Csor.00g176650 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g176650
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	VQ domain-containing protein
Location	Csor_Chr03: 24782 .. 25251 (-)
RNA-Seq Expression	Csor.00g176650
Synteny	Csor.00g176650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGGAGGCAGCCAAAGTCGTGTCGTGTGTACACCTTTGACGACGTTCATACAGACCGACACGACAACATTTCGAGAGGTTGTACAACGTCTAACCGGGCCATTAGAAACCCACACGCCACCATCGAAAGCAGTTGGATCAAAGAGGTCAACTAGACCTCCAAACTCCATGAAAGGAGACACTTGACTAGACCAAAGTTGCAAATTGTGAAACCATGTCCTTCCCATTTCAAGCCGGGCGAGCATCCTAGCTACGTTACGAGCCCGGTCGGGACGCCTTCAAAGATCTTGTCAAAGCTGTCAACTGGGGAGGACGAGAAGGAGTCGAATAAGGTGGAAGAAGAGAAGGCAATCAAAGAAAGGGGATTCTATCTGCATCCATCTCCAAGGTCAAAGCCTGGCTATGCTCAACCAGAGGCTTTCATTATTTCCTTTGGAATCTCCCAAAGCAACTCAGCACCATGA

mRNA sequence

ATGGAGAAGGGAGGCAGCCAAAGTCGTGTCGTGTGTACACCTTTGACGACGTTCATACAGACCGACACGACAACATTTCGAGAGCCGGGCGAGCATCCTAGCTACGTTACGAGCCCGGTCGGGACGCCTTCAAAGATCTTGTCAAAGCTGTCAACTGGGGAGGACGAGAAGGAGTCGAATAAGGTGGAAGAAGAGAAGGCAATCAAAGAAAGGGGATTCTATCTGCATCCATCTCCAAGGTCAAAGCCTGGCTATGCTCAACCAGAGGCTTTCATTATTTCCTTTGGAATCTCCCAAAGCAACTCAGCACCATGA

Coding sequence (CDS)

ATGGAGAAGGGAGGCAGCCAAAGTCGTGTCGTGTGTACACCTTTGACGACGTTCATACAGACCGACACGACAACATTTCGAGAGCCGGGCGAGCATCCTAGCTACGTTACGAGCCCGGTCGGGACGCCTTCAAAGATCTTGTCAAAGCTGTCAACTGGGGAGGACGAGAAGGAGTCGAATAAGGTGGAAGAAGAGAAGGCAATCAAAGAAAGGGGATTCTATCTGCATCCATCTCCAAGGTCAAAGCCTGGCTATGCTCAACCAGAGGCTTTCATTATTTCCTTTGGAATCTCCCAAAGCAACTCAGCACCATGA

Protein sequence

MEKGGSQSRVVCTPLTTFIQTDTTTFREPGEHPSYVTSPVGTPSKILSKLSTGEDEKESNKVEEEKAIKERGFYLHPSPRSKPGYAQPEAFIISFGISQSNSAP

Homology

[Close]

BLAST of Csor.00g176650 vs. ExPASy Swiss-Prot
Match: Q9FNP0 (VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-14
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 11  VCTPLTTFIQTDTTTFREPGEHPSYVTSPVGTPSKILSKLSTGEDEKES---NKVEEEKA 70
           +  P  +F  T TT   + G + + +TSPVGTPS + S LS  E E +S   N  EEEKA
Sbjct: 77  IVKPPLSFKPTGTTPSSKSG-NTNLLTSPVGTPSSLFSNLSLIEGEPDSCTTNIEEEEKA 136

Query: 71  IKERGFYLHPSPRSKPGYAQPEAFIISFGISQSNSA 104
           IKER FYLHPSPRSKPGY +PE   + F ++  NS+
Sbjct: 137 IKERRFYLHPSPRSKPGYTEPELLTL-FPLTSPNSS 170

[Close]

BLAST of Csor.00g176650 vs. NCBI nr
Match: KAG6603152.1 (VQ motif-containing protein 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (525), Expect = 4.91e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFREPGEHPSYVTSPVGTPSKILSKLSTGEDEKESN 60
           MEKGGSQSRVVCTPLTTFIQTDTTTFREPGEHPSYVTSPVGTPSKILSKLSTGEDEKESN
Sbjct: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFREPGEHPSYVTSPVGTPSKILSKLSTGEDEKESN 60

Query: 61  KVEEEKAIKERGFYLHPSPRSKPGYAQPEAFIISFGISQSNSAP 104
           KVEEEKAIKERGFYLHPSPRSKPGYAQPEAFIISFGISQSNSAP
Sbjct: 61  KVEEEKAIKERGFYLHPSPRSKPGYAQPEAFIISFGISQSNSAP 104

[Close]

BLAST of Csor.00g176650 vs. NCBI nr
Match: XP_022933110.1 (LOW QUALITY PROTEIN: VQ motif-containing protein 31-like [Cucurbita moschata])

HSP 1 Score: 131 bits (330), Expect = 1.50e-36
Identity = 81/141 (57.45%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------------------------------- 60
           MEKGGSQSRVVCTPLTTFIQTDTTTFRE                                
Sbjct: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFREVVQRLTGPSETHTPPSKAVGSKRSTTTSKLHE 60

Query: 61  --------------------PGEHPSYVTSPVGTPSKILSKLSTGEDEKESNKVEEEKAI 89
                                 EHPSYVTSPV TPSKILSKL  GEDEKESNKVEEEKAI
Sbjct: 61  RRHLTRPKLQIVKPCPSHFKSDEHPSYVTSPVRTPSKILSKLLMGEDEKESNKVEEEKAI 120

[Close]

BLAST of Csor.00g176650 vs. NCBI nr
Match: XP_038880928.1 (VQ motif-containing protein 31 [Benincasa hispida])

HSP 1 Score: 117 bits (292), Expect = 7.53e-31
Identity = 72/143 (50.35%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------------------------------- 60
           MEKGGSQS V C PLTTF+QTDTTTFRE                                
Sbjct: 1   MEKGGSQSHVGCKPLTTFVQTDTTTFREVVQRLTGPSESHTMQPKAFGSKRPTTASKLHE 60

Query: 61  ---------------------PGEHPSYVTSPVGTPSKILSKLSTGEDEKES-NKVEEEK 89
                                  EHPSY+TSPVGTPSKILSKLS G++EK+  N +EEEK
Sbjct: 61  RRHLTRPKLQIVKPCPSHFKPTTEHPSYITSPVGTPSKILSKLSIGDEEKDQLNNMEEEK 120

[Close]

BLAST of Csor.00g176650 vs. NCBI nr
Match: XP_031740607.1 (VQ motif-containing protein 31-like [Cucumis sativus])

HSP 1 Score: 112 bits (280), Expect = 6.35e-29
Identity = 71/145 (48.97%), Postives = 77/145 (53.10%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFREP------------------------------- 60
           MEKG SQS V C PLTTF+QTDT TFRE                                
Sbjct: 1   MEKGDSQSHVGCKPLTTFVQTDTKTFREVVQRLTGPSESHTTSSKGFGSRRPTTTSKLHE 60

Query: 61  ------------------------GEHPSYVTSPVGTPSKILSKLSTGEDEKES-NKVEE 89
                                   GEHPSY+TSP+GTPSKILSKLS G++EKE  N +EE
Sbjct: 61  RRQLITRPKLQIVKPCPSHFKATIGEHPSYITSPLGTPSKILSKLSIGDEEKEELNNMEE 120

[Close]

BLAST of Csor.00g176650 vs. NCBI nr
Match: XP_022149395.1 (VQ motif-containing protein 31 [Momordica charantia])

HSP 1 Score: 107 bits (268), Expect = 4.14e-27
Identity = 68/152 (44.74%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------------------------------- 60
           MEK  +QS V C PLTTF+QTDTTTFRE                                
Sbjct: 1   MEKAANQSLVGCKPLTTFVQTDTTTFREVVQRLTGPSESHTPPSKAAGSSKRPIATSKLH 60

Query: 61  ---------------------------PGEHPSYVTSPVGTPSKILSKLSTGEDEKESNK 93
                                        EHPS  +SP+GTPSKILSKLS G+ EKE N 
Sbjct: 61  ERRHLTRPKLQIVKPAASHFFKPTSCISSEHPSCTSSPLGTPSKILSKLSIGDGEKELNA 120

[Close]

BLAST of Csor.00g176650 vs. ExPASy TrEMBL
Match: A0A6J1F404 (LOW QUALITY PROTEIN: VQ motif-containing protein 31-like OS=Cucurbita moschata OX=3662 GN=LOC111439876 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 7.26e-37
Identity = 81/141 (57.45%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------------------------------- 60
           MEKGGSQSRVVCTPLTTFIQTDTTTFRE                                
Sbjct: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFREVVQRLTGPSETHTPPSKAVGSKRSTTTSKLHE 60

Query: 61  --------------------PGEHPSYVTSPVGTPSKILSKLSTGEDEKESNKVEEEKAI 89
                                 EHPSYVTSPV TPSKILSKL  GEDEKESNKVEEEKAI
Sbjct: 61  RRHLTRPKLQIVKPCPSHFKSDEHPSYVTSPVRTPSKILSKLLMGEDEKESNKVEEEKAI 120

[Close]

BLAST of Csor.00g176650 vs. ExPASy TrEMBL
Match: A0A0A0KZ05 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G448640 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 3.07e-29
Identity = 71/145 (48.97%), Postives = 77/145 (53.10%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFREP------------------------------- 60
           MEKG SQS V C PLTTF+QTDT TFRE                                
Sbjct: 1   MEKGDSQSHVGCKPLTTFVQTDTKTFREVVQRLTGPSESHTTSSKGFGSRRPTTTSKLHE 60

Query: 61  ------------------------GEHPSYVTSPVGTPSKILSKLSTGEDEKES-NKVEE 89
                                   GEHPSY+TSP+GTPSKILSKLS G++EKE  N +EE
Sbjct: 61  RRQLITRPKLQIVKPCPSHFKATIGEHPSYITSPLGTPSKILSKLSIGDEEKEELNNMEE 120

[Close]

BLAST of Csor.00g176650 vs. ExPASy TrEMBL
Match: A0A6J1D5K7 (VQ motif-containing protein 31 OS=Momordica charantia OX=3673 GN=LOC111017822 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 2.01e-27
Identity = 68/152 (44.74%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------------------------------- 60
           MEK  +QS V C PLTTF+QTDTTTFRE                                
Sbjct: 1   MEKAANQSLVGCKPLTTFVQTDTTTFREVVQRLTGPSESHTPPSKAAGSSKRPIATSKLH 60

Query: 61  ---------------------------PGEHPSYVTSPVGTPSKILSKLSTGEDEKESNK 93
                                        EHPS  +SP+GTPSKILSKLS G+ EKE N 
Sbjct: 61  ERRHLTRPKLQIVKPAASHFFKPTSCISSEHPSCTSSPLGTPSKILSKLSIGDGEKELNA 120

[Close]

BLAST of Csor.00g176650 vs. ExPASy TrEMBL
Match: A0A5A7TPA5 (VQ motif-containing protein 31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00210 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 5.70e-27
Identity = 70/145 (48.28%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------------------------------- 60
           MEKGGSQS V C PLTTF+QTDT TFRE                                
Sbjct: 1   MEKGGSQSHVGCKPLTTFVQTDTKTFREVVQRLTGPSESHMMSSKGVGSRRPTTTSKLHE 60

Query: 61  -----------------------PGEHPSYVTSPVGTPSKILSKLSTGEDEKES-NKVEE 89
                                    EH SY+TSPVGTPSKILSKLS G++EKE  N  EE
Sbjct: 61  RRHLITRPKLQIVKPCPSYFKATTSEHLSYITSPVGTPSKILSKLSIGDEEKEELNNKEE 120

[Close]

BLAST of Csor.00g176650 vs. ExPASy TrEMBL
Match: A0A6J1EEK6 (VQ motif-containing protein 31-like OS=Cucurbita moschata OX=3662 GN=LOC111432521 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.33e-22
Identity = 64/155 (41.29%), Postives = 73/155 (47.10%), Query Frame = 0


Query: 1   MEKGGSQSRVVCTPLTTFIQTDTTTFRE-------PGE---------------------- 60
           MEK G+Q+ V C PLTTF+QTDTT FRE       P E                      
Sbjct: 8   MEKPGTQTPVKCKPLTTFVQTDTTAFREIVQRLTGPSESYTLPSSKAAGSKRPTSTSKLH 67

Query: 61  -------------------------------------HPSYVTSPVGTPSKILSKLSTGE 89
                                                HPS++TSPVGTPSKI+SKLS G 
Sbjct: 68  ERRHLTRPKLQIVKPSLSHFKPPSFITSPVGTPPRADHPSFITSPVGTPSKIMSKLSIGV 127

[Close]

BLAST of Csor.00g176650 vs. TAIR 10
Match: AT5G08480.2 (VQ motif-containing protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-15
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 11  VCTPLTTFIQTDTTTFREPGEHPSYVTSPVGTPSKILSKLSTGEDEKES---NKVEEEKA 70
           +  P  +F  T TT   + G + + +TSPVGTPS + S LS  E E +S   N  EEEKA
Sbjct: 77  IVKPPLSFKPTGTTPSSKSG-NTNLLTSPVGTPSSLFSNLSLIEGEPDSCTTNIEEEEKA 136

Query: 71  IKERGFYLHPSPRSKPGYAQPEAFIISFGISQSNSA 104
           IKER FYLHPSPRSKPGY +PE   + F ++  NS+
Sbjct: 137 IKERRFYLHPSPRSKPGYTEPELLTL-FPLTSPNSS 170

[Close]

BLAST of Csor.00g176650 vs. TAIR 10
Match: AT5G08480.1 (VQ motif-containing protein )

HSP 1 Score: 73.9 bits (180), Expect = 8.3e-14
Identity = 52/137 (37.96%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 3   KGGSQSRVVCTPLTTFIQTDTTTFRE-------PGEHPSYVTSPVGTPSK---------- 62
           KG       C P+TTF+QTDT TFRE       P E+ +   +P  T  K          
Sbjct: 4   KGSQNVATTCKPVTTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAIQKRPTSK 63

Query: 63  ------------------ILSKLSTGE-DEKESNKVEEEKAIKERGFYLHPSPRSKPGYA 104
                             +  K + GE D   +N  EEEKAIKER FYLHPSPRSKPGY 
Sbjct: 64  LHERRQCMRPKLEIVKPPLSFKPTEGEPDSCTTNIEEEEKAIKERRFYLHPSPRSKPGYT 123

[Close]

BLAST of Csor.00g176650 vs. TAIR 10
Match: AT1G28280.1 (VQ motif-containing protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 31  EHPSYVTSPVGTPSKILSKLSTGEDEKESNKVEEEKAIKERGFYLHPSPRSKPGYAQPEA 90
           + PS V SPV          S   ++  +    EEKA+KERGFYLHPSP + P   +P  
Sbjct: 168 DFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPEPRL 227

Query: 91  F----IISFGISQSNSA 104
                + S  +S S+SA
Sbjct: 228 LPLFPVTSPRVSGSSSA 244

[Close]

BLAST of Csor.00g176650 vs. TAIR 10
Match: AT1G28280.2 (VQ motif-containing protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.0e-04
Identity = 24/58 (41.38%), Postives = 31/58 (53.45%), Query Frame = 0


Query: 31  EHPSYVTSPVGTPSKILSKLSTGEDEKESNKVEEEKAIKERGFYLHPSPRSKPGYAQP 89
           + PS V SPV          S   ++  +    EEKA+KERGFYLHPSP + P   +P
Sbjct: 168 DFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPEP 225

The following BLAST results are available for this feature:

BLAST of Csor.00g176650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNP0	6.2e-14	50.00	VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1	[more]

BLAST of Csor.00g176650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603152.1	4.91e-67	100.00	VQ motif-containing protein 31, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022933110.1	1.50e-36	57.45	LOW QUALITY PROTEIN: VQ motif-containing protein 31-like [Cucurbita moschata]	[more]
XP_038880928.1	7.53e-31	50.35	VQ motif-containing protein 31 [Benincasa hispida]	[more]
XP_031740607.1	6.35e-29	48.97	VQ motif-containing protein 31-like [Cucumis sativus]	[more]
XP_022149395.1	4.14e-27	44.74	VQ motif-containing protein 31 [Momordica charantia]	[more]

BLAST of Csor.00g176650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F404	7.26e-37	57.45	LOW QUALITY PROTEIN: VQ motif-containing protein 31-like OS=Cucurbita moschata O...	[more]
A0A0A0KZ05	3.07e-29	48.97	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G448640 PE=4 SV=...	[more]
A0A6J1D5K7	2.01e-27	44.74	VQ motif-containing protein 31 OS=Momordica charantia OX=3673 GN=LOC111017822 PE...	[more]
A0A5A7TPA5	5.70e-27	48.28	VQ motif-containing protein 31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1EEK6	1.33e-22	41.29	VQ motif-containing protein 31-like OS=Cucurbita moschata OX=3662 GN=LOC11143252...	[more]

BLAST of Csor.00g176650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08480.2	4.4e-15	50.00	VQ motif-containing protein	[more]
AT5G08480.1	8.3e-14	37.96	VQ motif-containing protein	[more]
AT1G28280.1	3.5e-04	37.66	VQ motif-containing protein	[more]
AT1G28280.2	6.0e-04	41.38	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..45
IPR039829	VQ motif-containing protein 31	PANTHER	PTHR33402:SF30	BNAANNG06050D PROTEIN	coord: 36..102
IPR039611	VQ motif-containing protein 4/11/13/19/31/33	PANTHER	PTHR33402	VQ MOTIF-CONTAINING PROTEIN 11-LIKE	coord: 36..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g176650.m01	Csor.00g176650.m01	mRNA