Csor.00g177970 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g177970
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	geranylgeranyl transferase type-2 subunit alpha 1
Location	Csor_Chr09: 2876201 .. 2876666 (+)
RNA-Seq Expression	Csor.00g177970
Synteny	Csor.00g177970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGACAACCACGCAAGCCTCAAAAGCCGGAGGAAGAAGAAGCTTCGGTGGTGGAAGCCGCAAAGCTTCTTGATCTGCAATCTTCGTTGCTCGCAGAACACCGTCAAAAGAAGTACAATATTTGAATTCCTCATCACTATTATGTTTTTCAGTTGCGGTCTAAGTTTTTCCGTAATTTGAATTTCAGATTGAATATTGTTGCTATGGTAAGGAAGAAGCTTTAGAGATCAGTGCTAATTTACTGGAAATGAATCCGTATCTGTATGCGGCTTGGAGCTACAGGAAACTTGTAGTTGGAACACTTTGAAGGAGATTCCATCAGACACAGAGTTGATCAAATCGAGTATCAATGAGAAGACTCGGAGTAGTAATTTGGATTTGAAGTTCTTTTTTCAATTCTCGACGAAGTTTTTGCGTGTAGTGAATCAGTCTGGACTCCGATTTCATTCTTGCGTTTCATAA

mRNA sequence

ATGCACAGACAACCACGCAAGCCTCAAAAGCCGGAGGAAGAAGAAGCTTCGGTGGTGGAAGCCGCAAAGCTTCTTGATCTGCAATCTTCGTTGCTCGCAGAACACCGTCAAAAGAAATTGAATATTGTTGCTATGGAAACTTGTAGTTGGAACACTTTGAAGGAGATTCCATCAGACACAGAGTTGATCAAATCGAGTATCAATGAGAAGACTCGGAGTAGTAATTTGGATTTGAAGTTCTTTTTTCAATTCTCGACGAAGTTTTTGCGTGTAGTGAATCAGTCTGGACTCCGATTTCATTCTTGCGTTTCATAA

Coding sequence (CDS)

ATGCACAGACAACCACGCAAGCCTCAAAAGCCGGAGGAAGAAGAAGCTTCGGTGGTGGAAGCCGCAAAGCTTCTTGATCTGCAATCTTCGTTGCTCGCAGAACACCGTCAAAAGAAATTGAATATTGTTGCTATGGAAACTTGTAGTTGGAACACTTTGAAGGAGATTCCATCAGACACAGAGTTGATCAAATCGAGTATCAATGAGAAGACTCGGAGTAGTAATTTGGATTTGAAGTTCTTTTTTCAATTCTCGACGAAGTTTTTGCGTGTAGTGAATCAGTCTGGACTCCGATTTCATTCTTGCGTTTCATAA

Protein sequence

MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCSWNTLKEIPSDTELIKSSINEKTRSSNLDLKFFFQFSTKFLRVVNQSGLRFHSCVS

Homology

[Close]

BLAST of Csor.00g177970 vs. NCBI nr
Match: KAG6591700.1 (hypothetical protein SDJN03_14046, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (505), Expect = 5.53e-64
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCSWNTLKEIPSDT 60
           MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCSWNTLKEIPSDT
Sbjct: 1   MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCSWNTLKEIPSDT 60

Query: 61  ELIKSSINEKTRSSNLDLKFFFQFSTKFLRVVNQSGLRFHSCVS 104
           ELIKSSINEKTRSSNLDLKFFFQFSTKFLRVVNQSGLRFHSCVS
Sbjct: 61  ELIKSSINEKTRSSNLDLKFFFQFSTKFLRVVNQSGLRFHSCVS 104

[Close]

BLAST of Csor.00g177970 vs. NCBI nr
Match: KAG7031768.1 (Geranylgeranyl transferase type-2 subunit alpha 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 4.43e-16
Identity = 58/120 (48.33%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 1   MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
           MH +PRKPQKPEEEEAS  EAAKL  LQS LL  H QK  +  A+E  +           
Sbjct: 22  MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYT 81

Query: 61  -WNT--------LKEIPSDTELIKSSINEKTRS-----SNLDLKFFFQFSTKFLRVVNQS 95
            WN         LKE PSDTE IK+ ++E+ R      S+LDLK F QFST+ L +VN+S
Sbjct: 82  AWNYRKLAVEHYLKESPSDTESIKAILDEELRVVSCHLSSLDLKLFVQFSTRLLLLVNRS 141

[Close]

BLAST of Csor.00g177970 vs. NCBI nr
Match: XP_022980946.1 (geranylgeranyl transferase type-2 subunit alpha 1 [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 5.32e-10
Identity = 45/99 (45.45%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEEEEAS  EAAKL  LQS LL  H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSDTE IK+ ++E+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDTESIKAILDEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. NCBI nr
Match: XP_022941215.1 (geranylgeranyl transferase type-2 subunit alpha 1 [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 5.32e-10
Identity = 45/99 (45.45%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEEEEAS  EAAKL  LQS LL  H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSDTE IK+ ++E+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDTESIKAILDEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. NCBI nr
Match: KAG6608130.1 (Geranylgeranyl transferase type-2 subunit alpha 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 5.32e-10
Identity = 45/99 (45.45%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEEEEAS  EAAKL  LQS LL  H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSDTE IK+ ++E+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDTESIKAILDEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL
Match: A0A6J1IV19 (geranylgeranyl transferase type-2 subunit alpha 1 OS=Cucurbita maxima OX=3661 GN=LOC111480246 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.58e-10
Identity = 45/99 (45.45%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEEEEAS  EAAKL  LQS LL  H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSDTE IK+ ++E+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDTESIKAILDEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL
Match: A0A6J1FSY4 (geranylgeranyl transferase type-2 subunit alpha 1 OS=Cucurbita moschata OX=3662 GN=LOC111446588 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.58e-10
Identity = 45/99 (45.45%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEEEEAS  EAAKL  LQS LL  H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSDTE IK+ ++E+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDTESIKAILDEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL
Match: A0A6J1C629 (geranylgeranyl transferase type-2 subunit alpha 1 OS=Momordica charantia OX=3673 GN=LOC111008311 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.80e-10
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKP KPEEEEAS  EAAKL  LQS LLA H QK     A++  +           
Sbjct: 1  MHGRPRKPLKPEEEEASAAEAAKLRSLQSQLLANHHQKNYAKEALDVSAKVLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSDTE IK+ +NE+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDTESIKAILNEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL
Match: A0A5A7UAV7 (Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009440 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.28e-09
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEE EAS VEAAKL +LQS LLA H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEAEASAVEAAKLRNLQSQLLANHHQKNYSKEALEVSANLLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSD   I++ +NE+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDIVSIEAILNEELRVAESALR 99

[Close]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL
Match: A0A1S3AZP9 (geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo OX=3656 GN=LOC103484326 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.28e-09
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MHRQPRKPQKPEEEEASVVEAAKLLDLQSSLLAEHRQKKLNIVAMETCS----------- 60
          MH +PRKPQKPEE EAS VEAAKL +LQS LLA H QK  +  A+E  +           
Sbjct: 1  MHGRPRKPQKPEEAEASAVEAAKLRNLQSQLLANHHQKNYSKEALEVSANLLEMNPDLYT 60

Query: 61 -WNT--------LKEIPSDTELIKSSINEKTRSSNLDLK 79
           WN         LKE PSD   I++ +NE+ R +   L+
Sbjct: 61 AWNYRKLAVEHYLKESPSDIVSIEAILNEELRVAESALR 99

The following BLAST results are available for this feature:

BLAST of Csor.00g177970 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g177970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591700.1	5.53e-64	100.00	hypothetical protein SDJN03_14046, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031768.1	4.43e-16	48.33	Geranylgeranyl transferase type-2 subunit alpha 1, partial [Cucurbita argyrosper...	[more]
XP_022980946.1	5.32e-10	45.45	geranylgeranyl transferase type-2 subunit alpha 1 [Cucurbita maxima]	[more]
XP_022941215.1	5.32e-10	45.45	geranylgeranyl transferase type-2 subunit alpha 1 [Cucurbita moschata]	[more]
KAG6608130.1	5.32e-10	45.45	Geranylgeranyl transferase type-2 subunit alpha 1, partial [Cucurbita argyrosper...	[more]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IV19	2.58e-10	45.45	geranylgeranyl transferase type-2 subunit alpha 1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1FSY4	2.58e-10	45.45	geranylgeranyl transferase type-2 subunit alpha 1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1C629	4.80e-10	45.45	geranylgeranyl transferase type-2 subunit alpha 1 OS=Momordica charantia OX=3673...	[more]
A0A5A7UAV7	2.28e-09	44.44	Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AZP9	2.28e-09	44.44	geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Csor.00g177970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g177970.m01	Csor.00g177970.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018342	protein prenylation
molecular_function	GO:0008318	protein prenyltransferase activity