Csor.00g172430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g172430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein RTE1-HOMOLOG
Location	Csor_Chr16: 3385094 .. 3386533 (-)
RNA-Seq Expression	Csor.00g172430
Synteny	Csor.00g172430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAAGCAACGATCCTGAGAATCAGATGATGATCGAAGGAAATATCGCTCAGAATATGAAGATTGATCCGGAGCGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCGTTCCTTTCATTGGTCACATCGGCATTGGCAGAGAGGATGGAGTAATCTTAGACTTCGCAGGTCCCAATTTTGTGTGTGTCGACAACTTCACATTTGGCGCAGTCGCTCGGTATCTTCAAATCAGCAGCGACAAGGTACCAAAATCCATGCATGATACTGTGATCGGAACCTCTTTCCCTACTTTTTTGGCTGATTTTGTTGCAATCGATATGCAGTGTTGTTGCATTGTCACTCGCAGAAGTGAAGAAGATGAATTCAGAGAAGGAGAAATTTCAACATGGGATGATGCATTGCGGAGGAGCACTCAAGAGTTCCAGCACCGATCCTACAATCTCTTGACTTGCAATTGTCATTCCTTTGTGGCTAATAATCTGAACAGACTTGGGTTTCGCACAGGTGGATGGAATGTGGTGAACCTTGCTGCTCTGATCTTCCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTAATCAGGACGTTGTTACCATTTGTTGTGGTATTCAGCATTGGACTCGCACTGGGCGGTACTACTTTCCTTACCTTCTTGGCATTCTTCAATGTCTTCCTGGTTGGTTGGTTCATTCTTGGTACTTATGTCTTCAAAAACTTGGTTCAGTTGTAATGTTTCAACATCTTTTACATTCTGTATGCTTTCCTTCGTTGTATTTGTACAAATCCTTGTTATTTTGTTGCGCACTTTAATAGAGTTCATGAATTCTAGTAAGTTCGGTTGAGGATTATTAAGAACACTGTCTCCATTGGTATGAGGCTTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTTATGCTCAAAGTGGACAATATTATACCACTATGGAGGGTCGTGGTTACTAACATGGTATCAGAGTCATACCCTTAATTTAGTCATGACAATAGAATCCTCAAGTGTCGAACAAAGGTTGTACTTTGTTTGAGGGCTCCAGAGAAAGTTTCGAGGCTCGATTAAGAGGAGGTTATTCGATAGCTTTAGAGGAGGAGACTCAAATGACGAACAAAGTTGTATTGTTTGCGGATAAATAACTTTTTTCTGGGCATTCAAGAAATCACAATGTTACACCAGGAAACTCCTCCCAGCATGAAGACAAATAGATAAAAGCTTGTGCTTCCCTCTAAAATGGAAGGGAAGGTAGCTTGAGAGATTCAACTTAGGACCCTAGAATGAACAAATCACCCCACACAAAACAAATACTTTTTTCTTTTCTAACAAACACTATGGTATGGAAGCTGCTAAACCATTTGAAACTAATTTCCTTTGGCTGTACAGGTATCCAGGATGAAAACTGA

mRNA sequence

ATGGAATCAAGCAACGATCCTGAGAATCAGATGATGATCGAAGGAAATATCGCTCAGAATATGAAGATTGATCCGGAGCGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCGTTCCTTTCATTGGTCACATCGGCATTGGCAGAGAGGATGGAGTAATCTTAGACTTCGCAGGTCCCAATTTTGTGTGTGTCGACAACTTCACATTTGGCGCAGTCGCTCGGTATCTTCAAATCAGCAGCGACAAGTGTTGTTGCATTGTCACTCGCAGAAGTGAAGAAGATGAATTCAGAGAAGGAGAAATTTCAACATGGGATGATGCATTGCGGAGGAGCACTCAAGAGTTCCAGCACCGATCCTACAATCTCTTGACTTGCAATTGTCATTCCTTTGTGGCTAATAATCTGAACAGACTTGGGTTTCGCACAGGTGGATGGAATGTGGTGAACCTTGCTGCTCTGATCTTCCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTAATCAGGACGTTGTTACCATTTGTTGTGGTATTCAGCATTGGACTCGCACTGGGCGGTATCCAGGATGAAAACTGA

Coding sequence (CDS)

ATGGAATCAAGCAACGATCCTGAGAATCAGATGATGATCGAAGGAAATATCGCTCAGAATATGAAGATTGATCCGGAGCGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCGTTCCTTTCATTGGTCACATCGGCATTGGCAGAGAGGATGGAGTAATCTTAGACTTCGCAGGTCCCAATTTTGTGTGTGTCGACAACTTCACATTTGGCGCAGTCGCTCGGTATCTTCAAATCAGCAGCGACAAGTGTTGTTGCATTGTCACTCGCAGAAGTGAAGAAGATGAATTCAGAGAAGGAGAAATTTCAACATGGGATGATGCATTGCGGAGGAGCACTCAAGAGTTCCAGCACCGATCCTACAATCTCTTGACTTGCAATTGTCATTCCTTTGTGGCTAATAATCTGAACAGACTTGGGTTTCGCACAGGTGGATGGAATGTGGTGAACCTTGCTGCTCTGATCTTCCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTAATCAGGACGTTGTTACCATTTGTTGTGGTATTCAGCATTGGACTCGCACTGGGCGGTATCCAGGATGAAAACTGA

Protein sequence

MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLPFVVVFSIGLALGGIQDEN

Homology

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BLAST of Csor.00g172430 vs. ExPASy Swiss-Prot
Match: Q9SD42 (Protein RTE1-HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=RTH PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-70
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 0


Query: 2   ESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVI 61
           E++ D E++MMI   ++  MKIDP+R RFPCCIVWTPLP ISWLVPFIGH+GI REDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 62

Query: 62  LDFAGPNFVCVDNFTFGAVARYLQI--------SSDKCCCIVTRRSEEDEFREGEISTWD 121
           LDFAGPNFVCVDNF FGAV+RY+QI        SS        RR E++E    +  TWD
Sbjct: 63  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 122

Query: 122 DALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGA 181
           DALR+STQE+QH SYN+LTCNCHSFVANNLNRL  ++GGWNVVNLA L+  KGRWV+K A
Sbjct: 123 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 182

Query: 182 VIRTLLPFVVVFSIGLALGG 194
           ++++LLP ++V++IG+ LGG
Sbjct: 183 IVKSLLPPLIVYTIGILLGG 200

[Close]

BLAST of Csor.00g172430 vs. ExPASy Swiss-Prot
Match: F4ITL6 (Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana OX=3702 GN=RTE1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-51
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 0


Query: 22  KIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVA 81
           +ID ++++FPCCIVWTPLPV+SWL PFIGHIG+ REDGVILDFAG NF+ VD+F FG  A
Sbjct: 43  EIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIGLCREDGVILDFAGSNFINVDDFAFGPPA 102

Query: 82  RYLQISSDKCCCIVTRRSEEDEF-----REGEISTWDDALRRSTQEFQHRSYNLLTCNCH 141
           RYLQ+   KCC          ++       G   TWD+AL  ST+ F+H++YN+ TCNCH
Sbjct: 103 RYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGTARTWDNALSSSTRSFEHKTYNIFTCNCH 162

Query: 142 SFVANNLNRLGFRTGG---WNVVNLAALIFLKGRWVSKGAVIRTLLPFVVVFSIGLALGG 194
           SFVAN LNRL +  GG   WN+VN+A L+ +KG+W++  +V+R+ LP  VV S+G+ L G
Sbjct: 163 SFVANCLNRLCY--GGSMEWNMVNVAILLMIKGKWINGSSVVRSFLPCAVVTSLGVVLVG 220

[Close]

BLAST of Csor.00g172430 vs. ExPASy Swiss-Prot
Match: Q9H0R3 (Transmembrane protein 222 OS=Homo sapiens OX=9606 GN=TMEM222 PE=1 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-31
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 0


Query: 23  IDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVAR 82
           +D ER+RFP C+VWTP+PV++W  P IGH+GI    GVI DFAGP FV  DN  FG  A+
Sbjct: 45  MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPAK 104

Query: 83  YLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRSTQEFQHRSYNLLTCNCHSFVANN 142
           Y ++   +             +  G  + WD A+  +++E++HR +NL   NCHS VA  
Sbjct: 105 YWKLDPAQV------------YASGP-NAWDTAVHDASEEYKHRMHNLCCDNCHSHVALA 164

Query: 143 LNRLGFRTG-GWNVVNLAALIFLKGRWVSKGAVIRTLLPFVVVFSIGLAL 192
           LN + +     WN+V L     L G++VS GA ++T LPF+++  I L +
Sbjct: 165 LNLMRYNNSTNWNMVTLCFFCLLYGKYVSVGAFVKTWLPFILLLGIILTV 201

[Close]

BLAST of Csor.00g172430 vs. ExPASy Swiss-Prot
Match: Q8BVA2 (Transmembrane protein 222 OS=Mus musculus OX=10090 GN=Tmem222 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30
Identity = 68/170 (40.00%), Postives = 100/170 (58.82%), Query Frame = 0


Query: 23  IDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVAR 82
           +D ER+RFP C+VWTP+PV++W  P IGH+GI    GVI DFAGP FV  DN  FG  A+
Sbjct: 45  MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSAGVIRDFAGPYFVSEDNMAFGKPAK 104

Query: 83  YLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRSTQEFQHRSYNLLTCNCHSFVANN 142
           + ++   +             +  G  + WD A+  +++E++HR +NL   NCHS VA  
Sbjct: 105 FWKLDPGQV------------YASGP-NAWDTAVHDASEEYKHRMHNLCCDNCHSHVALA 164

Query: 143 LNRLGFRTG-GWNVVNLAALIFLKGRWVSKGAVIRTLLPFVVVFSIGLAL 192
           LN + +     WN+V L     + G++VS GA ++T LPFV++  I L +
Sbjct: 165 LNLMRYNNSTNWNMVTLCCFCLIYGKYVSVGAFVKTWLPFVLLLGIILTV 201

[Close]

BLAST of Csor.00g172430 vs. NCBI nr
Match: KAG6577236.1 (Protein RTE1-HOMOLOG, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 413 bits (1062), Expect = 7.24e-146
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120
           ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST
Sbjct: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120

Query: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180
           QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP
Sbjct: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180

Query: 181 FVVVFSIGLALGGIQDEN 198
           FVVVFSIGLALGGIQDEN
Sbjct: 181 FVVVFSIGLALGGIQDEN 198

[Close]

BLAST of Csor.00g172430 vs. NCBI nr
Match: XP_022929506.1 (protein RTE1-HOMOLOG isoform X1 [Cucurbita moschata])

HSP 1 Score: 401 bits (1030), Expect = 1.61e-140
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120
           ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFR+GEISTWDDALRRST
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFRDGEISTWDDALRRST 124

Query: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180
           QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP
Sbjct: 125 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 184

Query: 181 FVVVFSIGLALGG 193
           FVVVFSIGLALGG
Sbjct: 185 FVVVFSIGLALGG 197

[Close]

BLAST of Csor.00g172430 vs. NCBI nr
Match: XP_022984318.1 (protein RTE1-HOMOLOG [Cucurbita maxima] >XP_022984319.1 protein RTE1-HOMOLOG [Cucurbita maxima])

HSP 1 Score: 399 bits (1026), Expect = 6.55e-140
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120
           ILDFAGPNFVCVDNFTFGAV RYLQI+SDKCCCIVTRRSEEDEFREGEISTWDDALRRST
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVVRYLQINSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 124

Query: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180
           QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP
Sbjct: 125 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 184

Query: 181 FVVVFSIGLALGG 193
           FVVVFSIGLALGG
Sbjct: 185 FVVVFSIGLALGG 197

[Close]

BLAST of Csor.00g172430 vs. NCBI nr
Match: XP_023552337.1 (protein RTE1-HOMOLOG-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399 bits (1025), Expect = 9.31e-140
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120
           ILDFAGPNFVCVDNFTFGAVARYLQI+SDKCCCIVT RSEEDEFREGEISTWDDALRRST
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVARYLQINSDKCCCIVTHRSEEDEFREGEISTWDDALRRST 124

Query: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180
           QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP
Sbjct: 125 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 184

Query: 181 FVVVFSIGLALGG 193
           FVVVFSIGLALGG
Sbjct: 185 FVVVFSIGLALGG 197

[Close]

BLAST of Csor.00g172430 vs. NCBI nr
Match: XP_022929508.1 (protein RTE1-HOMOLOG isoform X2 [Cucurbita moschata])

HSP 1 Score: 394 bits (1011), Expect = 1.69e-137
Identity = 192/201 (95.52%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDK--------CCCIVTRRSEEDEFREGEISTW 120
           ILDFAGPNFVCVDNFTFGAVARYLQISSDK        CCCIVTRRSEEDEFR+GEISTW
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVARYLQISSDKVPKSMHDTCCCIVTRRSEEDEFRDGEISTW 124

Query: 121 DDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKG 180
           DDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKG
Sbjct: 125 DDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKG 184

Query: 181 AVIRTLLPFVVVFSIGLALGG 193
           AVIRTLLPFVVVFSIGLALGG
Sbjct: 185 AVIRTLLPFVVVFSIGLALGG 205

[Close]

BLAST of Csor.00g172430 vs. ExPASy TrEMBL
Match: A0A6J1ENB6 (protein RTE1-HOMOLOG isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436054 PE=4 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 7.79e-141
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120
           ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFR+GEISTWDDALRRST
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFRDGEISTWDDALRRST 124

Query: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180
           QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP
Sbjct: 125 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 184

Query: 181 FVVVFSIGLALGG 193
           FVVVFSIGLALGG
Sbjct: 185 FVVVFSIGLALGG 197

[Close]

BLAST of Csor.00g172430 vs. ExPASy TrEMBL
Match: A0A6J1JA62 (protein RTE1-HOMOLOG OS=Cucurbita maxima OX=3661 GN=LOC111482655 PE=4 SV=1)

HSP 1 Score: 399 bits (1026), Expect = 3.17e-140
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 120
           ILDFAGPNFVCVDNFTFGAV RYLQI+SDKCCCIVTRRSEEDEFREGEISTWDDALRRST
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVVRYLQINSDKCCCIVTRRSEEDEFREGEISTWDDALRRST 124

Query: 121 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 180
           QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP
Sbjct: 125 QEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLP 184

Query: 181 FVVVFSIGLALGG 193
           FVVVFSIGLALGG
Sbjct: 185 FVVVFSIGLALGG 197

[Close]

BLAST of Csor.00g172430 vs. ExPASy TrEMBL
Match: A0A6J1ESB6 (protein RTE1-HOMOLOG isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436054 PE=4 SV=1)

HSP 1 Score: 394 bits (1011), Expect = 8.17e-138
Identity = 192/201 (95.52%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDK--------CCCIVTRRSEEDEFREGEISTW 120
           ILDFAGPNFVCVDNFTFGAVARYLQISSDK        CCCIVTRRSEEDEFR+GEISTW
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVARYLQISSDKVPKSMHDTCCCIVTRRSEEDEFRDGEISTW 124

Query: 121 DDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKG 180
           DDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKG
Sbjct: 125 DDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKG 184

Query: 181 AVIRTLLPFVVVFSIGLALGG 193
           AVIRTLLPFVVVFSIGLALGG
Sbjct: 185 AVIRTLLPFVVVFSIGLALGG 205

[Close]

BLAST of Csor.00g172430 vs. ExPASy TrEMBL
Match: A0A6J1C4G0 (protein RTE1-HOMOLOG OS=Momordica charantia OX=3673 GN=LOC111008280 PE=4 SV=1)

HSP 1 Score: 359 bits (922), Expect = 2.10e-124
Identity = 176/196 (89.80%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MES+NDPENQ+M+EGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 1   MESNNDPENQLMVEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEED--EFREG-EISTWDDALR 120
           ILDFAGPNFVCVDNFTFGAVARYLQI+ +K CCI T RSE++  EF  G EISTWDDALR
Sbjct: 61  ILDFAGPNFVCVDNFTFGAVARYLQINGEK-CCISTHRSEDEMREFDHGREISTWDDALR 120

Query: 121 RSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRT 180
           RSTQEFQHRSYNLLTCNCHSFVANNLNRLGFR+GGWNVVNLA LIFLKGRWVS GAVIRT
Sbjct: 121 RSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRSGGWNVVNLATLIFLKGRWVSTGAVIRT 180

Query: 181 LLPFVVVFSIGLALGG 193
            LPFVVVFSIGLALGG
Sbjct: 181 FLPFVVVFSIGLALGG 195

[Close]

BLAST of Csor.00g172430 vs. ExPASy TrEMBL
Match: A0A0A0KXZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G044470 PE=4 SV=1)

HSP 1 Score: 358 bits (920), Expect = 4.87e-124
Identity = 179/196 (91.33%), Postives = 182/196 (92.86%), Query Frame = 0


Query: 1   MESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 60
           MESS DPENQ+MIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV
Sbjct: 5   MESSKDPENQLMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGV 64

Query: 61  ILDFAGPNFVCVDNFTFGAVARYLQISSDKCCCIVTRRSEEDEFRE----GEISTWDDAL 120
           ILDFAGPNFVCVDNFTFGAVARYLQI+ DK CCI   RSEE E RE     EISTWDDAL
Sbjct: 65  ILDFAGPNFVCVDNFTFGAVARYLQINRDK-CCISAHRSEE-ELREVDHSREISTWDDAL 124

Query: 121 RRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIR 180
           RRSTQEFQHR+YNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIR
Sbjct: 125 RRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIR 184

Query: 181 TLLPFVVVFSIGLALG 192
           T LPFVVVFSIGLALG
Sbjct: 185 TFLPFVVVFSIGLALG 198

[Close]

BLAST of Csor.00g172430 vs. TAIR 10
Match: AT3G51040.1 (RTE1-homolog )

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-71
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 0


Query: 2   ESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVI 61
           E++ D E++MMI   ++  MKIDP+R RFPCCIVWTPLP ISWLVPFIGH+GI REDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 62

Query: 62  LDFAGPNFVCVDNFTFGAVARYLQI--------SSDKCCCIVTRRSEEDEFREGEISTWD 121
           LDFAGPNFVCVDNF FGAV+RY+QI        SS        RR E++E    +  TWD
Sbjct: 63  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 122

Query: 122 DALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGA 181
           DALR+STQE+QH SYN+LTCNCHSFVANNLNRL  ++GGWNVVNLA L+  KGRWV+K A
Sbjct: 123 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 182

Query: 182 VIRTLLPFVVVFSIGLALGG 194
           ++++LLP ++V++IG+ LGG
Sbjct: 183 IVKSLLPPLIVYTIGILLGG 200

[Close]

BLAST of Csor.00g172430 vs. TAIR 10
Match: AT3G51040.2 (RTE1-homolog )

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-71
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 0


Query: 2   ESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVI 61
           E++ D E++MMI   ++  MKIDP+R RFPCCIVWTPLP ISWLVPFIGH+GI REDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 62

Query: 62  LDFAGPNFVCVDNFTFGAVARYLQI--------SSDKCCCIVTRRSEEDEFREGEISTWD 121
           LDFAGPNFVCVDNF FGAV+RY+QI        SS        RR E++E    +  TWD
Sbjct: 63  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 122

Query: 122 DALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGA 181
           DALR+STQE+QH SYN+LTCNCHSFVANNLNRL  ++GGWNVVNLA L+  KGRWV+K A
Sbjct: 123 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 182

Query: 182 VIRTLLPFVVVFSIGLALGG 194
           ++++LLP ++V++IG+ LGG
Sbjct: 183 IVKSLLPPLIVYTIGILLGG 200

[Close]

BLAST of Csor.00g172430 vs. TAIR 10
Match: AT3G51040.3 (RTE1-homolog )

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-71
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 0


Query: 2   ESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVI 61
           E++ D E++MMI   ++  MKIDP+R RFPCCIVWTPLP ISWLVPFIGH+GI REDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 62

Query: 62  LDFAGPNFVCVDNFTFGAVARYLQI--------SSDKCCCIVTRRSEEDEFREGEISTWD 121
           LDFAGPNFVCVDNF FGAV+RY+QI        SS        RR E++E    +  TWD
Sbjct: 63  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 122

Query: 122 DALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGA 181
           DALR+STQE+QH SYN+LTCNCHSFVANNLNRL  ++GGWNVVNLA L+  KGRWV+K A
Sbjct: 123 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 182

Query: 182 VIRTLLPFVVVFSIGLALGG 194
           ++++LLP ++V++IG+ LGG
Sbjct: 183 IVKSLLPPLIVYTIGILLGG 200

[Close]

BLAST of Csor.00g172430 vs. TAIR 10
Match: AT2G26070.1 (Protein of unknown function (DUF778) )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 0


Query: 22  KIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVA 81
           +ID ++++FPCCIVWTPLPV+SWL PFIGHIG+ REDGVILDFAG NF+ VD+F FG  A
Sbjct: 43  EIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIGLCREDGVILDFAGSNFINVDDFAFGPPA 102

Query: 82  RYLQISSDKCCCIVTRRSEEDEF-----REGEISTWDDALRRSTQEFQHRSYNLLTCNCH 141
           RYLQ+   KCC          ++       G   TWD+AL  ST+ F+H++YN+ TCNCH
Sbjct: 103 RYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGTARTWDNALSSSTRSFEHKTYNIFTCNCH 162

Query: 142 SFVANNLNRLGFRTGG---WNVVNLAALIFLKGRWVSKGAVIRTLLPFVVVFSIGLALGG 194
           SFVAN LNRL +  GG   WN+VN+A L+ +KG+W++  +V+R+ LP  VV S+G+ L G
Sbjct: 163 SFVANCLNRLCY--GGSMEWNMVNVAILLMIKGKWINGSSVVRSFLPCAVVTSLGVVLVG 220

The following BLAST results are available for this feature:

BLAST of Csor.00g172430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD42	2.3e-70	64.00	Protein RTE1-HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=RTH PE=2 SV=1	[more]
F4ITL6	1.9e-51	53.89	Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
Q9H0R3	4.8e-31	40.59	Transmembrane protein 222 OS=Homo sapiens OX=9606 GN=TMEM222 PE=1 SV=2	[more]
Q8BVA2	1.1e-30	40.00	Transmembrane protein 222 OS=Mus musculus OX=10090 GN=Tmem222 PE=1 SV=1	[more]

BLAST of Csor.00g172430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577236.1	7.24e-146	100.00	Protein RTE1-HOMOLOG, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022929506.1	1.61e-140	99.48	protein RTE1-HOMOLOG isoform X1 [Cucurbita moschata]	[more]
XP_022984318.1	6.55e-140	98.96	protein RTE1-HOMOLOG [Cucurbita maxima] >XP_022984319.1 protein RTE1-HOMOLOG [Cu...	[more]
XP_023552337.1	9.31e-140	98.96	protein RTE1-HOMOLOG-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022929508.1	1.69e-137	95.52	protein RTE1-HOMOLOG isoform X2 [Cucurbita moschata]	[more]

BLAST of Csor.00g172430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENB6	7.79e-141	99.48	protein RTE1-HOMOLOG isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436054 PE...	[more]
A0A6J1JA62	3.17e-140	98.96	protein RTE1-HOMOLOG OS=Cucurbita maxima OX=3661 GN=LOC111482655 PE=4 SV=1	[more]
A0A6J1ESB6	8.17e-138	95.52	protein RTE1-HOMOLOG isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436054 PE...	[more]
A0A6J1C4G0	2.10e-124	89.80	protein RTE1-HOMOLOG OS=Momordica charantia OX=3673 GN=LOC111008280 PE=4 SV=1	[more]
A0A0A0KXZ7	4.87e-124	91.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G044470 PE=4 SV=1	[more]

BLAST of Csor.00g172430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51040.1	1.7e-71	64.00	RTE1-homolog	[more]
AT3G51040.2	1.7e-71	64.00	RTE1-homolog	[more]
AT3G51040.3	1.7e-71	64.00	RTE1-homolog	[more]
AT2G26070.1	1.3e-52	53.89	Protein of unknown function (DUF778)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 194..198
None	No IPR available	PANTHER	PTHR20921:SF5	SUBFAMILY NOT NAMED	coord: 1..194
IPR008496	TMEM222/RTE1	PFAM	PF05608	DUF778	coord: 39..90 e-value: 8.2E-21 score: 75.2 coord: 106..168 e-value: 5.4E-19 score: 69.3
IPR008496	TMEM222/RTE1	PANTHER	PTHR20921	UNCHARACTERIZED	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g172430.m01	Csor.00g172430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane