Csor.00g178020 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g178020
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	MADS-box transcription factor 23-like isoform X3
Location	Csor_Chr09: 2923972 .. 2925098 (+)
RNA-Seq Expression	Csor.00g178020
Synteny	Csor.00g178020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGTACTAACGTATCCTATTCTATTCTATGTCGTTACATGTTACTTGATAAACACTAATACCAGAGGAAAATGCAATAAAGTGAAATGCAAAATGTAACTTCTTTCAATTCCTTAATGGCCCTAGCGTTAAGTGAATTGAGCCTAAAATCTTCCTCATTAACTCATTACCATGTATGCTTAATGAGATATGGGAATAGCATTTATTGACGACCAAGCATGACCCAAATGTATATTTCCTAACATACTTCCACATGCTGCTCAAGTTAAAGCTGATACACAAGCTGAAAGAAAATGAATCTTAGAAAAGTTCAAAACATCACTAATAGATAATAACTATCAGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCATGGCATCCGTATGAAGAAGGTATCTAACTATGTCATTTGTTAAATGCATTAGGTGTTATACTGAACTTTTACCTTCTTTGAGCAGGACAATATCTTAATGGATGAGATACAAGACCTAAATAGAAAGGTTAAGGAACTACGGCTCTGAAATTTTGTTCTCAATTGTTTTGGTTGCTAAATATCCTTTTTTTTTTTATACAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGTAAACCTAATTCATCAAGAAAATCTGGAATTACAGAAAAAGGTACAGATGTAGATAACTGGAACAACTTTAATTACTACCAAAAAGAAACTTAGGATTAAATTGTTAAGCCAATAAAACTTTGAGTTGTTTAGTTACCCTCAAAACAAAATTTTGACCATCCTAGGCCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTCTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGACCATGAGGCACCAGAAAGAGCTACAAAACTAGGGTACAATTACGAAAAAAATTCATTAATGTTCTACATGAATACAAATAAACTTTTCCAGGGTCACTATTTCAATCTTGTTCTTTTGATGGTTGCAGCAGACTATAG

mRNA sequence

ATGTTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCATGGCATCCGTATGAAGAAGGACAATATCTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGCCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTCTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGACCATGAGGCACCAGAAAGAGCTACAAAACTAGGACTATAG

Coding sequence (CDS)

ATGTTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCATGGCATCCGTATGAAGAAGGACAATATCTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGCCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTCTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGACCATGAGGCACCAGAAAGAGCTACAAAACTAGGACTATAG

Protein sequence

MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRKVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPERATKLGL

Homology

[Close]

BLAST of Csor.00g178020 vs. ExPASy Swiss-Prot
Match: A2RVQ5 (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 73/142 (51.41%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           +L++QL +L ENHRQMMGEEL+GLSV+ LQNLENQLE+SL G+RMKKD +L++EIQ LNR
Sbjct: 95  ILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNR 154

Query: 61  KVNLIHQDNMELYKK-----------------AYGTKDANGAHISSLTNGLSLGEDAGIP 120
           + NL+HQ+N++L+KK                   G K AN    S LTNGL + + +   
Sbjct: 155 EGNLVHQENLDLHKKVNLMHQQNMELHEKVSEVEGVKIAN--KNSLLTNGLDMRDTSNEH 214

Query: 121 IDLQLSQPQPQDHEAPERATKL 126
           + LQLSQPQ  DHE   +A +L
Sbjct: 215 VHLQLSQPQ-HDHETHSKAIQL 233

[Close]

BLAST of Csor.00g178020 vs. ExPASy Swiss-Prot
Match: Q6EP49 (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-23
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRK 61
           LRQQL +L ENHRQ+MGE+L+GL+VK+LQ+LENQLE+SL  +R KKD++L+DEI +LNRK
Sbjct: 96  LRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRK 155

Query: 62  VNLIHQDNM--------------ELYKKAYGTKDANGAHISSLT-NGLSLGEDAGIPIDL 121
            +L+HQ+NM              ELYKK Y T+  +  +  S T    ++ E   +P+ L
Sbjct: 156 GSLVHQENMELYKKISLIRQENAELYKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQL 215

Query: 122 QLSQ-PQPQDHEAPERATKLGL 128
            LS  PQ  D E    A KLGL
Sbjct: 216 GLSTLPQHSDAE-QSTAPKLGL 236

[Close]

BLAST of Csor.00g178020 vs. ExPASy Swiss-Prot
Match: Q38840 (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 6.8e-23
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRK 61
           LRQ+L SL EN+RQ+ G EL GLSVK+LQN+E+QLEMSL GIRMK++ IL +EI++L RK
Sbjct: 96  LRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRK 155

Query: 62  VNL--------------IHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQ 117
            NL              IHQ+N+ELYKKAYGT + NG     L + +    ++   + LQ
Sbjct: 156 RNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVDAV---YESHAQVRLQ 215

[Close]

BLAST of Csor.00g178020 vs. ExPASy Swiss-Prot
Match: Q9SZJ6 (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 64/138 (46.38%), Postives = 85/138 (61.59%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQ---- 60
           +LRQ+L +L ENHRQMMGE+L GLSV +L +LENQ+E+SL GIRM+K+ +L  EIQ    
Sbjct: 95  VLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQ 154

Query: 61  ----------DLNRKVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
                     DL+RKV  IHQ+N+ELYKKAY        H           +++   I L
Sbjct: 155 KRNLIHQENLDLSRKVQRIHQENVELYKKAYMANTNGFTHREVAV----ADDESHTQIRL 214

Query: 121 QLSQPQPQDHEAPERATK 125
           QLSQP+  D++ P RA +
Sbjct: 215 QLSQPEHSDYDTPPRANE 228

[Close]

BLAST of Csor.00g178020 vs. ExPASy Swiss-Prot
Match: Q6Z6W2 (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS57 PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-20
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRK 61
           LRQQL +L E+H+Q+MGEEL+GL V+DLQ LEN+LE+SL  IRM+KDN+L  EI++L+ K
Sbjct: 95  LRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVK 154

Query: 62  VNLIHQDN--------------MELYKKAY-----GTKDANGAHISSLTNGLSLGEDAGI 121
            +LIHQ+N              +ELY K       G  DAN +  SS      + ++A +
Sbjct: 155 GSLIHQENIELSRSLNVMSQQKLELYNKLQACEQRGATDANES--SSTPYSFRIIQNANM 214

Query: 122 PIDLQLSQPQPQDHEAPERAT-KLGL 128
           P  L+LSQ Q ++ E  + A  +LGL
Sbjct: 215 PPSLELSQSQQREGECSKTAAPELGL 238

[Close]

BLAST of Csor.00g178020 vs. NCBI nr
Match: KAG6591705.1 (Agamous-like MADS-box protein AGL16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252 bits (644), Expect = 1.89e-84
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR
Sbjct: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60

Query: 61  KVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPE 120
           KVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPE
Sbjct: 61  KVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPE 120

Query: 121 RATKLGL 127
           RATKLGL
Sbjct: 121 RATKLGL 127

[Close]

BLAST of Csor.00g178020 vs. NCBI nr
Match: XP_022975995.1 (MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 235 bits (600), Expect = 2.52e-76
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SL GIRMKK+ ILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPE 120
           KVNLIHQDN ELYKK YGTKDANGAHISSLTNGLS+GEDAGIPIDLQLSQPQPQDHEAPE
Sbjct: 155 KVNLIHQDNTELYKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDLQLSQPQPQDHEAPE 214

Query: 121 RATKLG 126
           RATKLG
Sbjct: 215 RATKLG 220

[Close]

BLAST of Csor.00g178020 vs. NCBI nr
Match: XP_022936836.1 (agamous-like MADS-box protein AGL16 isoform X2 [Cucurbita moschata])

HSP 1 Score: 228 bits (582), Expect = 1.17e-73
Identity = 120/140 (85.71%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSL GIRMKKD ILMDEIQDLNR
Sbjct: 79  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 138

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDNMELYKK               YGTKDANGAHISSLTNGLS GEDAGIPIDL
Sbjct: 139 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 198

Query: 121 QLSQPQPQDHEAPERATKLG 126
           QLSQPQPQ+H APERATKLG
Sbjct: 199 QLSQPQPQEHAAPERATKLG 218

[Close]

BLAST of Csor.00g178020 vs. NCBI nr
Match: XP_023536068.1 (MADS-box transcription factor 23-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229 bits (583), Expect = 1.38e-73
Identity = 120/140 (85.71%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLE+SL GIRMKKD ILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGIRMKKDKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDN ELYKK               YGTKDANGAHISSLTNGLS+GEDAGIPIDL
Sbjct: 155 KVNLIHQDNTELYKKVNLIRQENLELHEKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 214

Query: 121 QLSQPQPQDHEAPERATKLG 126
           QLSQPQPQDHEAPERATKLG
Sbjct: 215 QLSQPQPQDHEAPERATKLG 234

[Close]

BLAST of Csor.00g178020 vs. NCBI nr
Match: XP_023536067.1 (MADS-box transcription factor 23-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229 bits (583), Expect = 1.85e-73
Identity = 120/140 (85.71%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLE+SL GIRMKKD ILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGIRMKKDKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDN ELYKK               YGTKDANGAHISSLTNGLS+GEDAGIPIDL
Sbjct: 155 KVNLIHQDNTELYKKVNLIRQENLELHEKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 214

Query: 121 QLSQPQPQDHEAPERATKLG 126
           QLSQPQPQDHEAPERATKLG
Sbjct: 215 QLSQPQPQDHEAPERATKLG 234

[Close]

BLAST of Csor.00g178020 vs. ExPASy TrEMBL
Match: A0A6J1IIA1 (MADS-box transcription factor 23-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111476528 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.22e-76
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SL GIRMKK+ ILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDHEAPE 120
           KVNLIHQDN ELYKK YGTKDANGAHISSLTNGLS+GEDAGIPIDLQLSQPQPQDHEAPE
Sbjct: 155 KVNLIHQDNTELYKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDLQLSQPQPQDHEAPE 214

Query: 121 RATKLG 126
           RATKLG
Sbjct: 215 RATKLG 220

[Close]

BLAST of Csor.00g178020 vs. ExPASy TrEMBL
Match: A0A6J1F8L0 (agamous-like MADS-box protein AGL16 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443302 PE=4 SV=1)

HSP 1 Score: 228 bits (582), Expect = 5.66e-74
Identity = 120/140 (85.71%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSL GIRMKKD ILMDEIQDLNR
Sbjct: 79  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 138

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDNMELYKK               YGTKDANGAHISSLTNGLS GEDAGIPIDL
Sbjct: 139 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 198

Query: 121 QLSQPQPQDHEAPERATKLG 126
           QLSQPQPQ+H APERATKLG
Sbjct: 199 QLSQPQPQEHAAPERATKLG 218

[Close]

BLAST of Csor.00g178020 vs. ExPASy TrEMBL
Match: A0A6J1FEC1 (MADS-box transcription factor 23-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443302 PE=4 SV=1)

HSP 1 Score: 228 bits (582), Expect = 9.50e-74
Identity = 120/140 (85.71%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSL GIRMKKD ILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDNMELYKK               YGTKDANGAHISSLTNGLS GEDAGIPIDL
Sbjct: 155 KVNLIHQDNMELYKKVNLIHQENLELQKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDL 214

Query: 121 QLSQPQPQDHEAPERATKLG 126
           QLSQPQPQ+H APERATKLG
Sbjct: 215 QLSQPQPQEHAAPERATKLG 234

[Close]

BLAST of Csor.00g178020 vs. ExPASy TrEMBL
Match: A0A6J1IM79 (MADS-box transcription factor 23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476528 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.04e-73
Identity = 119/141 (84.40%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SL GIRMKK+ ILMDEIQDLNR
Sbjct: 95  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 154

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDN ELYKK               YGTKDANGAHISSLTNGLS+GEDAGIPIDL
Sbjct: 155 KVNLIHQDNTELYKKVNLIRQENLELHKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 214

Query: 121 QLSQPQPQDHEAPERATKLGL 127
           QLSQPQPQDHEAPERATKLGL
Sbjct: 215 QLSQPQPQDHEAPERATKLGL 235

[Close]

BLAST of Csor.00g178020 vs. ExPASy TrEMBL
Match: A0A6J1IFP7 (agamous-like MADS-box protein AGL16 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111476528 PE=4 SV=1)

HSP 1 Score: 226 bits (575), Expect = 7.24e-73
Identity = 118/140 (84.29%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SL GIRMKK+ ILMDEIQDLNR
Sbjct: 79  MLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNR 138

Query: 61  KVNLIHQDNMELYKKA--------------YGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
           KVNLIHQDN ELYKK               YGTKDANGAHISSLTNGLS+GEDAGIPIDL
Sbjct: 139 KVNLIHQDNTELYKKVNLIRQENLELHKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDL 198

Query: 121 QLSQPQPQDHEAPERATKLG 126
           QLSQPQPQDHEAPERATKLG
Sbjct: 199 QLSQPQPQDHEAPERATKLG 218

[Close]

BLAST of Csor.00g178020 vs. TAIR 10
Match: AT3G57230.1 (AGAMOUS-like 16 )

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-28
Identity = 73/142 (51.41%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNR 60
           +L++QL +L ENHRQMMGEEL+GLSV+ LQNLENQLE+SL G+RMKKD +L++EIQ LNR
Sbjct: 95  ILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNR 154

Query: 61  KVNLIHQDNMELYKK-----------------AYGTKDANGAHISSLTNGLSLGEDAGIP 120
           + NL+HQ+N++L+KK                   G K AN    S LTNGL + + +   
Sbjct: 155 EGNLVHQENLDLHKKVNLMHQQNMELHEKVSEVEGVKIAN--KNSLLTNGLDMRDTSNEH 214

Query: 121 IDLQLSQPQPQDHEAPERATKL 126
           + LQLSQPQ  DHE   +A +L
Sbjct: 215 VHLQLSQPQ-HDHETHSKAIQL 233

[Close]

BLAST of Csor.00g178020 vs. TAIR 10
Match: AT2G22630.1 (AGAMOUS-like 17 )

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-24
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRK 61
           LRQ+L SL EN+RQ+ G EL GLSVK+LQN+E+QLEMSL GIRMK++ IL +EI++L RK
Sbjct: 96  LRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRK 155

Query: 62  VNL--------------IHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQ 117
            NL              IHQ+N+ELYKKAYGT + NG     L + +    ++   + LQ
Sbjct: 156 RNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVDAV---YESHAQVRLQ 215

[Close]

BLAST of Csor.00g178020 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 107.5 bits (267), Expect = 8.3e-24
Identity = 64/138 (46.38%), Postives = 85/138 (61.59%), Query Frame = 0


Query: 1   MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQ---- 60
           +LRQ+L +L ENHRQMMGE+L GLSV +L +LENQ+E+SL GIRM+K+ +L  EIQ    
Sbjct: 95  VLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQ 154

Query: 61  ----------DLNRKVNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDL 120
                     DL+RKV  IHQ+N+ELYKKAY        H           +++   I L
Sbjct: 155 KRNLIHQENLDLSRKVQRIHQENVELYKKAYMANTNGFTHREVAV----ADDESHTQIRL 214

Query: 121 QLSQPQPQDHEAPERATK 125
           QLSQP+  D++ P RA +
Sbjct: 215 QLSQPEHSDYDTPPRANE 228

[Close]

BLAST of Csor.00g178020 vs. TAIR 10
Match: AT3G57230.2 (AGAMOUS-like 16 )

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 66/129 (51.16%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 14  RQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRKVNLIHQDNMELY 73
           RQMMGEEL+GLSV+ LQNLENQLE+SL G+RMKKD +L++EIQ LNR+ NL+HQ+N++L+
Sbjct: 107 RQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLH 166

Query: 74  KK-----------------AYGTKDANGAHISSLTNGLSLGEDAGIPIDLQLSQPQPQDH 126
           KK                   G K AN    S LTNGL + + +   + LQLSQPQ  DH
Sbjct: 167 KKVNLMHQQNMELHEKVSEVEGVKIAN--KNSLLTNGLDMRDTSNEHVHLQLSQPQ-HDH 226

[Close]

BLAST of Csor.00g178020 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 58/141 (41.13%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 2   LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLHGIRMKKDNILMDEIQDLNRK 61
           L+QQLQ L E HR+++GEEL+G++  DLQNLE+QL  SL G+R+KKD ++ +EI++LNRK
Sbjct: 97  LQQQLQYLQECHRKLVGEELSGMNANDLQNLEDQLVTSLKGVRLKKDQLMTNEIRELNRK 156

Query: 62  --------------VNLIHQDNMELYKKAYGTKDANGAHISSLTNGLSLGEDAGIPIDLQ 121
                         V+++ ++N++L KK +G    N    +S  + +S G     P  LQ
Sbjct: 157 GQIIQKENHELQNIVDIMRKENIKLQKKVHGR--TNAIEGNSSVDPISNGTTTYAPPQLQ 216

Query: 122 LSQPQPQDHEAP-ERATKLGL 128
           L Q QP    AP E++ +LGL
Sbjct: 217 LIQLQP----APREKSIRLGL 231

The following BLAST results are available for this feature:

BLAST of Csor.00g178020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVQ5	1.3e-26	51.41	Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=...	[more]
Q6EP49	3.1e-23	48.59	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38840	6.8e-23	51.16	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=...	[more]
Q9SZJ6	1.2e-22	46.38	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=...	[more]
Q6Z6W2	7.1e-20	44.52	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of Csor.00g178020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591705.1	1.89e-84	100.00	Agamous-like MADS-box protein AGL16, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022975995.1	2.52e-76	93.65	MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima]	[more]
XP_022936836.1	1.17e-73	85.71	agamous-like MADS-box protein AGL16 isoform X2 [Cucurbita moschata]	[more]
XP_023536068.1	1.38e-73	85.71	MADS-box transcription factor 23-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023536067.1	1.85e-73	85.71	MADS-box transcription factor 23-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g178020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIA1	1.22e-76	93.65	MADS-box transcription factor 23-like isoform X3 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F8L0	5.66e-74	85.71	agamous-like MADS-box protein AGL16 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FEC1	9.50e-74	85.71	MADS-box transcription factor 23-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IM79	2.04e-73	84.40	MADS-box transcription factor 23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1IFP7	7.24e-73	84.29	agamous-like MADS-box protein AGL16 isoform X4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Csor.00g178020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57230.1	9.4e-28	51.41	AGAMOUS-like 16	[more]
AT2G22630.1	4.8e-24	51.16	AGAMOUS-like 17	[more]
AT4G37940.1	8.3e-24	46.38	AGAMOUS-like 21	[more]
AT3G57230.2	1.1e-23	51.16	AGAMOUS-like 16	[more]
AT2G14210.1	1.2e-17	41.13	AGAMOUS-like 44	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 2..75 e-value: 6.8E-23 score: 80.7
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 1..83 score: 14.015815
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..127
None	No IPR available	PANTHER	PTHR48019:SF83	MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1	coord: 1..125
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g178020.m01	Csor.00g178020.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding