Csor.00g174450 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g174450
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein DCL homolog, chloroplastic-like
Location	Csor_Chr09: 1125714 .. 1129725 (+)
RNA-Seq Expression	Csor.00g174450
Synteny	Csor.00g174450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTTCATAATTTTACCCCGAAAGCTTATACTGAATTTTATAGGCATTATCTGTTTGTTTTTTTAGTTGCCGAGGAACTGTGCGAGAAAACAATCAAGTAAAAATATGTTTTTCTTTACATGGTCTGCTCGAATAGAAACTTCCCTAGTCTCGAACAATATATTATATTACAGCAAGATTGGAGAAAAGAATCTTGTTAAACTTCACAAACAGACATACAGAACATGTTTAAGGGTGAGAACGTTGTTAGAAATTTCATTTTTTAATGAACCAAAATATTCCTTCCATGAAACATACATAATACCTTTTCACTCGTGATAAACTCAAGATAATGGAAGATTGTACGTTGATTAGCGGGTAGATGAAAATATAACGTGAAAAGTAAATTTGAAGCTGACAATTATACCTTCTTAATAACTGATAATCAGTTATCAGGTTTTCCTTACTTCTAATTTGAATCGACATGAATTGGTATATGTTCTGTGTTTTCATGGCAATATGATAACTACTTTCGTGTATCAACTCCTGGCTAAATCGTTTTAATAGGATCAATGCATTTGATATTTACATACGAGACCCAAAATGTTGAATCATTCCAACTACACTGACAACTACGGGAAGCTTTCAAAAACATTACAGCAGAAAGAAAAATGATATTCGAATTCGGTTTCAGTTTATTTTATGTGCCCTTTCTTATCTTTCTTTGTGGATTTGGGATTTGACTTTCTACGGCCTCTGCAAATAACTAGGGGAAGACTTGGTTAATTAATGCGCTCATCTTTCAGTTTTATTTATAGGAGGAGTAGTCAGTTGGACGTTAGGCAGTAGGGCCCTTGAGGTAATTCCGTTTTGATTGGTAGTAGGTGATGTGGAGGAAAAAGGTACTGTGTTTAGTAGTTTCATGTTGGGAGAGATTCAAGCCTCTCGCATTGCTATTTGATCCTCATTGGAATTAGCAAACTTGATTTCTGTTGGAAATTTTATCGACATTTGTTCACATAATATTTGTTAAGGTCTTCTTCCATTTGGTTACTTATTGGAGTCATGATTGTAATCTATATGCTTCTCTTTGATCTTTTCCATTTTGACTAGTATTCAATGCATAATATTATGACAATTGATATCAAAAGTAATGTCCAATGAGACCTAGTGGATGACCAGCAGCTTTTAACCGGTAAAAGCAGTGCTTTCCTCAATGTAGGGTTGGTTGCCAGTGTTCATGAGGTGGTCTCATTAGGCACGTTTCAATACAATATATAGCTCATGTTTTTGTTTTACAATCACACTTTGCTCCTATGATATTGTGTCCCTTCTCTTAAGGACTTCTATTTTTTGTACCAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTATGCTTTGGTCTGGACTAAATAGTTTAGAGTTCTTGCTATGTTTCAAATATGCAGTTTGCATGCTTTATTTTGTTAGATCATGTAGAAATAAAGCAGATAAAGAAACAAATGACATTTTGTTCGTGGATGTTTCCAAAAGCTTAAAATACAAGAAACTTATGAAATGAATTGGACAACTCTAGCCCTAGAAAATAATTGGATAATAGGTACCCGACTAATATTGTGAGATCCCACCTCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGAGTGTAGAAACCTTTCCCTAACAAACGTGTTTTAAAAATCTGGAGAGGAAACCCGGAAGAGAGTTCAAAGAGGACAATATATGTTAACCATGGGTTTGAGTTGTTACATGTATATATAGCCTTCAGATAAAAAGGATTACAAAGATGGGAAAGAAATTTGAGGTATCCCTCCTTTAACTCTCTCAATTCCAGTTCAAGAGAAACCGTGTAAAATCACATAAATAAATGGTAGCAATTGGCAGAAACCTCTGGCTTTGCACCTCAATCTTTGCCAAAATACTTGCCTGCCCAACTCCCTTCATAACGACCGGATCTAATGAACTTCCTAGCCAATGACTACATAATAAGATTTGTTGCATGCCTCCTCAAGTTGCTGCCCATGTGATCAAGTAATAGCCTCCATTTAACAACTATCTCCTTCCATATAAGGGACAGATTTGAATTGTGATTGAGGTCATTAAGCAATTTCATATATACATTACTAATACTGAAGCTTCTCTTAATAATACTTTCGCTGTATGTCATGTGGTACTGGCGTGTCCATTGAAGATCTTTGTGGGCTATCATGCTCTTCTGCGACTGTTTGTACAGAAGAAATGACACAGTTGTAAATGGAACTTATCTTCTGGTGTTGCCAAAGTAGCATACTGGACTCTATGGCTGTGTTTTTCTGTTGCTCAACTATAATCTTGAGTAAGACGTCGTAAATGGAACCGCATTTGAAATACGTTGCTGCATGATAGCACCTTGAGTAAGATGTGGTAACTCTGTGGCCCATGGCCTTGCTTTGGCAGTCCTCCACTTCGGCCCTTTCAATGGTTGTCTTATATCCTTTTGGATTCAGGATAGTTGTATCTGTTGGCCAGGCTCTTGGGTTCAATATTATATTCCCTTCACAAAAAATAAACAAAAGTTGAAAATTGCATCTGACCTAATTTTCTGTTTTCCATGACACTTTACCTTCATTGCCCAGCCATACAAAATCATCGCATGCTTTTTTCCTTTGCCCACCCACTTCTCATTTTGAGATGTTGTGCAGGCTACTTTGTTAGACCTCCAATCCAGAAGGTTTGTTCAAGGAAGAACAAAACTGGAATATGGTTGTTTCTAACGTTTAGAAGTATCAGCTTCAGTTAGTTAGTCGGTTTATTTTTTCTTTTAAATTTTTATTTGAGTATTTTGAATTAGCGAGTGATAACTTATTGAGTCAATTATATAACTTCTTAGTTTTGTTTGTATGCAGTGTTTTTGTAAATGCCGGGCATTGTTTTTTTTTTTTTTCCTTATGTTGTGTGGCTTCTTGAAAAGAATGTGGAGTGATTAATGACCCTCTCAAATGGGGACTCCCATCACACTTTTGATGTCAACAAGGCTTACATCTATTGTCTATAGAGATGTGATGCTTACCGAGTTTAAAATTGTTCTTTATTTTAAACAATTATTTAAGCTATCTTCTGTCATTGAAGGTCGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCATTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAA

mRNA sequence

ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTCGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCATTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAA

Coding sequence (CDS)

ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTCGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCATTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAA

Protein sequence

MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSSIMFVVMDNGYSRHHGISCIRSFENVEWSNGNIDNVSK

Homology

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BLAST of Csor.00g174450 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 79  DQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLE 138
           D ED+IL    P++   + I+HS +Y + +RL+ E ER +++ LL +HP  E KIGCG++
Sbjct: 99  DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGID 158

Query: 139 FIMVDRHPQFRHSRCLFVVRTDGGWIDFS 168
           +IMV  HP F  SRC+F+VR DG  +DFS
Sbjct: 159 YIMVGHHPDFESSRCMFIVRKDGEVVDFS 187

[Close]

BLAST of Csor.00g174450 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 51/147 (34.69%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 21  GLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQ 80
           G+ S   ++ R+   +    +T     L   E+   V   S           D   W D 
Sbjct: 56  GIRSDNAELLRKPVISTELETTSESEELVKEESDDEVGKKS----------GDGEGWVDW 115

Query: 81  EDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFI 140
           ED+IL D  P++   + I+HS +Y  G+RL+ + +R ++ RLL +HP  + KIG G+++I
Sbjct: 116 EDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYI 175

Query: 141 MVDRHPQFRHSRCLFVVRTDGGWIDFS 168
            V  HP F +SRCLF+VR DG  +DFS
Sbjct: 176 TVGYHPDFENSRCLFIVRKDGETVDFS 192

[Close]

BLAST of Csor.00g174450 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 80   QEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEF 139
            +E E+LSDVEPV+   ++I+H + Y DG+ ++ +D+  V++++L  HP  E K+G G++F
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 140  IMVDRHPQFRHSRCLFVVRTDGGWIDFS 168
            I VD+H  F  SRC FVV TDG   DFS
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFS 1822

[Close]

BLAST of Csor.00g174450 vs. NCBI nr
Match: KAG6591399.1 (Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 417 bits (1073), Expect = 2.61e-147
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSSIMFVVMDNGYSR 180
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSSIMFVVMDNGYSR
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSSIMFVVMDNGYSR 180

Query: 181 HHGISCIRSFENVEWSNGNIDNVSK 205
           HHGISCIRSFENVEWSNGNIDNVSK
Sbjct: 181 HHGISCIRSFENVEWSNGNIDNVSK 205

[Close]

BLAST of Csor.00g174450 vs. NCBI nr
Match: KAG7024277.1 (Protein DCL-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339 bits (869), Expect = 2.38e-116
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. NCBI nr
Match: XP_022936820.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 337 bits (865), Expect = 9.68e-116
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVS A
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSGA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. NCBI nr
Match: XP_023536078.1 (protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330 bits (847), Expect = 5.35e-113
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGL HRGLCSGVVQVTRRSC TATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTK+QRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKYQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. NCBI nr
Match: XP_022977112.1 (protein DCL homolog, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 323 bits (828), Expect = 4.20e-110
Identity = 160/167 (95.81%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGL HRGLCSGVVQVTRRSC TATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQ TK+QRWCEPDYRKWKDQEDEILSDVEPV+SLTKEI+HSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFR+SRCLFVVRTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRYSRCLFVVRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. ExPASy TrEMBL
Match: A0A6J1FET0 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443290 PE=4 SV=1)

HSP 1 Score: 337 bits (865), Expect = 4.69e-116
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVS A
Sbjct: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSGA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. ExPASy TrEMBL
Match: A0A6J1IHJ1 (protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477278 PE=4 SV=1)

HSP 1 Score: 323 bits (828), Expect = 2.03e-110
Identity = 160/167 (95.81%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLRFGL HRGLCSGVVQVTRRSC TATAASTPPDGSLTSAENTASVSSA
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           SQ TK+QRWCEPDYRKWKDQEDEILSDVEPV+SLTKEI+HSNRYVDGERLTSEDERIVVD
Sbjct: 61  SQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSNRYVDGERLTSEDERIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLEFIMVDRHPQFR+SRCLFVVRTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRYSRCLFVVRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. ExPASy TrEMBL
Match: A0A6J1C4J4 (protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007322 PE=4 SV=1)

HSP 1 Score: 291 bits (746), Expect = 6.26e-98
Identity = 141/167 (84.43%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           MAASLLLRGHPLLR GL HRGLC+G+VQVTRRSC TATAA TPPDG+LTSAEN  SV S+
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           S P K+ RW EPDYRKWKDQE+E+L+D+EP+ISLTKEI+HSNRYVDGERLTS DERIVV+
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIVVN 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. ExPASy TrEMBL
Match: A0A6J1FNQ4 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445919 PE=4 SV=1)

HSP 1 Score: 282 bits (721), Expect = 4.01e-94
Identity = 136/167 (81.44%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           M ASLLLRGHPL+R GL +RGLC+G+VQVTRRSC TA  ASTPP G L+SAENT SV SA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIVQVTRRSCCTAVPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           + P K+QRW EP YRKWK+QE+EILSD++P+ISLTKEI+HSNRYVDGERLT EDE+IVVD
Sbjct: 61  TDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. ExPASy TrEMBL
Match: A0A6J1J4G4 (protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481165 PE=4 SV=1)

HSP 1 Score: 279 bits (713), Expect = 6.61e-93
Identity = 134/167 (80.24%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSA 60
           M ASLLLRGHPL+R GL +RGLC+G++QVTRRSC TA  ASTPP G L+SAENT SV S 
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGILQVTRRSCCTAMPASTPPGGGLSSAENTTSVLST 60

Query: 61  SQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVD 120
           + P K+QRW EP YRKWK+QE+EILSD++P+ISLTKEI+HSNRYVDGERLT EDE+IVVD
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFS 167
           RLLAHHPHAEDKIGCGLE IMVDRHPQFRHSRCLFV+RTDGGWIDFS
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFS 167

[Close]

BLAST of Csor.00g174450 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-43
Identity = 97/181 (53.59%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 1   MAASLLLRGHPLLRFG-LCHR---GLCSGVVQVTRRSCFTATA----------ASTPPDG 60
           M + LLLR  PLLR G L HR   G+ +G +   RR    + A          + +P +G
Sbjct: 1   MTSLLLLRTLPLLRNGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEG 60

Query: 61  SLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVD 120
           S  +A N  S    +      R+ +PDYRKWK+ E EIL D+EP+  L KEI+HS+RY+D
Sbjct: 61  SGAAAMNVTSPVVDNS----WRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLD 120

Query: 121 GERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDF 168
           GERL  EDE+IV+++LL +HP+++DKIGCGL+FIMVDRHPQFRHSRCLFVVRTDGGWIDF
Sbjct: 121 GERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDF 177

[Close]

BLAST of Csor.00g174450 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 101.3 bits (251), Expect = 9.6e-22
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 79  DQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLE 138
           D ED+IL    P++   + I+HS +Y + +RL+ E ER +++ LL +HP  E KIGCG++
Sbjct: 99  DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGID 158

Query: 139 FIMVDRHPQFRHSRCLFVVRTDGGWIDFS 168
           +IMV  HP F  SRC+F+VR DG  +DFS
Sbjct: 159 YIMVGHHPDFESSRCMFIVRKDGEVVDFS 187

[Close]

BLAST of Csor.00g174450 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-21
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 79  DQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLE 138
           D ED+IL    P++   + I+HS +Y + +RL+ E ER +++ LL +HP  E KIGCG++
Sbjct: 99  DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGID 158

Query: 139 FIMVDRHPQFRHSRCLFVVRTDGGWIDFS 168
           +IMV  HP F  SRC+F+VR DG  +DFS
Sbjct: 159 YIMVWHHPDFESSRCMFIVRKDGEVVDFS 187

[Close]

BLAST of Csor.00g174450 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-19
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 80   QEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEF 139
            +E E+LSDVEPV+   ++I+H + Y DG+ ++ +D+  V++++L  HP  E K+G G++F
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 140  IMVDRHPQFRHSRCLFVVRTDGGWIDFS 168
            I VD+H  F  SRC FVV TDG   DFS
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFS 1822

The following BLAST results are available for this feature:

BLAST of Csor.00g174450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	1.3e-20	47.19	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	1.1e-19	34.69	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	2.1e-18	46.59	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]

BLAST of Csor.00g174450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591399.1	2.61e-147	100.00	Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7024277.1	2.38e-116	100.00	Protein DCL-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022936820.1	9.68e-116	99.40	protein DCL homolog, chloroplastic-like [Cucurbita moschata]	[more]
XP_023536078.1	5.35e-113	98.20	protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977112.1	4.20e-110	95.81	protein DCL homolog, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Csor.00g174450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FET0	4.69e-116	99.40	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1IHJ1	2.03e-110	95.81	protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A6J1C4J4	6.26e-98	84.43	protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1FNQ4	4.01e-94	81.44	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J4G4	6.61e-93	80.24	protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Csor.00g174450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46630.1	2.6e-43	53.59	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	9.6e-22	47.19	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	2.1e-21	47.19	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	1.5e-19	46.59	nuclear RNA polymerase D1B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.40		coord: 85..175 e-value: 9.8E-20 score: 72.8
None	No IPR available	PFAM	PF11523	DUF3223	coord: 96..168 e-value: 3.3E-24 score: 85.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59
None	No IPR available	PANTHER	PTHR33415:SF4	DCL PROTEIN (DUF3223)	coord: 1..168
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g174450.m01	Csor.00g174450.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding