Csor.00g172850 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g172850
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 5747406 .. 5750357 (+)
RNA-Seq ExpressionCsor.00g172850
SyntenyCsor.00g172850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCAGCAGGGACTCAAAAAAGAGGTTGGATGGTTTTTTGGGAGATATTGGATGAATTGCAACAGAAATCTAGAAATCCGGTGGATTTTTGCATGCAGAATGAAGATATTTCTGAGGCACGTCTTAGAAGCAATGATTGTGACAATGACCAGGTTTTTTCAGCTTCTTTGGGATTTAAAAAGGAAAGGAGATGGCAGTTATGCACTTCGATGAAGTTTTTGTTATAACAAGGCTTCATACTTTTGAAGATTGAAGGTATATTTCTGAAATTTTGAAGAGATAAGTTTGTAAAATTGTTAAACCAATCCTTTTTCAGCGGATAAGGCTTTGCTTAAAATGAAGGATTTTAAAGGGTTTGCTGATAGGGGACTTCTTGCTTCTTGGTAGAAGTTGGGGTCTAAAATACAAGAAATGGATGCTCAAAAGCATGGTAGGCTTAGTGGGTAGAAGGTTTTGGAGGATGGATCAAAATCAAGAATTTCCTCTTTCTTTATGGAATAAGGAACACGATGAAGCCATAGGCAAGGAATCTGGTGTGATCATTAATATTCTTCGGAAACAATTATTTTGTTTATGGTTAGGTATCTTACCCAACTTCACTTGGAAGTGCAAGAAAAGCACAACAAACAAGACAATAATTGACAATACCACTGTTATGTTCATATTTTTTCAATATTTACTTTTCTTGAATATTTATCGACGATATGCATAAAGTTCAAGAGATAACACGATTACAAGGAAGAAAAGACAACCACATAATGCCAACAATGCAAGAGTGTTGGTCAAATTTTGATTTGAATTTTGGCATGGGGTGTTAAAAATGTTATCAGAGTAGGATCTCTTCTAGTAAGATGTGATTTGGATAAACTAAGCAGAAGTTGGTGGGCATGTATCTAGTAAGATGTGATTTGGATAAACTAAGCAGAAGTTGGTGGGCATGTAACGCCAAGTAAAGGATGTGATGCAATTAGGTGCGCTTTCCTTTTTGATGGCTCAATTTTAGGAACTTCAAAATTAATCTTCTTTTTCTTAAGCAAAATTCTATGTTGGACGACTATGTAGGAACTTTTCTAGAAAGTATGTGAGTGAGAGTATAGCATGCTGAAATGACCCGTATTGGTCTGTAGGGATATTATTCACTCTTAGAAGCAAGATAAGTAGATAATGTGGTCATGTCGCAGGAAATGCAGGGAGTATCAGAGGCATCATATGCAAAATCTGGATTCCAAGTGTTATAAATGATATTAGAGCAGACCTCTTCTAGTAGGATGTCGCCAGGAATGTAAGGGACTGTCAGAGCCATCACATGCGAATATGGATTCCGAATCCTAATACGAATCTTGAGCTTGGGGATAGTCTTCACTTTTAAAAGCACTTCAAACAAGTAGGTAGCGTGACTTTGTCGCAGGGAATGCAAGGGAATGCTAGAGCCATGATATGCCAAATTTGGATTCCAAATCCTAGGCATAAGCGTTACAAACATTCGAATCTTGGACATTGGGCATTACAAATGATATCAAAGCGAACCTCTTCCTGTCCAAGGCAGGAGCTAGTGGGCATGTGACGTTTGAGTAAAAGAGGGATACATGAATGAACTTAGATTACATTCAAATGGGAGGGATTCAAATGGGAGGGATTCTAAAAATATGATGGTTGAGAAAAACTTAAAATAATTTAAAGTTACTACTGAGGAGCATGCCAACAAGGTGCTTAGCTTTTTGTTACTTTTCTCGGTTCTTGTTCTTTAATCTTCTGTGTTTCCTTGGTGCTCTGGTGGTGCTTTCAACAAGTTTTAGTTGGCCTTTAGTGTGGTTTTGAATGGCCTATCTCTGGCATCATGTGTGGCTTCTCAAGTTCTGGCTTTGGTCTTTAGTGTGGTTTTTAGTGGGCTGTCTCTGCGTTTGGTTTTTAGCGCGGTTCATTGTTGTGTTTGTTGGCCTTTTTGTCTTCTCAGATCTTTGGTTTTTTCATTTCTTTTTGTCCCTTGTTACTTCACTCTTAGTTCTTTTTTCACTCCCTTGTGGAATTTGTATTCATAAGCATTAGTCTCTTTTTTATTTCTTGTTATAAAAAAAAAAAAAATGTTGAGTTACTTGTAAAAGTAGAGATTATTGTGCACTTAAAATTATTATATATAATCTCCTGGAAAATTAACTTCAGCTATTTTAAAAGAGTGATTTTCCATGGAAACACATTATAAGTAAACAGGAGACAATAGCTTAAAGAAAATGGTCATCTATACATGTTTTCGCTAAATTGTTTTTCAAAAAACTAATTTTTTTTTTTTCCAAAACACTTCCAATAGCCCCTATCATGCTGAATTTGTTCTGAATATGGGAAATGGTTGAAATATATAGTGTCAATGCTAAATTACTTCTGAATTGGAGTGTTTTCGACTTCATCTAGTTCATGCTTGTTTGGCTCCTCGTGTGGTGGCTATTTTTTGGCCCCTTCTGTATTATTTTATTTTTCTCCATGAAAGCTCAGTATTTTTATTAATGAAAGTGTTAAATTAGTTTTGGCCAATTTTTTTGGATTCCAATAGGGATGATTGTAATTCATGATGTTGTACTTGATGTATGCAGGCTGGTTGCTTCAGGTTTTGGAGATCAAGTTGATAGCTGACCATTATGGTAATATATATTTATGTACTTAGGTTGTTTGCCGATGCCAATTACTTTATTATTTTCGTTATTTATTATTTGCTGAGAAGGAAATTATTCCGATGTTGGCACATGAGAAATATCAACTGCCAAAAGGAGTTGCAGAAAGGTACCCCCACCTGGCAATTATCAAAAGAGTCATTATTTCGAAGGAGATTTGAGATTTTCCTGATATTTATTTTATTTATTTAAAATATTTCTTGCATGAATATTGTGATGAGATGGTGTTTTATTTTTTTAAAATTTTATTTTGATATTTCAGAATTACCTGCTTGGAGCTTTTAA

mRNA sequence

ATGGTTCCAGCAGGGACTCAAAAAAGAGGTTGGATGGTTTTTTGGGAGATATTGGATGAATTGCAACAGAAATCTAGAAATCCGGTGGATTTTTGCATGCAGAATGAAGATATTTCTGAGGCACGTCTTAGAAGCAATGATTGTGACAATGACCAGATTGAAGGCTGGTTGCTTCAGGTTTTGGAGATCAAGTTGATAGCTGACCATTATGAATTACCTGCTTGGAGCTTTTAA

Coding sequence (CDS)

ATGGTTCCAGCAGGGACTCAAAAAAGAGGTTGGATGGTTTTTTGGGAGATATTGGATGAATTGCAACAGAAATCTAGAAATCCGGTGGATTTTTGCATGCAGAATGAAGATATTTCTGAGGCACGTCTTAGAAGCAATGATTGTGACAATGACCAGATTGAAGGCTGGTTGCTTCAGGTTTTGGAGATCAAGTTGATAGCTGACCATTATGAATTACCTGCTTGGAGCTTTTAA

Protein sequence

MVPAGTQKRGWMVFWEILDELQQKSRNPVDFCMQNEDISEARLRSNDCDNDQIEGWLLQVLEIKLIADHYELPAWSF
Homology
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BLAST of Csor.00g172850 vs. NCBI nr
Match: KAG7022208.1 (Vacuolar protein sorting-associated protein 26A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104 bits (259), Expect = 3.62e-24
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 6   TQKRGWMVFWEILDELQQKSRNPVDFCMQNEDISEARLRSNDCDNDQ 52
           TQKRGWMVFWEILDELQQKSRNPVDFCMQNEDISEARLRSNDCDNDQ
Sbjct: 109 TQKRGWMVFWEILDELQQKSRNPVDFCMQNEDISEARLRSNDCDNDQ 155

The following BLAST results are available for this feature:
BLAST of Csor.00g172850 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g172850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022208.13.62e-24100.00Vacuolar protein sorting-associated protein 26A, partial [Cucurbita argyrosperma... [more]
BLAST of Csor.00g172850 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g172850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g172850.m01Csor.00g172850.m01mRNA