Csor.00g173610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g173610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein RADIALIS-like 3
Location	Csor_Chr11: 6329841 .. 6330146 (+)
RNA-Seq Expression	Csor.00g173610
Synteny	Csor.00g173610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

mRNA sequence

ATGGCTCCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

Coding sequence (CDS)

ATGGCTCCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

Protein sequence

MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL

Homology

[Close]

BLAST of Csor.00g173610 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL
Sbjct: 1  MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM 94
          +EDL  IE   VP+P Y       ++ G  D +LRL+  M
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNM 97

[Close]

BLAST of Csor.00g173610 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L
Sbjct: 1  MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAG 82
          ++D+  IE+G VP PNYR +G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Csor.00g173610 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-21
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 13 AMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCV 72
          A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSA+EV RHYE+L+ D+  IESG  
Sbjct: 10 ASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRY 69

Query: 73 PIPNYRAAGN 83
          P PNYR+ GN
Sbjct: 70 PHPNYRSNGN 79

[Close]

BLAST of Csor.00g173610 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-21
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA +S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Csor.00g173610 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 15 WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPI 74
          W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ +EV++HYEIL+ED++ IESG VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRAAG 82
          PNYR  G
Sbjct: 71 PNYRTTG 77

[Close]

BLAST of Csor.00g173610 vs. NCBI nr
Match: KAG6588434.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (527), Expect = 1.95e-67
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
           MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1   MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 101
           LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL
Sbjct: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 101

[Close]

BLAST of Csor.00g173610 vs. NCBI nr
Match: KAG7022282.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204 bits (519), Expect = 3.24e-66
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
           MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 101
           LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL
Sbjct: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 101

[Close]

BLAST of Csor.00g173610 vs. NCBI nr
Match: XP_022971553.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 181 bits (460), Expect = 2.78e-57
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKY 99
          LEDLQRIESGCVPIPNYRAAGNGDEELRL    +K +K+
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRL----LKSLKF 95

[Close]

BLAST of Csor.00g173610 vs. NCBI nr
Match: XP_022933513.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 180 bits (456), Expect = 1.13e-56
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKY 99
          LEDLQRIESGCVPIPNYRAAGNGDEELRL    +K +K+
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRL----LKSLKF 95

[Close]

BLAST of Csor.00g173610 vs. NCBI nr
Match: XP_023531644.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179 bits (454), Expect = 2.29e-56
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLKHLRPEAMWT KQNKLFEMALALYDKETPERWQNVAKA+SGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTAKQNKLFEMALALYDKETPERWQNVAKAISGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKY 99
          LEDLQRIESGCVPIPNYRAAGNGDEELRL    +K +K+
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRL----LKSLKF 95

[Close]

BLAST of Csor.00g173610 vs. ExPASy TrEMBL
Match: A0A6J1I772 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111470234 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 1.35e-57
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKY 99
          LEDLQRIESGCVPIPNYRAAGNGDEELRL    +K +K+
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRL----LKSLKF 95

[Close]

BLAST of Csor.00g173610 vs. ExPASy TrEMBL
Match: A0A6J1F4Y7 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111440915 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 5.49e-57
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKY 99
          LEDLQRIESGCVPIPNYRAAGNGDEELRL    +K +K+
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRL----LKSLKF 95

[Close]

BLAST of Csor.00g173610 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 6.14e-45
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLK  RPEA WT KQNKLFE ALALYDKE PERW N+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 90
          LEDLQRIESG VPIPNYR A NGDEELRL+
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLL 90

[Close]

BLAST of Csor.00g173610 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 2.83e-44
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLK  RPEA WT KQNKLFE ALALYDKETPERWQN+A AV GKSADEV+RHY+IL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61 LEDLQRIESGCVPIPNYRA----AGNGDEELRLV 90
          LEDL+RIESG VPIPNYRA    AGN DEELRL+
Sbjct: 61 LEDLRRIESGRVPIPNYRASAXAAGNADEELRLL 94

[Close]

BLAST of Csor.00g173610 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 3.55e-44
Identity = 73/90 (81.11%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SSLK  RPEA WT KQNKLFE ALALYDKETPERW N+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 90
          LEDL RIESG VPIPNYR   NGDEELRL+
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLL 90

[Close]

BLAST of Csor.00g173610 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL
Sbjct: 1  MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM 94
          +EDL  IE   VP+P Y       ++ G  D +LRL+  M
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNM 97

[Close]

BLAST of Csor.00g173610 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 103.6 bits (257), Expect = 9.5e-23
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA SS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L
Sbjct: 1  MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAG 82
          ++D+  IE+G VP PNYR +G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Csor.00g173610 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-22
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA +S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Csor.00g173610 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-22
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MA +S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Csor.00g173610 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-19
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 15 WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPI 74
          WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ +E +R Y++L+ D++ IE+G VP 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 75 PNYR-AAGNGDE-ELRLVMKMIKDMK 99
          P+Y+   GN +   LR   K ++ MK
Sbjct: 74 PDYKTTTGNSNRGRLRDEEKRMRSMK 99

The following BLAST results are available for this feature:

BLAST of Csor.00g173610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	1.6e-22	54.00	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	1.3e-21	58.02	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	1.7e-21	65.71	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	5.1e-21	60.26	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q58FS3	1.5e-20	62.69	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Csor.00g173610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588434.1	1.95e-67	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7022282.1	3.24e-66	99.01	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022971553.1	2.78e-57	90.91	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_022933513.1	1.13e-56	89.90	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_023531644.1	2.29e-56	88.89	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g173610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I772	1.35e-57	90.91	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111470234 PE=4 SV=1	[more]
A0A6J1F4Y7	5.49e-57	89.90	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111440915 PE=4 SV=1	[more]
A0A6J1ICR6	6.14e-45	82.22	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A6J1C2H2	2.83e-44	79.79	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]
A0A6J1GKW1	3.55e-44	81.11	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]

BLAST of Csor.00g173610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	1.1e-23	54.00	RAD-like 5	[more]
AT4G39250.1	9.5e-23	58.02	RAD-like 1	[more]
AT1G75250.1	3.6e-22	60.26	RAD-like 6	[more]
AT1G75250.2	3.6e-22	60.26	RAD-like 6	[more]
AT2G21650.1	1.7e-19	50.00	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 10..74 e-value: 3.8E-20 score: 73.4
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..61 e-value: 0.00139445 score: 32.1622
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g173610.m01	Csor.00g173610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding