Csor.00g178010 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g178010
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 2910667 .. 2914160 (-)
RNA-Seq ExpressionCsor.00g178010
SyntenyCsor.00g178010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACAGTAGAAGAAGCAGAAGATGAATATATAGAACCTGGAGCTGGAGTATTCGTAGAGTTTGTTAGTGCTGGAGAAGATGATGACTCCAACATCAGCGTCGCAAAGGATCGCCAGTTCTTCCGCCTTCTTCAGCAGTCCGCTCCTACGCTTCGAGAAAGTCACTTGTCTGCTCGTCGAATTATCGATCCTCCTAATTACAATCTTGCATCTCCCCATGCTTAGATCCGCCACTCGTTTCTTCTATCCATTTTTCGGAGAAAGTTACAGAAAATAAGCGAAACTCCAATAAATTTCACAAGCAACAAGCTACAAAGAAGATCACAACAAAATCTAAAAAAGGAAACGAAAGAAAGGCTCTAAACACTTCGTTTTTCCTCGATATCGCACATCAAGGATACAGATACGAATTTACGGCATGGGATCAAAAAGAAAACAGAAGAAAATACTCCGATAACAGATGAAAAACGACGGACATGAAAACGAAAAAGCGAAGCAATCATGAAAGAACGTGAGAGAAAATGCGCAGGAAATTTCCAGGAAATCGTAACTTACTTTTGCGGTTGAGTGCGGAGCTGGTACGAATCAAGACAAAGAGAGATCAAACAGAATCAACGCTTTTCTACGGAGCGTTGTACTGAAACAGATTCACAGCATTTATCTGCACAGCGCCATATACGGAAAGGGGTCTGCGTCCTTATATTGTGAATGCCCCTCAAGCCTCCGGGGTTTTTATCTAGTGTGGCAAAAACCACTGGCGACTTCATTCCTATTCGTACACGTGGCCCAATCATATCTCGACATATTTACCTGTTTTTTTACTCCTCGAGGTTCGAGTCGTCCGTCATATTGATCATCGACGCGTGTGGCTATAGCTATGGGATACGGACACTGTTAAACTAGAGAAATTACTCTTAAATTTTAGAGTAAATTTCTAACATCTCAGTTATATATATATATATTTTTAGTTAAAATGGATAGGATATTAGTATGTAAAAATTGAAAGCACATTATTTATAACGCATTCACATTGATAAATGTCATATAAAAAGATATAAAAATTGATTATGTAAATGAAATAAATAAGAAAAAATAACTCATTTAAAGTTTTATATAGTTCTAAATCATTTAAAGTTTTATATAATTCTAAATAAACACGAATAATGTTGTGGAATTTTCATTTTTTTTTTAATAATTTTAAAATTTATTTATAATTTGAAAATAAAGTTAAAAGGGTAGAAAAGTTTAAATAATTAATTAAAACCAGAGGATATATGTAAATAATGTAAATAAATATATGTGTATTTAATTTAATGGTATTGGTAACGTATAAAACCATATTTTACCTTATATATTATTAATGTTTACTGTTTCCAATTTTATAGCATTTTAAATATTAAAGTAAATCTTTACCATTGCCAACCTTTTATAATTAATTATATTTATGGTTTAAAATTTTGGGTAAATTTTCCTCCGACGTGAACGGCAATCCTCAGACAACTTTGAGGCGATCAAGACGAATTCCAGTGATGAAGTCGCGGCGGCGAAAGCTTCCCCTCGGACGTTCCACTAAAGAACCCCACCCCAGCACAATACTAAACATGGAGGGGCAAAATGGGAAGAAAAGTTTCTCTATTATATATATTATTTAAATTAGGGACTGTGTGAAGAAGACAGTCACGTCACGTGGGCCACGTCGGCACCTCCACTTTCTTTTCTATGCTTTGTGCGGCTGGGAAAAAAAGAAGAATAACGGAAACAGCCGGTGTCTATTTGAACATTTTAAGGTTTCTAAAATTGGGAAATCCCAAAATCCCACGTGTCACCTCTTCAAACCCTTTCTCCAACTCACATTCCCGGATCCCCCGGTCATCAACTATTCTTATGAAATCATCGAGAAACGAACGTATATACAGTTATCTTTCTCCATTTAATTTATTAATATTATTATTAGTTCCCTCTCAAATATCATTTATTTGTTTTTTTTTTTTCTTTTTTCTAATGAATATTTTCAATAAATAAATTAAATTTTTGAATTTCAAATCTACCTTTTAATTCGACTTAATCAAATAGTATCTTTATTTCCTCGATTTAAGATTATATTTCAATACATCTTTTCTGAAATTATAATTTCACAAAACCAAATTCGCCAAAAATAATTGGGCTTAAATGGAATCTAGGCCCAGCCCGTAGGCCCATATTCTTTTTAAAAATAAAATATTAATATTCGTTTGTGATTATTCTAGATGATTATATTTTTATGCACACATAACACCTTCACTCTCTGTTATCACGAAAACGGGTATAGTTTGGATATAGTTGAGTGATAATTTATATATACTATAGATGTTTACGAGAGTAATGTTAGAATCGGTAGTAATCTACCTCCTCTTTCAATCTTCAAAATACATATTTAATTCGGAGTGGGATTGGAATTTGATGCATAATTTTTTTTTTCATTTTTAAATATTTTTGTTTAAAAAAAAATGTTAATATATATATTTTTTATTAAAAAATGTGAAACATTTTAATAATTTCAATAATATTATATAAGCAAAAATTTAATGTAATGTTAAATATAAATTCTAAAATCAAATATTAAAAAAAATGTTACGAAAAAAAAAATCTCAACCAATTTTGTTTTAATTTAAATACAATAAAGTCAGAATTAAAAAAATTTAAAAATAAAAATGATAAATAAGATTATATAAATTGTGAATATGTTTTTGTTTCAAAAAAATTATAATGTATATTTTTCATTATTTTTATTAAAAATGTGAAACATTTTAATAATTTCAATAATATTTTATAAGAAAAAATTTAATGTAATGTTAAATATAAATTCTAAAATCAAATATTAAAAAAAAAAAAAAGAAATCTCAACAAATTTAGTTTTAATTTAAATACAATAAAGTCGGAATTAGAAAGCGAAAAATTAAATTTAAAAATAGAAATGGTAAATGAGATTAGATAAATTGTGAATATCTAATATTTACAAAATTTTATGATACGATAGAAAAAAAAGATTTTGAAAATACTATTAGTTACGTTAAATCTATTTTAAAAGAGATATTAAATGTATCTGGAAATTAAGTAATTGAGCTACGTTTACTTTAATTTATTTATTTTAGTTAATAATTATTTTTATTATTCCCATTCCCATAAGCAAACGGAATTATATAATATATATATATATAATGGAATGGTAAAGGTATTTAATAGACGCTGAATCCTGTGAACGAACATTTTCTTCTCTCTTGGTGAAGGTGGGTGAGGGTCTTCGTTCGTGAAACTCATTCACTTAATTAAAGTAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGGTAATTTTCATTCAATCTCAGAGTCTTTCCATTTTATCCTCCTTTTTGATCTCCTCAAATTTCTCTGCAGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGA

mRNA sequence

ATGCAAACAGTAGAAGAAGCAGAAGATGAATATATAGAACCTGGAGCTGGAGTATTCGTAGAGTTTGTTAGTGCTGGAGAAGATGATGACTCCAACATCAGCGTCGCAAAGGATCGCCAGTTCTTCCGCCTTCTTCAGCAGTCCGCTCCTACGCTTCGAGAAATAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGA

Coding sequence (CDS)

ATGCAAACAGTAGAAGAAGCAGAAGATGAATATATAGAACCTGGAGCTGGAGTATTCGTAGAGTTTGTTAGTGCTGGAGAAGATGATGACTCCAACATCAGCGTCGCAAAGGATCGCCAGTTCTTCCGCCTTCTTCAGCAGTCCGCTCCTACGCTTCGAGAAATAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGA

Protein sequence

MQTVEEAEDEYIEPGAGVFVEFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLREIVESKSVGPRFETLSIHGYNFLRFNSPSPNFDIIGP
Homology
[Close]
BLAST of Csor.00g178010 vs. NCBI nr
Match: KAG6591704.1 (hypothetical protein SDJN03_14050, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178 bits (451), Expect = 3.46e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MQTVEEAEDEYIEPGAGVFVEFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLREIVESKS 60
          MQTVEEAEDEYIEPGAGVFVEFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLREIVESKS
Sbjct: 1  MQTVEEAEDEYIEPGAGVFVEFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLREIVESKS 60

Query: 61 VGPRFETLSIHGYNFLRFNSPSPNFDIIGP 90
          VGPRFETLSIHGYNFLRFNSPSPNFDIIGP
Sbjct: 61 VGPRFETLSIHGYNFLRFNSPSPNFDIIGP 90

[Close]
BLAST of Csor.00g178010 vs. NCBI nr
Match: RRT39898.1 (hypothetical protein B296_00035408 [Ensete ventricosum])

HSP 1 Score: 48.5 bits (114), Expect = 6.36e-05
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 13 EPGAGVFVEFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLRE 54
          EPGAG  VE   AGEDD +++SV KD +   LLQQ  P LRE
Sbjct: 5  EPGAGELVEAAGAGEDDQADLSVTKDGELLGLLQQPVPPLRE 46

[Close]
BLAST of Csor.00g178010 vs. ExPASy TrEMBL
Match: A0A426XK36 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00035408 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.08e-05
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 13 EPGAGVFVEFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLRE 54
          EPGAG  VE   AGEDD +++SV KD +   LLQQ  P LRE
Sbjct: 5  EPGAGELVEAAGAGEDDQADLSVTKDGELLGLLQQPVPPLRE 46

The following BLAST results are available for this feature:
BLAST of Csor.00g178010 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g178010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591704.13.46e-56100.00hypothetical protein SDJN03_14050, partial [Cucurbita argyrosperma subsp. sorori... [more]
RRT39898.16.36e-0557.14hypothetical protein B296_00035408 [Ensete ventricosum][more]
BLAST of Csor.00g178010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A426XK363.08e-0557.14Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00035408 PE=4 SV=1[more]
BLAST of Csor.00g178010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g178010.m01Csor.00g178010.m01mRNA