Csor.00g172820 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g172820
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-directed RNA polymerase II subunit RPB7-like
Location	Csor_Chr11: 5733289 .. 5734809 (+)
RNA-Seq Expression	Csor.00g172820
Synteny	Csor.00g172820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCCACATTGTGTTGGAGAGGAACACGCAGCTGCATCCACGGCACTTCGGGCGTGGCCTCCGCGACAGCCTCGTAACCAAGCTCATGAAAGAGGTGGAGGGCACTTGCAGGTTTCTTCTTCGAACTCTTTGTTTGTTTTTGTTCAATTCTACGTAGAATTTGGTGGTTTCATGTTTAGATTTGGCACAGCGGACGCCATGGTTTTGTAGTGGCGATTACGGGCATCGAGAAAGTGGGGAAAGGGTTGATTCGTGATGGCACGGGGTTTGTGACCTTTCCTGTTAAGTATCAATGTGTTGTGTTTCGGCCTTTCAAGGGCGAAATCTTGGAAGCTTTTGTTTCTATGGTAAACAAGGTGGGTATATTCGGTTTATAATTAAAGAATACTATCTCTAAGAGTAGAGTCTTATTCGTCTAACACTTATGAGTTTGTTTTTGCTGATGAGTATGAATACGACGGCTCTAATGCGAGCCTTCTAATGTGAGTATTATTATGTAGATGGGTTTCTTTGCTGAAGCTGGACCCATTCAGATTTTTGTTTCTAATCATGTAAGGATGTTTCTTCAAATCACAAAATATCTTGGTTTTTTCTTAGTAATTTCATGAAATCTATGAATTTAATCTTAATGTGTGTGCTTGTGGTGCTTAGAGAGAGTTTCTTGTAGCTATTGAACCTTTTTCACTTTAATATTTTATGAGTCACCTTAACAATCAAATATAATGGAGACATCCTCGTTAGAATAGTTGACTTTTCCATGTAATAAGATGAAAAGGAATTTTATGTCCCGAGTCAGTCAGTGCTTGTTTTTCCATAGATTTTGTTTTTCAAGTTGGGTTGCTGTCGTTGTCCTTATAAATGGTTCTTGTTGGAGAGTCATAGCTGATCTCAATTGAGGGTCTTGCCACATTATAACATTAGGGTAGGATCGAAGGAAAGGAGAAATTGTCTCGAAAAAGGCAAAGTAAGTGTTTGAGCAAGTTAATAATATCTTTTCTTGCTCAACCTTCTTGTGTCATATTGAATTAAACGTCATTAAGGGTGTAATGTTCAATGAACTCATCTCATATCTTTTATTTCAGTTGATACCAGATGATATGGAATTTCAGTCCGGAGATATCCCAAACTATACCACTTCAGATGGATCAGTATATTTCTTAAACATCAAAAACTAATGCTCTCTTGTTAATTTAAATTTGCTTATAAATTACTTAAGTTTTCTTATAGGTTAAGATCCAAAAGGACAGCGAAGTTCGATTAAAAATAATCGGGACTCGAGTAGATGCTACTGAAATTGTATGCCAATCACAACCATGATTTCAAATTTGTTTACATATTCTTTTAAGTTTTTGGTTGAACCATACGGTCTAACGAGCTAAGAGCTTACCGAATCGAGTCGAGCTTATGCTTACTTTGTTGTGTCATTTATTAACACTATTGGGTTGGTTTGCAGTTTTGTGTTGGAACCATCAAAGATGATTTCATGGGTGTCATAAATGATCCTTCGGCGGCTTAG

mRNA sequence

ATGTTCTTCCACATTGTGTTGGAGAGGAACACGCAGCTGCATCCACGGCACTTCGGGCGTGGCCTCCGCGACAGCCTCGTAACCAAGCTCATGAAAGAGGTGGAGGGCACTTGCAGCGGACGCCATGGTTTTGTAGTGGCGATTACGGGCATCGAGAAAGTGGGGAAAGGGTTGATTCGTGATGGCACGGGGTTTGTGACCTTTCCTGTTAAGTATCAATGTGTTGTGTTTCGGCCTTTCAAGGGCGAAATCTTGGAAGCTTTTGTTTCTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCCATTCAGATTTTTGTTTCTAATCATTTGATACCAGATGATATGGAATTTCAGTCCGGAGATATCCCAAACTATACCACTTCAGATGGATCAGTTAAGATCCAAAAGGACAGCGAAGTTCGATTAAAAATAATCGGGACTCGAGTAGATGCTACTGAAATTTTTTGTGTTGGAACCATCAAAGATGATTTCATGGGTGTCATAAATGATCCTTCGGCGGCTTAG

Coding sequence (CDS)

ATGTTCTTCCACATTGTGTTGGAGAGGAACACGCAGCTGCATCCACGGCACTTCGGGCGTGGCCTCCGCGACAGCCTCGTAACCAAGCTCATGAAAGAGGTGGAGGGCACTTGCAGCGGACGCCATGGTTTTGTAGTGGCGATTACGGGCATCGAGAAAGTGGGGAAAGGGTTGATTCGTGATGGCACGGGGTTTGTGACCTTTCCTGTTAAGTATCAATGTGTTGTGTTTCGGCCTTTCAAGGGCGAAATCTTGGAAGCTTTTGTTTCTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCCATTCAGATTTTTGTTTCTAATCATTTGATACCAGATGATATGGAATTTCAGTCCGGAGATATCCCAAACTATACCACTTCAGATGGATCAGTTAAGATCCAAAAGGACAGCGAAGTTCGATTAAAAATAATCGGGACTCGAGTAGATGCTACTGAAATTTTTTGTGTTGGAACCATCAAAGATGATTTCATGGGTGTCATAAATGATCCTTCGGCGGCTTAG

Protein sequence

MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA

Homology

[Close]

BLAST of Csor.00g172820 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 2.8e-91
Identity = 158/174 (90.80%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPR+FGR LRD+LV+KLMK+VEGTCSGRHGFVVA+TGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V+MVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPS 175
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]

BLAST of Csor.00g172820 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-87
Identity = 153/176 (86.93%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPR FGR L+++LV+KLMK+VEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V++VNKMGFFAEAGP+QIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 177
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFCVGTIKDDF+GVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Csor.00g172820 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 88/172 (51.16%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MF+HI LE    LHPR+FG  L +++  KL  EVEGTC+G++GFV+A+T I+ +G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++A V+ VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVIN 172
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF +G++ DD++G+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Csor.00g172820 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 89/172 (51.74%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MF+HI LE    LHPR+FG  L +++  KL  EVEGTC+G++GFV+A+T I+ +G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++A V+ VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVIN 172
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF +G++ DD++G+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Csor.00g172820 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 88/172 (51.16%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MF+HI LE    LHPR+FG  L +++  KL  EVEGTC+G++GFV+A+T I+ +G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++A V+ VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVIN 172
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF +G++ DD++G+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Csor.00g172820 vs. NCBI nr
Match: XP_023007697.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023529971.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6588356.1 hypothetical protein SDJN03_16921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360 bits (924), Expect = 1.50e-125
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR
Sbjct: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176

[Close]

BLAST of Csor.00g172820 vs. NCBI nr
Match: XP_022933500.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata])

HSP 1 Score: 359 bits (921), Expect = 4.29e-125
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR
Sbjct: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPS+A
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSSA 176

[Close]

BLAST of Csor.00g172820 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 343 bits (880), Expect = 7.67e-119
Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPRHFGR LRD+LV+KLMK+VEGTCSGRHGFVVAITGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V+MVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Csor.00g172820 vs. NCBI nr
Match: XP_038906991.1 (DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida])

HSP 1 Score: 342 bits (878), Expect = 1.55e-118
Identity = 162/176 (92.05%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPRHFGR LRD++V+KLMK+VEGTCSGRHGFVVAITGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V+MVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Csor.00g172820 vs. NCBI nr
Match: XP_022923594.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022990163.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_022990164.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023525602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6601991.1 hypothetical protein SDJN03_07224, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342 bits (877), Expect = 2.20e-118
Identity = 162/176 (92.05%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPRHFGR LR++LVTKLMK+VEGTCSGRHGFVVAITGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V+MVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Csor.00g172820 vs. ExPASy TrEMBL
Match: A0A6J1KZF3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111500232 PE=3 SV=1)

HSP 1 Score: 360 bits (924), Expect = 7.24e-126
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR
Sbjct: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176

[Close]

BLAST of Csor.00g172820 vs. ExPASy TrEMBL
Match: A0A6J1F518 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111440900 PE=3 SV=1)

HSP 1 Score: 359 bits (921), Expect = 2.08e-125
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR
Sbjct: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPS+A
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSSA 176

[Close]

BLAST of Csor.00g172820 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 342 bits (877), Expect = 1.07e-118
Identity = 162/176 (92.05%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPRHFGR LR++LVTKLMK+VEGTCSGRHGFVVAITGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V+MVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Csor.00g172820 vs. ExPASy TrEMBL
Match: A0A6J1CIV0 (DNA-directed RNA polymerase II subunit RPB7 OS=Momordica charantia OX=3673 GN=LOC111012000 PE=3 SV=1)

HSP 1 Score: 342 bits (877), Expect = 1.07e-118
Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPRHFGR LR++LV+KLMK+VEGTCSGRHGFVVAITGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA VSMVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDP+AA
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Csor.00g172820 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 342 bits (877), Expect = 1.07e-118
Identity = 162/176 (92.05%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPRHFGR LR++LVTKLMK+VEGTCSGRHGFVVAITGIE +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V+MVNKMGFFAEAGP+QIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 176
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC+GTIKDDF+GVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Csor.00g172820 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 323.9 bits (829), Expect = 7.8e-89
Identity = 153/176 (86.93%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
           MFFHIVLERN QLHPR FGR L+++LV+KLMK+VEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA V++VNKMGFFAEAGP+QIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA 177
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFCVGTIKDDF+GVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Csor.00g172820 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-15
Identity = 49/178 (27.53%), Postives = 94/178 (52.81%), Query Frame = 0


Query: 1   MFFHIVLERNTQLHPRHF---GRGLRDSLVTKLMKEVEGTCSGRH-GFVVAITGIEKVGK 60
           MF  + L  N  +   +    G  L+ +++ +L++      + +  G+ VA+T ++K+G+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDD 120
           G IR+ TG V FPV +  + F+ FKGEI+   V  V K G F   GPI+    ++    D
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 MEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCVGTIKDDFMGVIND 173
            ++  G+ P +     S +IQ ++ VR+ +IG +      E   + +++ D++G +++
Sbjct: 121 YKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSE 177

[Close]

BLAST of Csor.00g172820 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 43  GFVVAITGIEKVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAG 102
           G+++  T +E +G+G I++ TG + FPV +  + F+ FKGEI+   V  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PIQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCVG 162
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 163 TIKDDFMG 169
           +I  D +G
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of Csor.00g172820 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05
Identity = 27/87 (31.03%), Postives = 41/87 (47.13%), Query Frame = 0


Query: 1  MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
          MF+   LE + ++ P      L D++ + L            G  V+I  I+ V  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of Csor.00g172820 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05
Identity = 27/87 (31.03%), Postives = 41/87 (47.13%), Query Frame = 0


Query: 1  MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR 60
          MF+   LE + ++ P      L D++ + L            G  V+I  I+ V  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of Csor.00g172820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	2.8e-91	90.80	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	1.1e-87	86.93	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	1.1e-50	51.16	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	1.1e-50	51.74	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	1.1e-50	51.16	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of Csor.00g172820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007697.1	1.50e-125	100.00	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_02352997...	[more]
XP_022933500.1	4.29e-125	99.43	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata]	[more]
XP_038906688.1	7.67e-119	92.61	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]
XP_038906991.1	1.55e-118	92.05	DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida]	[more]
XP_022923594.1	2.20e-118	92.05	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923...	[more]

BLAST of Csor.00g172820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZF3	7.24e-126	100.00	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F518	2.08e-125	99.43	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JSG6	1.07e-118	92.05	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CIV0	1.07e-118	92.61	DNA-directed RNA polymerase II subunit RPB7 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1E6V3	1.07e-118	92.05	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Csor.00g172820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	7.8e-89	86.93	DNA-directed RNA polymerase II	[more]
AT4G14660.1	7.4e-15	27.53	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	1.2e-12	31.25	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	3.1e-05	31.03	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	3.1e-05	31.03	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..80 e-value: 1.4E-26 score: 94.6
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 9..64 e-value: 8.2E-12 score: 45.2
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..156 e-value: 9.9E-15 score: 54.7
None	No IPR available	GENE3D	2.40.50.140		coord: 81..171 e-value: 5.1E-35 score: 121.4
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..176
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 81..168 e-value: 1.9395E-42 score: 135.081
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 2..81 e-value: 2.12864E-37 score: 121.905
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..176
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 79..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g172820.m01	Csor.00g172820.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding