Csor.00g176080 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g176080
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 1972008 .. 1974254 (+)
RNA-Seq ExpressionCsor.00g176080
SyntenyCsor.00g176080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTGGGAGGGTAAGACCAGTGAAGCTCCTGGACAATGAGAAGCGCATGATAAGCTAACTTGCGCCTTTCCCCTCTTATATTTCTTTATTTCCTTTTTTGCCCTTTATTCTGTTAAAATATTTCTCAACTTTCTAATTCATTTTATTTTATTCGTATATATACTTCCAAATATTTAAATAATATTTGCAAAAAATAATAAATCAATTTTCAATTACGTCAAATATGTGGGGCACTAAAACAAAAAGATGAAAGTACAGGCATTAATATGAAATAAACCAAAATGTAAGGACCCGAAAATAAATTAATGACAATCAAACAACCACGTGTCAGCTTGAAAGAATCTCCATTTCCCCAGACCTCTGTGTGCTTCACGGCGACTCGAGCTTCTTTTCCAGCGGGCCAAGCTCGGTAGATCCTTTAGACTTCAAGATTTCCGGCGGATTCCGTATACTGCTGGTTTCCACGACTCTGTAAGATCATCGTAATCTCAACCTTGAGCTGTATAATTTCAGTAATTAGGGCATTGAATTGGTTGAAATGGTTTCTGGCATGTTTCTCTCTTATGGCTGTATGAATTTGCTCCGTTTTGGACGATTTTGAAAAGATGTTGAGGAAACTTCTGCATTTCTTGTAATTGTTTGTTGAGGAAGAAAACGAAAAAGTCTGTATAATCGCGAACATAGGAAAAGAAATGATTACGACGTTTTGTCTCGTTAACTCGATGGACTGCCACTCAGCAATTAATGCTTGCACGTCAAGTTTTATGTCGTTGATGTAATTAGTAATTTGTTAAATTTTTTGAACATGTGAGCGTCCACTGTTTTGTGATAACTGATCGATTGAGATGTAAACTGATAATTGCTTCATTGGAAGCTTGAAACTTCGTAAGTGTACTAGAAAGGTGATTTATTTAGCAGGTAGTGCTAAAAACAGTGCGTTCATGAAAATTTTGCAAATCAATTTAGTACTCTGAAGAATGCCTGCTATTTACAATTACATGGATTGAGATTAGATTATCTTGAAGGTCAGCCATGGTGTGGAGTTCGATATTGATCTTTTCATATTCATGGGGGCTAAGTGTTAAGCGGTGAATATGAAGGATGAAGGCTGGAACAGGCTGAAAATGTAAGTTCTCTCCCTAGGATGAAGGCTAGAAGCTCGGAAGGGAAAGCCCACAGAGAACAATATCTGCTAGCGGTAGGATTAGGGCGATATGCCAGCAAGGAGGTTGAGCTCCGAAGGGGGGTAAACACGAGGCGGTGTGCTAGCAAGGACGCTGGGCCTCAAAGGGGGTGGATTGGGGGGTTCCATTGGAGAAGGGAACGAGTGCCAGCGAGGACGTTAGGCTCCAAAGGGGAGTGGATTGTGAGATCCCACATTGGTTGGAGAGGAGAACAAACCATTCTTTATAAGGGTGTGGAAACATCTCTCTAGCATACGCATTTTAAAAACTTTGAGGGGAAGCCCAAATAGGACAATATTTGCTAGTGGTGGGCTTAGTAAATCTCTCCAAACACACCTGGGGCAAATGCCATGAGTTATATGCAGAAATTATGAAAAATTATGAAATTCTCTAGTCAGCTGATGTGTACGTTATACGTTGGATGCTACTGTAGTATTGGATTCATGTTGGATTTAGTTATACAAATATATAACCACAAAATTTGATTATTGAACTTCTGTTATGTTTGGCATCTGTATAGTACATTTTCATTGTTTCTAACTATGCCCAATGGCCTTTGAATGCCAACCAAAATTATGTTAAATCTTTCTTTCAGATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGCATATGGTGATTGTTCCTTTGTGAACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACGACTTTTATAATGCTTATGCTAAGGTACTCGGCTTTGGCAGCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAGCGATATAGAGCTACACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGTTTAAAACACTTTTTGGTGGATATGTACATAAATTCACATCTTTTAAGACATTTGTTGATAAGTATGATCTTGTCCACCACAGGAAATATTACAAAGAAGCAGTAGCAGATCTGGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

mRNA sequence

ATGTGGTGGGAGGACCTCTGTGTGCTTCACGGCGACTCGAGCTTCTTTTCCAGCGGGCCAAGCTCGGTAGATCCTTTAGACTTCAAGATTTCCGGCGGATTCCGTATACTGCTGGTTTCCACGACTCTATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGCATATGGTACTCGGCTTTGGCAGCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAGCGATATAGAGCTACACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGAAATATTACAAAGAAGCAGTAGCAGATCTGGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

Coding sequence (CDS)

ATGTGGTGGGAGGACCTCTGTGTGCTTCACGGCGACTCGAGCTTCTTTTCCAGCGGGCCAAGCTCGGTAGATCCTTTAGACTTCAAGATTTCCGGCGGATTCCGTATACTGCTGGTTTCCACGACTCTATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGCATATGGTACTCGGCTTTGGCAGCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAGCGATATAGAGCTACACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGAAATATTACAAAGAAGCAGTAGCAGATCTGGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

Protein sequence

MWWEDLCVLHGDSSFFSSGPSSVDPLDFKISGGFRILLVSTTLWRKFVLTASLSLMIVTCIWYSALAAESAIHGFDLREKSDIELHLSFAGMISIHAYERKYYKEAVADLESRNLSVELKRRCSF
Homology
[Close]
BLAST of Csor.00g176080 vs. NCBI nr
Match: KAG6591561.1 (hypothetical protein SDJN03_13907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252 bits (643), Expect = 2.31e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MWWEDLCVLHGDSSFFSSGPSSVDPLDFKISGGFRILLVSTTLWRKFVLTASLSLMIVTC 60
           MWWEDLCVLHGDSSFFSSGPSSVDPLDFKISGGFRILLVSTTLWRKFVLTASLSLMIVTC
Sbjct: 1   MWWEDLCVLHGDSSFFSSGPSSVDPLDFKISGGFRILLVSTTLWRKFVLTASLSLMIVTC 60

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIHAYERKYYKEAVADLESRNLSVELK 120
           IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIHAYERKYYKEAVADLESRNLSVELK
Sbjct: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIHAYERKYYKEAVADLESRNLSVELK 120

Query: 121 RRCSF 125
           RRCSF
Sbjct: 121 RRCSF 125

[Close]
BLAST of Csor.00g176080 vs. NCBI nr
Match: KAG7024450.1 (hypothetical protein SDJN02_13265 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 2.20e-15
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 43  LW-RKFVLTASLSLMIVTCIWYSALAAESAIHGFDLREKSDIELHLSFAGMISIHAYER 100
           LW R  +L    +  I+  + Y ALAAESAIHGFDLREKSDIELHLSFAGMISIHAYER
Sbjct: 16  LWVRNMILLMRHTTFIMLMLRYWALAAESAIHGFDLREKSDIELHLSFAGMISIHAYER 74

[Close]
BLAST of Csor.00g176080 vs. NCBI nr
Match: KAE8651360.1 (hypothetical protein Csa_001791 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.19e-05
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           I+++ L    A   F       +  H SF   +  +  A  RKY+KEAVADLESRNLSVE
Sbjct: 425 IFFAGLVPTRANESFKTFFDGYVHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVE 484

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 485 LKTRCNF 491

[Close]
BLAST of Csor.00g176080 vs. NCBI nr
Match: XP_031739145.1 (protein FAR1-RELATED SEQUENCE 6 isoform X4 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.20e-05
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           I+++ L    A   F       +  H SF   +  +  A  RKY+KEAVADLESRNLSVE
Sbjct: 470 IFFAGLVPTRANESFKTFFDGYVHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVE 529

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 530 LKTRCNF 536

[Close]
BLAST of Csor.00g176080 vs. NCBI nr
Match: XP_031739144.1 (protein FAR1-RELATED SEQUENCE 6 isoform X3 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.20e-05
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           I+++ L    A   F       +  H SF   +  +  A  RKY+KEAVADLESRNLSVE
Sbjct: 470 IFFAGLVPTRANESFKTFFDGYVHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVE 529

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 530 LKTRCNF 536

[Close]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match: A0A1S4E5U9 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo OX=3656 GN=LOC103503840 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.89e-05
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           ++++ L    A   F       +  H SF   +  +  A  RKY+KEAVADLESRNLSVE
Sbjct: 191 VFFAGLVPICANESFKAFFDGYLHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVE 250

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 251 LKTRCNF 257

[Close]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match: A0A5D3E642 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007580 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.01e-05
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           ++++ L    A   F       +  H SF   +  +  A  RKY+KEAVADLESRNLSVE
Sbjct: 425 VFFAGLVPICANESFKAFFDGYLHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVE 484

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 485 LKTRCNF 491

[Close]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match: A0A5A7V5F9 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001600 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.09e-05
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           ++++ L    A   F       +  H SF   +  +  A  RKY+KEAVADLESRNLSV+
Sbjct: 425 VFFAGLVPICANESFKAFFDGYLHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVQ 484

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 485 LKTRCNF 491

[Close]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match: A0A6J1CK41 (Protein FAR1-RELATED SEQUENCE OS=Momordica charantia OX=3673 GN=LOC111011994 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.28e-04
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           I+++ +    A   F       +  H SF   +  +  A  RKY+KE+VADLESRNLS+E
Sbjct: 428 IFFAGMVPIHANESFKAFFDGYVHKHTSFKEFVDKYDLALHRKYHKESVADLESRNLSLE 487

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 488 LKTRCNF 494

[Close]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match: A0A6J1CK30 (Protein FAR1-RELATED SEQUENCE OS=Momordica charantia OX=3673 GN=LOC111011994 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.28e-04
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 61  IWYSALAAESAIHGFDLREKSDIELHLSFAGMISIH--AYERKYYKEAVADLESRNLSVE 120
           I+++ +    A   F       +  H SF   +  +  A  RKY+KE+VADLESRNLS+E
Sbjct: 428 IFFAGMVPIHANESFKAFFDGYVHKHTSFKEFVDKYDLALHRKYHKESVADLESRNLSLE 487

Query: 121 LKRRCSF 125
           LK RC+F
Sbjct: 488 LKTRCNF 494

The following BLAST results are available for this feature:
BLAST of Csor.00g176080 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g176080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591561.12.31e-84100.00hypothetical protein SDJN03_13907, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024450.12.20e-1571.19hypothetical protein SDJN02_13265 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8651360.11.19e-0546.27hypothetical protein Csa_001791 [Cucumis sativus][more]
XP_031739145.11.20e-0546.27protein FAR1-RELATED SEQUENCE 6 isoform X4 [Cucumis sativus][more]
XP_031739144.11.20e-0546.27protein FAR1-RELATED SEQUENCE 6 isoform X3 [Cucumis sativus][more]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E5U91.89e-0544.78Protein FAR1-RELATED SEQUENCE OS=Cucumis melo OX=3656 GN=LOC103503840 PE=3 SV=1[more]
A0A5D3E6422.01e-0544.78Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7V5F95.09e-0543.28Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A6J1CK411.28e-0441.79Protein FAR1-RELATED SEQUENCE OS=Momordica charantia OX=3673 GN=LOC111011994 PE=... [more]
A0A6J1CK301.28e-0441.79Protein FAR1-RELATED SEQUENCE OS=Momordica charantia OX=3673 GN=LOC111011994 PE=... [more]
BLAST of Csor.00g176080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g176080.m02Csor.00g176080.m02mRNA