Csor.00g177040 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAACCAAGGTGCAAAGAAGCGCAAGGAGGAGAACGCTCGTCATATGGCCAATCTCCGCCGCCTCATCATTGCATGCAATGTAAGGACTTCTTTTCGATCACTTCTCTCTATTTTTCTTCTCTCTTATGTCCGTAAATCATCCTTGTTGGTGATTTAGTATTCGCGTTGTAATTCTCTTGGAATTCTGGGCTGGAAGAAGTTGTAGGATGGTGTGTTTGTTACAAACAATCAACCATCTACTGGAAATTGTAATTTATCAGATAGGTTTAGATTCTGTTGGAAGCAAAGAAAATTTCATACTGTAAACATCCAATACTGGTAGATTTTATTTGCTTATTTATTATTCTTAGGTAAAAATCCGGAATTCTTGTTTTCCAAATTTGACTTGAAAATTGAAGTTGCGGCAGATACAGACGATTGTGCACGAGGAACATTGGAATGCAAGGTCGAGGAAGATCTCGAGTAATTTCTTCAGAGGAATATGAGATAACTAAAAAATTGAAGGATGGGAGAATTAGTTTTAGATTGTATATGTTTTGCAGTAAGTTTAGAGGTTATTTTGGTTTGTAAGTTCTTGTTTAGGATAGTTAAATCTTTTCTTAAGAGTTGTCAAAGGGATAAGCACCCTTCTGAGCATATCCTGAAACATCATCATATCATTTATTCATACAGCCTAAGAGGGTCCGTGTGTCTTTGTGGAACTGGTATGACTTCATTGTTTTGTTCTTAGACTTTAACTTGAATTGTTTATGCAGGCTACCTATATTTTGGTTCGGATGCTGATTTTTCATTCAAGTTTCACTTGGAAACATTGGATTGGTTTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTTCCAACATGGCAAACCCAACCTATGGTGATGAAGGTGAACTACTAGATGGTGGATTTGATATGAATACTGGTGGAATTTGTGGGTATGTCTTTAGTCTTCTTAATGTTTATCATTGCCTGTCAGTTTTATGCATGTTTTATCTTCTATATGAAGTATAATCGTTGAATACAGATCTGACATATTTAATTGTTCTAATGACAAAATTTTAAGTGAAACCAAGCTTTTAAACTTGCTAAGAATTGGTATGATATTGTTCACCTTAGATCAAATTTTTTGAGGAAGCTGGAGCTATTTTTCCTGGTTGTCATTCCAAAATTCAGTGCTAAGTGATTGAAATGGAAGGGTCTAGTGATGTGCGCGGCAGCATACTCTGGATATGATTTCCTCTCCTTCTGGATTTTATGACTGAAATCATTTGTAGCATTGTCAATTCATATTCAGTATACTTGTCAATTGGCTTAATATCTCTCGATAATAGCAATGTCCTTAATCATCATGGTGGTTTGGTCAGCTTCTTTACTGGTTATCTTTGAATTTTCTTTCTCAAGGAGATTTCAAATAGGATATAGACACGCACTTGCAGCTTAAGAATGTTTGGGGTTGTAAGTTTTTTGGGGAAATGGTCCTGCTCCATTGATTGCTTTGATCAATTGATGTGTTGGTTTGATCATCAAAGTGACAAATAAGTCCATGCTATGTTTTTGACCTGACAAAATATTAGGTGTTGTGGGGGTTTATCTATTTGGTTGTAAAGGTGGTGAACGTGGGAGCGAGATTGGGGTTAAATCATTTCATTCGGGTGGTTCTAGTCTAAGATGATTAATTGTCAGGATTTTAAAAATAGCTAAAGTTAAATTTTATCTCTGAATTTGAAAAAGTTGCATTTTCATGTTTCACTGCTTTCTCCTCTGAACTGGACAGAACCCTAATGGTGAAATACAGTGTAGTGCTTGCCAAGGCCACATTTCAGGCCATCAGACCTGCAACTGAATGTTGTTTCTTGTGTGCCTTGTAATTTATATGGTAATTTAAATCTCATTGTAGCAACAAGGAGCTCTAGTGTTTTTATAATAATTCTAAAGTAATTGACTTCAAAGCTATACTAGTTGTGAACCCATATGTTCATATGGCTACAAGTTCTTTGAAGCCTCACGGCATTGACATTAGGTGAAGGATTCACCTAGGACTGTTACCAGTTCCATATAGCGATTGTTACATCGTCAAAACTTGTGTCGTAAACGTTTTCTTGGCATTTGAACAATTAATCGAAACATCTTGATGGGTTGTCTTGTTTTGTGCAGCTACTTGCATGACATGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGGTAAGATCCAAATACTTATGAAATTGAACTTAGACATATTTAGTGTAATATAGCCTAGGCCTAATCCCGATTTTTGGGCGTGAAACAATGTCAATGATGTATTGTTCTGAAATGACTTTAAGTGTACATCTATTTATAAACGCATGTCTATCTCTAAACATTATTTTTCGTGTTACCTATATTACTAAATATTTGTGCAACTAATAGAAATTCAAAATAATACGCCCTATGACCAACAAGTTAAAGTAGGCATACTTCACTAGTTCTTAATATTCATTTCCTCATTGCTCTGCAGATTCCAGCATTTGGGGTATACAAATCATCTGGTTTAATTAAGGGATTATTGTCGCAAGGTTCAGAGGTAATCAAACCCCGGACCGTACCTGCTTTCTTTATTTAGTTGGGCCCGGTCTTCTCTTTTCATTTAGGCGTATACTTGCGTGTCGATTAGGATGAACCTGAGGACGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGGGTGAAGTTTGTAAAGACCAAGAATAGATAA ATGGCAAACCAAGGTGCAAAGAAGCGCAAGGAGGAGAACGCTCGTCATATGGCCAATCTCCGCCGCCTCATCATTGCATGCAATGCTACCTATATTTTGGTTCGGATGCTGATTTTTCATTCAAGTTTCACTTGGAAACATTGGATTGGTTTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTTCCAACATGGCAAACCCAACCTATGGTGATGAAGGTGAACTACTAGATGGTGGATTTGATATGAATACTGGTGGAATTTGTGGCTACTTGCATGACATGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCATCTGGTTTAATTAAGGGATTATTGTCGCAAGGTTCAGAGGATGAACCTGAGGACGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGGGTGAAGTTTGTAAAGACCAAGAATAGATAA ATGGCAAACCAAGGTGCAAAGAAGCGCAAGGAGGAGAACGCTCGTCATATGGCCAATCTCCGCCGCCTCATCATTGCATGCAATGCTACCTATATTTTGGTTCGGATGCTGATTTTTCATTCAAGTTTCACTTGGAAACATTGGATTGGTTTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTTCCAACATGGCAAACCCAACCTATGGTGATGAAGGTGAACTACTAGATGGTGGATTTGATATGAATACTGGTGGAATTTGTGGCTACTTGCATGACATGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCATCTGGTTTAATTAAGGGATTATTGTCGCAAGGTTCAGAGGATGAACCTGAGGACGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGGGTGAAGTTTGTAAAGACCAAGAATAGATAA MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFIPYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKGLLSQGSEDEPEDEKTRKKREKMEKKASRVKFVKTKNR Homology
BLAST of Csor.00g177040 vs. ExPASy Swiss-Prot
Match: Q54UB0 (Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem208 PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 3.0e-21 Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy Swiss-Prot
Match: Q6NYP0 (Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 5.3e-18 Identity = 58/167 (34.73%), Postives = 94/167 (56.29%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy Swiss-Prot
Match: Q3SZZ5 (Transmembrane protein 208 OS=Bos taurus OX=9913 GN=TMEM208 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14 Identity = 48/162 (29.63%), Postives = 87/162 (53.70%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy Swiss-Prot
Match: Q9CR96 (Transmembrane protein 208 OS=Mus musculus OX=10090 GN=Tmem208 PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13 Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy Swiss-Prot
Match: Q9BTX3 (Transmembrane protein 208 OS=Homo sapiens OX=9606 GN=TMEM208 PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13 Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 0
BLAST of Csor.00g177040 vs. NCBI nr
Match: XP_022937469.1 (transmembrane protein 208 homolog [Cucurbita moschata] >KAG6586034.1 Transmembrane protein 208, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 335 bits (860), Expect = 6.85e-116 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Csor.00g177040 vs. NCBI nr
Match: KAG7020810.1 (Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 334 bits (856), Expect = 2.79e-115 Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Csor.00g177040 vs. NCBI nr
Match: XP_023536815.1 (transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 334 bits (856), Expect = 2.79e-115 Identity = 172/173 (99.42%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Csor.00g177040 vs. NCBI nr
Match: XP_022969670.1 (transmembrane protein 208 homolog [Cucurbita maxima]) HSP 1 Score: 332 bits (850), Expect = 2.30e-114 Identity = 171/173 (98.84%), Postives = 171/173 (98.84%), Query Frame = 0
BLAST of Csor.00g177040 vs. NCBI nr
Match: XP_038889500.1 (transmembrane protein 208 homolog [Benincasa hispida]) HSP 1 Score: 320 bits (820), Expect = 8.61e-110 Identity = 163/173 (94.22%), Postives = 169/173 (97.69%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy TrEMBL
Match: A0A6J1FB96 (transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443871 PE=3 SV=1) HSP 1 Score: 335 bits (860), Expect = 3.32e-116 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy TrEMBL
Match: A0A6J1I0K5 (transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468625 PE=3 SV=1) HSP 1 Score: 332 bits (850), Expect = 1.11e-114 Identity = 171/173 (98.84%), Postives = 171/173 (98.84%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy TrEMBL
Match: A0A6J1KBQ8 (transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE=3 SV=1) HSP 1 Score: 315 bits (807), Expect = 4.00e-108 Identity = 160/173 (92.49%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy TrEMBL
Match: A0A6J1G433 (transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 PE=3 SV=1) HSP 1 Score: 315 bits (807), Expect = 4.00e-108 Identity = 160/173 (92.49%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Csor.00g177040 vs. ExPASy TrEMBL
Match: A0A1S3BUY1 (transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=3 SV=1) HSP 1 Score: 315 bits (806), Expect = 5.68e-108 Identity = 161/173 (93.06%), Postives = 166/173 (95.95%), Query Frame = 0
BLAST of Csor.00g177040 vs. TAIR 10
Match: AT2G23940.1 (Protein of unknown function (DUF788) ) HSP 1 Score: 261.9 bits (668), Expect = 3.6e-70 Identity = 130/173 (75.14%), Postives = 150/173 (86.71%), Query Frame = 0
BLAST of Csor.00g177040 vs. TAIR 10
Match: AT4G30500.1 (Protein of unknown function (DUF788) ) HSP 1 Score: 243.8 bits (621), Expect = 1.0e-64 Identity = 123/173 (71.10%), Postives = 144/173 (83.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|