGATGGGCAGGTTTATATCTCCTAGCCGTGGGCTTGAGCTGTTACAAATAGTATTAGAGTCATTCACCAGGTGGTGTGCCAACGAGGACGCTGGCACCCAAAGAGGGTGGATTGTGAGATCTCACGTCGGTTGGAGAGAGGATCGAAGCATTCCTTATAAGGGTGTGAAAACCTCTCCCTAGTAGACACGTTTTAGAATTGTGAGGCTGACGGCAATACGTAACGGACCGAAACAAACAATATCTATTAGCGGTGGGCTTGGGCTTGAGCTTGGGCTATTACAAGTTTCAGCTGGATCGAAGAATGTTCTTGCCATTGGACCTGGTAAGGCTTCTTTACCCTTTTGGTAGAAATCTGTGGTTGCCTGGTTGATTCTCCTCGTATCACTTGTCTCTCTCGTGTGAATATGCAGCACATAATCATGGTAAATTTAGTATTAGTTCATATTTGAACACTTCCCTATAGTTGTGTGCTTGGAAAATAGCACAAGACCAATCAATGACTATCAATATTTACTAGAAAGAAAGTGACAATCATAGAGATTCAAACACATAACCTTATAACCTCATACTCCGATATTATGTTAAATCACCACTGAATCCAAAAACGATGGATTACTGGAAATTTCGCTGTTAATTCATATTCTTAAGAGCATACATGTTCCCCATCTCTGTTTTAAACAGGGCCAAAGGAGTCCAGTGATTCAGTAACTGGGCAACTCCGCTCGACTAACCTCGAGGTCGTTGTGTCAGGGTATGCCCTGCAATGCAAACCCAGGAGGAGTATGATATCTTCATTGTTTATAATTTTTGTTGTAGTTTGTATGTGATGATAGAGTAAAGTGAGGGATTAAATTAATGTGTATTGAGGTATCTTTAGCACGTGAGATAGTGAGTGGGAAGAGGAGAGGGTGTCGTTGGAGTGTTCCCCATATCTCATCAACTTTCTTTGACCATGTCCCAACCATGTCCACATAATACCAATACACACTCATGTGCCCTTCCATCTTACTTTTATCCTCCCCTCATTGCTTGCTTGCTTCCAATTGTGGGTTTCTAAAAACCCATTTCTTTTTCAGTCCTCTTTACCTCTTTCAAATCTTGCTTGGTTGGTTCTGTGAGATCCGACATTGGTTGGAGAGGAAAACGAAATGTTCTTTATAAGGTCTGGAAACCTTTTCCTAACCTACACATTTCAAAAATCTTAAGAGAAAGCCCAAAAAAGACAATACTAACGGTGTGCTTGGGTGCTACAAAAACTTTATGGTTGTTTATATTTCTGGAAAGATAACTGGGATAGCCTTAGGCTATGGTGAATGTAATTTCAAAAAATTTCTGATTCCCGCTTGATTGCTTGATTTTGCTCTGTTTTTAATGTCCGTAGATCAGGATGCTGCAGCAGCTTTATTCTTTTTTTTTTTTTTTTTCCTTCCCTTCTGCTTTATTCAGTGTTAATCAATTTGATTATAATAATAAAGAAGAAGAAGAAAGTAATTGGTTAGTGCAGAAAGATAGGCATGTGATGTGATGAGCCAAAGATTGATTCATCCTTAAGTGAATCTGAAATCAGTAATCAATTATTATTATATTATTATTACCAATTATCACATGATTGACTCTGTTTCTGTAAAAAGGTAAAAAGTACAATGAATTGGCAGAGGAAACCTCAGATTTTTCTCAACATTCTCTGCATATTGGCCTATTGGAACCGCCATCGCCATCGGATCAGCCGGATTTTACTGCCATTCATGTTCCTCAGCTGCCCCATTTTCTTCTCTTTTGTTGCAAAAAGATCCACAGCCGTAG

mRNA sequence

ATGTGGATGGGGAAACGATTAGATACCGCTATTAGACAAGGGTTGTTGGTTTGTGTTGAGAACACTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGCTTGGGCTATTACAAGTTTCAGCTGGATCGAAGAATGTTCTTGCCATTGGACCTGGGCCAAAGGAGTCCAGTGATTCAGTAACTGGGCAACTCCGCTCGACTAACCTCGAGGTCGTTGTGTCAGGAGGAAACCTCAGATTTTTCTCAACATTCTCTGCATATTGGCCTATTGGAACCGCCATCGCCATCGGATCAGCCGGATTTTACTGCCATTCATGTTCCTCAGCTGCCCCATTTTCTTCTCTTTTGTTGCAAAAAGATCCACAGCCGTAG

Coding sequence (CDS)

ATGTGGATGGGGAAACGATTAGATACCGCTATTAGACAAGGGTTGTTGGTTTGTGTTGAGAACACTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGCTTGGGCTATTACAAGTTTCAGCTGGATCGAAGAATGTTCTTGCCATTGGACCTGGGCCAAAGGAGTCCAGTGATTCAGTAACTGGGCAACTCCGCTCGACTAACCTCGAGGTCGTTGTGTCAGGAGGAAACCTCAGATTTTTCTCAACATTCTCTGCATATTGGCCTATTGGAACCGCCATCGCCATCGGATCAGCCGGATTTTACTGCCATTCATGTTCCTCAGCTGCCCCATTTTCTTCTCTTTTGTTGCAAAAAGATCCACAGCCGTAG

Protein sequence

MWMGKRLDTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLRSTNLEVVVSGGNLRFFSTFSAYWPIGTAIAIGSAGFYCHSCSSAAPFSSLLLQKDPQP
Homology
BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q8R2Y8 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus OX=10090 GN=Ptrh2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 8   DTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQL 67
           DT I+  LL   +  GL   ++ DAGRT     Q+  GS+ VL IGPGP E  D VTG L
Sbjct: 126 DTLIQ--LLTHAKTLGLTVSLIQDAGRT-----QIEPGSRTVLGIGPGPVELIDEVTGHL 179

Query: 68  R 69
           +
Sbjct: 186 K 179

BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q5JDB8 (Peptidyl-tRNA hydrolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=pth PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 69
           E  GLPT ++ DA     GL ++  G+  VLAIGPGP+E  D VTG L+
Sbjct: 73  EKLGLPTALIKDA-----GLTEIPPGTVTVLAIGPGPEEVVDKVTGHLK 116

BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q8U0N0 (Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=pth PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 69
           E  GLPT ++ DA     GL ++  G+  VLAIGPGP+E  D VTG L+
Sbjct: 74  EKLGLPTALIRDA-----GLTEIPPGTITVLAIGPGPEEVVDKVTGHLK 117

BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q3ZBL5 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus OX=9913 GN=PTRH2 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-04
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 0

Query: 15  LLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 69
           LL   +  GL   ++ DAGRT     Q++ GS+ VL IGPGP +  D VTG L+
Sbjct: 129 LLTHAKVLGLTVSLIQDAGRT-----QIAPGSRTVLGIGPGPADLIDKVTGHLK 177

BLAST of Csor.00g178310 vs. ExPASy Swiss-Prot
Match: Q9Y3E5 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens OX=9606 GN=PTRH2 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-04
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 0

Query: 15  LLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 69
           LL   +  GL   ++ DAGRT     Q++ GS+ VL IGPGP +  D VTG L+
Sbjct: 129 LLAHAKMLGLTVSLIQDAGRT-----QIAPGSQTVLGIGPGPADLIDKVTGHLK 177

BLAST of Csor.00g178310 vs. NCBI nr
Match: KAG6591734.1 (hypothetical protein SDJN03_14080, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (652), Expect = 1.05e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MWMGKRLDTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESS 60
           MWMGKRLDTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESS
Sbjct: 1   MWMGKRLDTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESS 60

Query: 61  DSVTGQLRSTNLEVVVSGGNLRFFSTFSAYWPIGTAIAIGSAGFYCHSCSSAAPFSSLLL 120
           DSVTGQLRSTNLEVVVSGGNLRFFSTFSAYWPIGTAIAIGSAGFYCHSCSSAAPFSSLLL
Sbjct: 61  DSVTGQLRSTNLEVVVSGGNLRFFSTFSAYWPIGTAIAIGSAGFYCHSCSSAAPFSSLLL 120

Query: 121 QKDPQP 126
           QKDPQP
Sbjct: 121 QKDPQP 126

BLAST of Csor.00g178310 vs. NCBI nr
Match: KAF9850641.1 (hypothetical protein H0E87_015027 [Populus deltoides])

HSP 1 Score: 77.4 bits (189), Expect = 1.30e-14
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 7   LDTAIRQGLLVCVENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQ 66
           +   IR  +    EN GLPTFVVADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+
Sbjct: 139 ISLLIRNKIREAAENIGLPTFVVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGK 195

Query: 67  LR 68
           LR
Sbjct: 199 LR 195

BLAST of Csor.00g178310 vs. NCBI nr
Match: XP_034890776.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Populus alba] >TKR99783.1 peptidyl-tRNA hydrolase 2, mitochondrial isoform X4 [Populus alba])

HSP 1 Score: 74.7 bits (182), Expect = 1.23e-13
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTFVVADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+LR
Sbjct: 145 ENIGLPTFVVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGKLR 188

BLAST of Csor.00g178310 vs. NCBI nr
Match: KAF9850639.1 (hypothetical protein H0E87_015027 [Populus deltoides])

HSP 1 Score: 74.7 bits (182), Expect = 1.23e-13
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTFVVADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+LR
Sbjct: 145 ENIGLPTFVVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGKLR 188

BLAST of Csor.00g178310 vs. NCBI nr
Match: XP_011019605.1 (PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X4 [Populus euphratica])

HSP 1 Score: 74.7 bits (182), Expect = 1.23e-13
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTFVVADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+LR
Sbjct: 145 ENIGLPTFVVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGKLR 188

BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A4U5PRY8 (Aminoacyl-tRNA hydrolase OS=Populus alba OX=43335 GN=D5086_0000192130 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.94e-14
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTFVVADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+LR
Sbjct: 145 ENIGLPTFVVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGKLR 188

BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A9PDF5 (Aminoacyl-tRNA hydrolase OS=Populus trichocarpa OX=3694 GN=POPTR_006G237900 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.31e-13
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTF VADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+LR
Sbjct: 145 ENIGLPTFAVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGKLR 188

BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A1S3CRS9 (Aminoacyl-tRNA hydrolase OS=Cucumis melo OX=3656 GN=LOC103503602 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.37e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTFVVADAGRTQ     VSAGSK VLAIGPGPKE+ D+VTG+LR
Sbjct: 147 ENIGLPTFVVADAGRTQ-----VSAGSKTVLAIGPGPKEAIDAVTGKLR 190

BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A1S3CQP0 (Aminoacyl-tRNA hydrolase OS=Cucumis melo OX=3656 GN=LOC103503602 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.26e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN GLPTFVVADAGRTQ     VSAGSK VLAIGPGPKE+ D+VTG+LR
Sbjct: 160 ENIGLPTFVVADAGRTQ-----VSAGSKTVLAIGPGPKEAIDAVTGKLR 203

BLAST of Csor.00g178310 vs. ExPASy TrEMBL
Match: A0A6N2LAH3 (Aminoacyl-tRNA hydrolase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS163213 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.56e-13
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQLR 68
           EN  LPTFVVADAGRTQ     VSAGSK VLA+GPGPKES DSVTG+LR
Sbjct: 145 ENLALPTFVVADAGRTQ-----VSAGSKTVLAVGPGPKESVDSVTGKLR 188

BLAST of Csor.00g178310 vs. TAIR 10
Match: AT4G32900.2 (Peptidyl-tRNA hydrolase II (PTH2) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 20  ENTGLPTFVVADAGRTQLGLLQVSAGSKNVLAIGPGPKESSDSVTGQL 68
           E+ GLPTFVVADAGRT     +V+AGS+ VLA+GPGPKE  DS+TG+L
Sbjct: 148 ESVGLPTFVVADAGRT-----EVAAGSRTVLAVGPGPKELVDSITGRL 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8R2Y81.4e-0445.90Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus OX=10090 GN=Ptrh2 PE=1 ... [more]
Q5JDB82.4e-0448.98Peptidyl-tRNA hydrolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM ... [more]
Q8U0N03.2e-0448.98Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / J... [more]
Q3ZBL59.2e-0444.44Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus OX=9913 GN=PTRH2 PE=2 SV=... [more]
Q9Y3E59.2e-0444.44Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens OX=9606 GN=PTRH2 PE=1 S... [more]
Match NameE-valueIdentityDescription
KAG6591734.11.05e-85100.00hypothetical protein SDJN03_14080, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF9850641.11.30e-1466.13hypothetical protein H0E87_015027 [Populus deltoides][more]
XP_034890776.11.23e-1379.59peptidyl-tRNA hydrolase 2, mitochondrial [Populus alba] >TKR99783.1 peptidyl-tRN... [more]
KAF9850639.11.23e-1379.59hypothetical protein H0E87_015027 [Populus deltoides][more]
XP_011019605.11.23e-1379.59PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X4 [Populus euphrati... [more]
Match NameE-valueIdentityDescription
A0A4U5PRY85.94e-1479.59Aminoacyl-tRNA hydrolase OS=Populus alba OX=43335 GN=D5086_0000192130 PE=4 SV=1[more]
A9PDF52.31e-1377.55Aminoacyl-tRNA hydrolase OS=Populus trichocarpa OX=3694 GN=POPTR_006G237900 PE=2... [more]
A0A1S3CRS93.37e-1377.55Aminoacyl-tRNA hydrolase OS=Cucumis melo OX=3656 GN=LOC103503602 PE=4 SV=1[more]
A0A1S3CQP04.26e-1377.55Aminoacyl-tRNA hydrolase OS=Cucumis melo OX=3656 GN=LOC103503602 PE=4 SV=1[more]
A0A6N2LAH34.56e-1377.55Aminoacyl-tRNA hydrolase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS163213 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT4G32900.28.0e-1166.67Peptidyl-tRNA hydrolase II (PTH2) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023476Peptidyl-tRNA hydrolase II domain superfamilyGENE3D3.40.1490.10Bit1coord: 11..74
e-value: 2.8E-9
score: 38.8
IPR023476Peptidyl-tRNA hydrolase II domain superfamilySUPERFAMILY102462Peptidyl-tRNA hydrolase IIcoord: 15..68
IPR002833Peptidyl-tRNA hydrolase, PTH2PFAMPF01981PTH2coord: 20..68
e-value: 1.4E-7
score: 31.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g178310.m01Csor.00g178310.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005829 cytosol
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity