Csor.00g178030 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g178030
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 2925480 .. 2929543 (-)
RNA-Seq ExpressionCsor.00g178030
SyntenyCsor.00g178030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATCCATTTCTTCTGTTCAGGTTTTCATTCGTTCTCTTAGAACTCTTCCTCCGATTTTTATTCTTCTTGAACTTACATTGATCTCCATTTTCGTGCTTCTCAACTTACATTCATGCTTACTACGCGCGTCTTTGATATAACTTCCCGCTCCGATTTTATTTCAATGCAGTTGAGCTTGTATTCTGCTATTCTTATGTCTTCTCAGTTCGATCACTTCCTGCATCGGCATGGAATATCGCCTCGGAAGATAGTTCTCAGATCTGTTTGGTTAGCTTTAAACCGCGAGGAGAAGAAAACTGAAAAAGGCGAGAGTCCGAGTTCAACTGTTCCTCTGTGCCTGCGGATTACCAGGTAATCTTTTTTCTAGCATATTCTTGTGAATCGAACGAAGTATCACGATGTAGAATCGCTTTATTGCAGAATTTACTTTTCGTAGTAAGTTGTCTGCACGCTTTACGTACTTACTACGTTTTTCTTACTGAGAAGCAGTGCTTGATCTAGTGCACGATATTTACAGTTTGTCTTACCGTTTCACACTGCATCTGTTTGGATTAATCTGAAGCGAACATAAAATTATGAGTGGACTGATGCGGTCTGGCATTTATTTCACCTGTCTCTATGTGTCCGCGCGTGTATGTGTGTGACAATATGATACGACTTTGTTTATTTGTTTTTATTTTGTCACTGTTCGCTTTACTCGTCAGATCATTTGTTATATTGAGATATTGACAAGGATGCTTGCTTTTGTGCTTGTACGTAATCTTTAAACACGAATTTCATAGCACTTGCATAATACGATAGTTGAAAATGGTAGAGCAGGATGTTTCATTGCTTCAAGTGTTTGGTTCTTTAGATACTGTACGGGATTTAAGTTCTCAAAGTATTCTGGAGATGACCTTTAGTTTTCCTTTATGTTTTTGTGTTTTTTAGGCATTAGAGATTCCATGGACAAGGTTATCTGTTTTTATATTTGCGCATCCGTAACTTGTTTGGTCGTTAACGTAGGCACACGAAATGAAACTGACTTGTTTATAAGAAATTAATTATGGATAATATTTATTAATTAATAATGAGTTCAGATTCATGCTCTGTTGAATGCTATATTTGTCGAATTCATTAAAAGCATGCTTTTAGTGACTTAGTTACACAAGATCATCTTCGATGCCTTTGAGTGTAGGGTACTGTAAGTTTTGTTGTTACTTAGTACTCATAACTTTTATTTTGGTACGCTAGCAGTCTTCTTTGCCATGAAAACTGCAGCTAATCATTTGAGTTAGTAGTTGTTAACTCGCCTCCTGAAGCATGGTAGCAATCTTGAATAAGCAATAGTTAAACACTATTTATTCTCTTATTCTGGTTAGTATCTCAGCTACTTTTAATTGCTTTGGCAAATGCGTTGGAATCTGAAGACACGTCTGTTTACTTATTTAGTGTTTTTATAATGGAGCTAAAAATTAATATACATTGGTTTGAACCAGTTAGCCTAGCCCAGGGCTTGCCTTTTCGTTACCTTTTCCCTATTTTGATCTATGGTACAAATTTAAAACACATGATATTAGTTGGTCAAATAGCAGTCAGACTTGAACTAGAGACCTTTAGTGTGTTAGACTAACATGATAACCAACTACACCACGATACCAAATGATACACAAATATTGTTCCATATGAAGATACAATATAATAAAGACCGTAAGCCTGCTGCTATAAGAGTACAAACCGACGGTGGAGTAAAAAGAAAGATGAAATTAGGGTTTTAAACCTTAGTTTCGTGGCCATCATTAAAGAAAAGATTGAAAACAAGGATATGTTTTTTACATTTCAAGAAAGACCACTTGTAAATACAGTGATCAAATTTGAAATTTGTGAATCCGTTCTGTAGTATATGATACCTACATAGATTGTTCAAAAAAGGATGATAGCAGTTGTTCTAGTCTAAGATCATTCTCTCTGATGTAGAACAGGAATTGTAAGAATGTGAGAACCATAATAGTGAGGATGGTAAACAGACATTGAACTAGAGTTATAAACGCCAATTTATTATAGGTTTGGATTGAACAATATTTTGTTGGTGTAGCACCACTGCACCACACCCCTATGTGTGGTGTTCCATCATGTGTCTGGTGACCATCATTGAATTAAGCTTACGATGAAGGTTCTTTGGGGTTTTTGTATTAAAAAAAGGTACAACACCCCACATCCAAGATGGTCCGCTCCTCTTGTTTTGATTACAATCACTATTATTTGAGCTAAAGCCGTTTTCATCCTTATATCCTCATTGATGTAATTTTATTCCTGATCGTCTTGTTACCTAGTTTCTTCCTTTTTAGCTTTCAAATGTTCTTTTTCAAAGTCAGTGTCTTCTTTCTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTATATTTTCTTTTTATAGGAAACAAACATTTCATGGATAGATTGAAATAAACTACAAAAGAGTCGGAACAAGAGGATTTACAAAAAAAACTCTTCCACTGTGATATGAGGGAAGAAGGGGTGTAATTACAAAAGGGGGTTGTGTTTTTTACACCACAAAAGAGAAAAGCAAGTAGTATTCTGCATGGTTGTGTCAAAATTTGGTTGTTTTTCTGTGAAGACTCGAGTGTTGTGTTCTTTCCAAATACTCCAGAATAAAGCTCTGATGAATCTTTTTTCCTGTTTTTATTGGATGTCCTGTGAGACTGTCGGAAAGGAAAGTGTGATTTTTGTTGGGGAAGGCAGTAAACCAACCGAAGGATGCAATCAGCATGCTCCAATAGTGGCCAGCCAAGGGGCAATTGTTGATCAAGTGTATCTGCGTTTCAGCATCCCTGTAACAAAGAGGACATAATTGTGGGAGAGATAGAGCCAAGGGAGCCTCCTTTGTAGGCAATCTTGAGTTATGATGCATGAATGGCTGAGCTCCCATATAAAACTTTTGATCTTCTTAGGGTAAGCCCCTTTTCCAATATGAGAATAAATGTTATCACCTCCCGTGCAAGAAGAAGTCCATGTTTGAGAGAGGGACTTCGAAGAAAAAAATCTCATCCTTCTCAACGTTCCAAGGCCAGTAATCAGCATTCTGTGAGGAGGTAAATTGGGAAAGCAAGTTGGAGTGATTAACCCACTTTTCAATTTCAGCTTCTCTAATGTTCCTTCTGGAGAAAAGGTTCCAGGATCGATTCTCAGAGGATCAACAATTTCTTTCTGTCACCTGCATTCCATTATCTGTTAGTAACTCCTCCCATAGGCATTTTATATCTAATAATCATAGGTGTTCATGCATGCCACGAATTTCAATGTTTATTTTTTTTTGTTACTGAAAATAGGAATAATTTAACTAGATCATTCTAAAGCCTATTCTATTTATGCATTGTGCACATTATTGAAGGTCAGTGGCTCTAAGCTAGCTAGGAATACATTCAAGTTAGTAGCTAGATTATTTTCGATTCTCTAGAGGCCTTGTTTACTTTATAAGCCGTTATTAAGATTGTTTTCTGCAAAAGTACTTTATATATTGATGGTTTCTGTGATGTGCAATGCAATATGTTTGTGAACCGTTTGTAATTCTTTTTCCATCATTTTCTGCCATTTATATCATATCAATTTGGGAATGTACTTGTTTATGTGTAAGGTGGTCTCAAACTTTAGGTGTATATTAGCAACAATATTGCCAACAATTGTAACGTCTCATATATAACTTCTATGGAGTTTGGCCCTTCCCTTCATATTTAATAAATTACTTACTTTAAAAATTGAATTTATGCTGTTGGGAATATCGATGTACTGATTAAATTATTGTCTTGGATTTAATAATGACTCTGTTTAGTAGAGATGGGTTTTTTTAATAATAATTTATCTATTAAATTTCTTTGCTGAATTCTTACTTACTCTAATGTCATGCAATTTATATTTCTAAACAGACTGCTGGGACAGTTTACTCTAGTCGAGCAAGAGAGATTCAAGGTAAATGTTATATGCCCTTTCATGATGAGTATCATATACAACTGTTGGGTGGAATTAGTGTACGATAAATGTTCTTTTTAA

mRNA sequence

ATGCTATCCATTTCTTCTGTTCAGTTCGATCACTTCCTGCATCGGCATGGAATATCGCCTCGGAAGATAGTTCTCAGATCTGTTTGGTTAGCTTTAAACCGCGAGGAGAAGAAAACTGAAAAAGGCGAGAGTCCGAGTTCAACTGTTCCTCTGTGCCTGCGGATTACCAGACTGCTGGGACAGTTTACTCTAGTCGAGCAAGAGAGATTCAAGGTAAATGTTATATGCCCTTTCATGATGAGTATCATATACAACTGTTGGGTGGAATTAGTGTACGATAAATGTTCTTTTTAA

Coding sequence (CDS)

ATGCTATCCATTTCTTCTGTTCAGTTCGATCACTTCCTGCATCGGCATGGAATATCGCCTCGGAAGATAGTTCTCAGATCTGTTTGGTTAGCTTTAAACCGCGAGGAGAAGAAAACTGAAAAAGGCGAGAGTCCGAGTTCAACTGTTCCTCTGTGCCTGCGGATTACCAGACTGCTGGGACAGTTTACTCTAGTCGAGCAAGAGAGATTCAAGGTAAATGTTATATGCCCTTTCATGATGAGTATCATATACAACTGTTGGGTGGAATTAGTGTACGATAAATGTTCTTTTTAA

Protein sequence

MLSISSVQFDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSSTVPLCLRITRLLGQFTLVEQERFKVNVICPFMMSIIYNCWVELVYDKCSF
Homology
[Close]
BLAST of Csor.00g178030 vs. NCBI nr
Match: KAG6591706.1 (hypothetical protein SDJN03_14052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 6.94e-66
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MLSISSVQFDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSSTVPLCLRITRLLG 60
          MLSISSVQFDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSSTVPLCLRITRLLG
Sbjct: 1  MLSISSVQFDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSSTVPLCLRITRLLG 60

Query: 61 QFTLVEQERFKVNVICPFMMSIIYNCWVELVYDKCSF 97
          QFTLVEQERFKVNVICPFMMSIIYNCWVELVYDKCSF
Sbjct: 61 QFTLVEQERFKVNVICPFMMSIIYNCWVELVYDKCSF 97

[Close]
BLAST of Csor.00g178030 vs. NCBI nr
Match: KAG7024588.1 (hypothetical protein SDJN02_13406, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (333), Expect = 4.60e-38
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 6  SVQFDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSSTVPLCLRITRLLGQFTLV 65
          S QFDHFLHRHGISPRKIVLRSVWLAL REEKKTEKGESPSSTVPLCLRITRLLGQFTLV
Sbjct: 12 SSQFDHFLHRHGISPRKIVLRSVWLALIREEKKTEKGESPSSTVPLCLRITRLLGQFTLV 71

Query: 66 EQERFK 71
          EQERFK
Sbjct: 72 EQERFK 77

[Close]
BLAST of Csor.00g178030 vs. NCBI nr
Match: XP_022975998.1 (uncharacterized protein LOC111476529 isoform X1 [Cucurbita maxima])

HSP 1 Score: 118 bits (296), Expect = 2.85e-32
Identity = 63/83 (75.90%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 1  MLSISSVQ------------FDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSST 60
          MLSISSVQ            FDHFLH+HGIS RKIVLRSVWLAL REEKKTE  ESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRITRLLGQFTLVEQERFK 71
          VPLCLRITRLL QFT+VEQERF+
Sbjct: 61 VPLCLRITRLLEQFTVVEQERFE 83

[Close]
BLAST of Csor.00g178030 vs. NCBI nr
Match: XP_022975999.1 (uncharacterized protein LOC111476529 isoform X2 [Cucurbita maxima])

HSP 1 Score: 100 bits (248), Expect = 3.26e-25
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 1  MLSISSVQ------------FDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSST 60
          MLSISSVQ            FDHFLH+HGIS RKIVLRSVWLAL REEKKTE  ESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRITRLLGQFTL 64
          VPLCLRIT L  +FTL
Sbjct: 61 VPLCLRITSLSFRFTL 76

[Close]
BLAST of Csor.00g178030 vs. ExPASy TrEMBL
Match: A0A6J1IKU1 (uncharacterized protein LOC111476529 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476529 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.38e-32
Identity = 63/83 (75.90%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 1  MLSISSVQ------------FDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSST 60
          MLSISSVQ            FDHFLH+HGIS RKIVLRSVWLAL REEKKTE  ESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRITRLLGQFTLVEQERFK 71
          VPLCLRITRLL QFT+VEQERF+
Sbjct: 61 VPLCLRITRLLEQFTVVEQERFE 83

[Close]
BLAST of Csor.00g178030 vs. ExPASy TrEMBL
Match: A0A6J1IM83 (uncharacterized protein LOC111476529 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476529 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.58e-25
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 1  MLSISSVQ------------FDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSST 60
          MLSISSVQ            FDHFLH+HGIS RKIVLRSVWLAL REEKKTE  ESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRITRLLGQFTL 64
          VPLCLRIT L  +FTL
Sbjct: 61 VPLCLRITSLSFRFTL 76

The following BLAST results are available for this feature:
BLAST of Csor.00g178030 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g178030 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591706.16.94e-66100.00hypothetical protein SDJN03_14052, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024588.14.60e-3896.97hypothetical protein SDJN02_13406, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022975998.12.85e-3275.90uncharacterized protein LOC111476529 isoform X1 [Cucurbita maxima][more]
XP_022975999.13.26e-2572.37uncharacterized protein LOC111476529 isoform X2 [Cucurbita maxima][more]
BLAST of Csor.00g178030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IKU11.38e-3275.90uncharacterized protein LOC111476529 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IM831.58e-2572.37uncharacterized protein LOC111476529 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Csor.00g178030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g178030.m01Csor.00g178030.m01mRNA