Csor.00g173750 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g173750
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 6475696 .. 6477856 (+)
RNA-Seq Expression	Csor.00g173750
Synteny	Csor.00g173750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGAACCAGAAAACTGGACAGTTCGGAGGGTGGAAGACAGAGGGACACACAAACACAGCCGAATTTCACAGAGAAAAACTGGGAAGTCGGGCAATTTAACTTCCTTCTTCCCCCCAAAATTTTTCATTCTTCCCGCGCCATTTTTCTTCATTTCTCTTTCATTTCCGACGCTGCTCAATCGGCTTTTCAGCTCTCGGTAACTCCCTCCCTCCCTCATTCGCTACTTCTCTCTCTTCTTGCCTCCATGTTCCATTCTAGGGTTTTCTTTTTCATTTCCTCATTTTAATCCATTTTACTCTCTTGTTTCTATCATGTTTATTGATTTCGAGCCTCTGTTTTTGCTTTTGATTTATGTTTCTGCTCCTTCAGCTGATTGTTGCTTCTGATTGGTGTTTGTTTCCTGGTTTGTGAGGTCTTCCGTGTTTTTTGTTGCGGATTTCTGTAATTTGTGCTGCTATTGACTTGTTTTCATCGAAGTTGAACTTCGATTGGATGGTGTTTTTCTTACTGCTGAATTGTTATGTTGTTTTTGTGAATGTGGGAGTTGAAAGTTGATCTACTTTGTTCAGATTTTTCTTTAAGGAACTCATTGGTTTCTAGGCTAGATGCCGGGGAAATGAAATGCAAATCTACGACAAAATTATAGCTCCTTGAAGAGATAATTAGACGTTTTGAAGTACATTAGTAGTAATGCTTTCCTCGAGCGGATGGAAGGTTGATTTTCAATTTGTGCGGGTAAAAATGGTTTGAAGTCTAACAGTTGGTGGGTCTATGAGGAAGAGCCTTACTAGTTTCTAAGTTAAGGTGAAGTGGTAAGAGTTTAAACAACAAATTTTTTTCTAGAGTTTACGTTGTTTTATATGCCCTACAAAGAACGGATCTTAGCGCACCTTGCAGCTAGGTGCAAGTTCCACATTCTTAGACAGTGGAAACTAGGGTTTAAATTAAAATCAAATTTAATAATGATATAACCAAATTAGGTGATGATAGTTTCAAATTATAGGAATTTAAAATAATTTTGTGGGGTTGTTGTTGAAAGTATATTTTTCAAATCACTACGCACATTGAAGTGCGAGAGCCCTTTGGAACTTGAGTACTAACCGCAAAAATGTTCAAACGAAACATTTTATTTTTATTTTTTTTATATAGTAGCTGCTTGGGAAATGAGGTTTTACAGAACACATTTTATTAATTTCTTAGGGGAAAAAAACGTAGGCCTGATGTGGCATATACCTTAATGAGGGTACCTGTCTTTATCTGAATTGTGGAAGCCAGATGACCTTAAATGGGCCTTTCCTCTATTTTCTCTTTTCATGCTTCGTCTCACATGAGTACTCACATATTTTTTGGGCTCATTGTCCTCAGAGGGCTATTTCGCATTCTTCTTTGAAAACATTGATAGTATTTTATGAATTCATTGTTTTCTTCATATTTATAGCTAGGACATCCTACTGAACTCCTTAAATTTAAATTTGATAATATTGTGTGTACCAGTTAGGTAAAAAAAAAAAAAGAAAGAAAATTCCATTTGCATTGAATGAGGAACTTTGTTCGTTGGAACTTGGGGGTTGATTTCATATTTGGATTCTTTTCACCAGTTACAATAGTTCTTTAAGTAAAAAAGTAATTTTCTAATGGAAATGCATTGTTCATGAGGAATGATGTTTAGGTTTAGAAACTTTTGCTTGTGATCTGTCTGAGGAGCAATTGACTATGTGAATAACCTACAATCATAATGAATAAACAAAGAAAAAATACGAAAAAGATAATGCTTGTGATTGTTTCGGAGTTCCAAATTTTAGTTTTGTGTGTATTTCTCCTTTTTGCTCGTATATTTTCCATACACTTGCTGGTTCTGATTTTTCATATTTGAACTGTACCTGCAGATATTAATTTCAAGTATTAGGATCCCCTGCACTCATAGATGTTGTAGCTCCAATCCCTTTGATTGAGATGCCATAGTTTGTTTCAAGTTTATTACAGTATATCCAACTGTGATGATGGTAAAATTCTCTCTGTTCTAAACTTAATATCATGCCTGCACTTCAAATCATGAATATTAATATACGTCTTTGTTTTTAAAACGTCTTGGGAAATGTTTTTAAGTTTACTGGCTTACCTTAATGCAGATTGAAACTATTGACTTTTGGTGCTGA

mRNA sequence

ATGAAAAGAACCAGAAAACTGGACAGTTCGGAGGGTGGAAGACAGAGGGACACACAAACACAGCCGAATTTCACAGAGAAAAACTGGGAAGTCGGGCAATTTAACTTCCTTCTTCCCCCCAAAATTTTTCATTCTTCCCGCGCCATTTTTCTTCATTTCTCTTTCATTTCCGACGCTGCTCAATCGGCTTTTCAGCTCTCGATATTAATTTCAATATATCCAACTGTGATGATGATTGAAACTATTGACTTTTGGTGCTGA

Coding sequence (CDS)

ATGAAAAGAACCAGAAAACTGGACAGTTCGGAGGGTGGAAGACAGAGGGACACACAAACACAGCCGAATTTCACAGAGAAAAACTGGGAAGTCGGGCAATTTAACTTCCTTCTTCCCCCCAAAATTTTTCATTCTTCCCGCGCCATTTTTCTTCATTTCTCTTTCATTTCCGACGCTGCTCAATCGGCTTTTCAGCTCTCGATATTAATTTCAATATATCCAACTGTGATGATGATTGAAACTATTGACTTTTGGTGCTGA

Protein sequence

MKRTRKLDSSEGGRQRDTQTQPNFTEKNWEVGQFNFLLPPKIFHSSRAIFLHFSFISDAAQSAFQLSILISIYPTVMMIETIDFWC

Homology

[Close]

BLAST of Csor.00g173750 vs. NCBI nr
Match: KAG6588448.1 (hypothetical protein SDJN03_17013, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (432), Expect = 2.06e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MKRTRKLDSSEGGRQRDTQTQPNFTEKNWEVGQFNFLLPPKIFHSSRAIFLHFSFISDAA 60
          MKRTRKLDSSEGGRQRDTQTQPNFTEKNWEVGQFNFLLPPKIFHSSRAIFLHFSFISDAA
Sbjct: 1  MKRTRKLDSSEGGRQRDTQTQPNFTEKNWEVGQFNFLLPPKIFHSSRAIFLHFSFISDAA 60

Query: 61 QSAFQLSILISIYPTVMMIETIDFWC 86
          QSAFQLSILISIYPTVMMIETIDFWC
Sbjct: 61 QSAFQLSILISIYPTVMMIETIDFWC 86

The following BLAST results are available for this feature:

BLAST of Csor.00g173750 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g173750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588448.1	2.06e-53	100.00	hypothetical protein SDJN03_17013, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g173750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g173750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g173750.m01	Csor.00g173750.m01	mRNA