Csor.00g172400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g172400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUbiquitin-conjugating enzyme family protein
LocationCsor_Chr16: 3357373 .. 3360187 (-)
RNA-Seq ExpressionCsor.00g172400
SyntenyCsor.00g172400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGCTCCTCCGACTCCGCCCGCAAGGTTCCTTCTTTTTCTCTTCTTTCCCCCCATCTTCATCATCTTCATCATCATCGTCATCATCCTCTTCGCCTTCTTCGATTCATCAATCCACTGCCTTCTAATTCATCTCCCCTGTCTCTTCCTCTTCTCCCTTTCCGTTTCTGATTTGATTCATTTTCCTTCTTTGATTTCCAGGCTCTGAGTAAGATTGCCTGCAATCGCCTCCAGAAGGAGCTCGTTGAGTGGCAGGTCAACCCTCCCGCTGGTTTTAAACACAGGGTCACCGATAATCTTCAGAGGTATTTCTTCTTCCCCTTTCCTCGTAGGGTTTTTTTGAACAAAATTCCGTTTACTCGCTTTCTAGGTCGTCCTTCATACTCACCGTCGTAGAAAAACAAGGCTACAATTCTATTTAATTCCGTGCAATTAGTGGTGGTGGGGTCTTTGTTTAGGTCTGATTGCGTCGTCCTGGGCTTCATTTTTGTATCACAACGAAGTTTTCTTGTTCCTGTTATTTCCTGTAGTCGGTTCTGTAAGGAATTTTTGTTGTTGTTGTTGCTTTTAGTAGGAATTTCACGTTCATTTCTGGGTTTTTTTGTTGGAAGGTGGGTGATTGAAGTCAACGGTGCCCCTGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGATTTCCCCGAACATTATCCAATGGAAGCCCCACAGGTCTAAACATAATCATCCAACTCTGAGATCATTTCCATTCCATAACCCTATGGCATCTTTATTTAGATATCGATTGTATTATGATTGTCTTTGATTTTGGCCTGCCCGTTTCATTACAGGTTATATTTCTGCATCCAGCTCCCCTGCATCCTCATATCTATAGCAACGGTCACATTTGTCTAGGTTGGTATATCTATTGTTTTCTCTTGGTGCCTCTACTGGTGGCATTTCTGCAGGATTATTGAGTTCTTATTATATTCCTTTCTTCTCTCTGTTGTTTGTGTTCATACTTTTGTCTCGTTTCCAATCTACACTGTTTTGAGTTCAATGCTGTCTAAGGAGTTTTGCTTAGAATATTTGTGTCAGGAGAGTAGTCAGAGTTCATAAGGTCGTACCAGTAATAGTAATTGAGTTCAATTGAATTTCACCCAAGTAGTAGATATCTCAATGGGGGGTGGGGGGAGGTCGTTTCTAGACTTTCCCATTATATAGTGGCACGTTGCCTGCAGCCTTATCACTGACTTGTCATGGGGAACCTGAATGATTTGATGTTACAGGAAGGTTTTGGTATACATCCTGTCCTTTTAGTTCAACAGTAAGAACATCACTTTTTGTTGATGCGACAACAAGTGGCTTGCATCCATTCACTTACAACTTTTCAATATATAAACTAGTTTACAGAGAAAGTACCGCTTGATTTGGAATTTGTTTCTTCTTTTTTTTTTGGTAATAAGAAGTTTGTATAGATGAGAAGACCCTCTATGCTGATAATTTATTGTAGGATCGGTGTTTATTGTGTCATGTTGTTTACTAGGATGTTCATTGGTCTGGTTTGTTTTGGAATCTTTGAACCAGTTATGTACATACATTCACACACACACACACACACGAAGAATAAGAACAGAACCATGCTGCTCAAACAATAAGTACTAACGTTAAAAAAATCCCAAACATGTTAGATTGTAATTGTTTTGTAATGTTTGTCTTTTCAAACTTGACTTTAGACTTTACAAGAAATCATTAATTATGTTATGTTTTGAGTTATTTAGGAGTTAATATATGTAATAGTTCAAGTTCACTGTTAGCAGATATTGTTCTCTTTGAGCTTTTCCTTCTGGACTTCCCCTCAAGGTTTTTAAAACGCGTCTGCAAAGGAGAAGTTTCTACACCTTTATAAAGAATGTTTCGTTCCCCTCTCGATTGGAGATGTGGGATCTCACAATGTTTGTTTATTTTGGCAATCTATGTCTTAATTGTTTGGTTTGCTTTAAATAGAATTTTTTTTTAACTGAACCAAACTATAAATGCTGGGACAAAGGGAAAGAAACCTCAAACCAAACCCGTTTAGCTTGGATCGTTGGTTTGCTTTCGAACGCGTCTATAACTTGCAATTGATGTAGTTGTTCCGATTCACTTTACATGTGTGACTAAGGTGATGCGTTTTTTTCATAATATGGTGGTGTATGTAACAGTCCAAGTTCACCGCCAGCAAATATTGTCTGTTTTGGCCCATTACGTATTGCTATCAGTCTCTCAGTTTTAAAACGTATCTGCTAGGGAGAGGTTGCCATACTCTTATAAGGAATACTTTGTTCCCCTCTCCAATCGATGTGGGATCTCACAGTGTAGTTGTTACGTCGGTTTCTTTTCCTCTGATAAATGTTTCTAACCGTTGTGAATCCTGTTAATCCATGATATGGGGGTTATATGTGATCTATTGGCTTTTGTCTGAGAGCTTAGTTATCACCTTTGTAGCTAGCAAGACTGACCATTATGACTTCCCTGCACTCTGACACTATGTAGATATTTTGTACGATTCATGGTCGCCGGCAATGACCGTAAGTTCCATCTGTATCAGCATTCTCTCCATGCTGTCAAGCTCCCCCGCAAAGGTCTGATATACACAATCAATATGTTTTTCACCATCCTTTGACATTATTAAGATGCAAGAAGCAAATCAAAGCAGAATCCTTCTCTAATGGTCTATTGTTTTGAATTGCAGCAACGCCCTGACGATAACGATCGTTATGTAAAGAATTGTAGGAATGGAAGGTCTCCAAAGGAGACGAGGTGGTGGTTCCACGACGACAAAGTGTAA

mRNA sequence

ATGACCAGCTCCTCCGACTCCGCCCGCAAGGCTCTGAGTAAGATTGCCTGCAATCGCCTCCAGAAGGAGCTCGTTGAGTGGCAGGTCAACCCTCCCGCTGGTTTTAAACACAGGGTCACCGATAATCTTCAGAGGTGGGTGATTGAAGTCAACGGTGCCCCTGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGATTTCCCCGAACATTATCCAATGGAAGCCCCACAGGTTATATTTCTGCATCCAGCTCCCCTGCATCCTCATATCTATAGCAACGGTCACATTTGTCTAGATATTTTGTACGATTCATGGTCGCCGGCAATGACCGTAAGTTCCATCTGTATCAGCATTCTCTCCATGCTGTCAAGCTCCCCCGCAAAGCAACGCCCTGACGATAACGATCGTTATGTAAAGAATTGTAGGAATGGAAGGTCTCCAAAGGAGACGAGGTGGTGGTTCCACGACGACAAAGTGTAA

Coding sequence (CDS)

ATGACCAGCTCCTCCGACTCCGCCCGCAAGGCTCTGAGTAAGATTGCCTGCAATCGCCTCCAGAAGGAGCTCGTTGAGTGGCAGGTCAACCCTCCCGCTGGTTTTAAACACAGGGTCACCGATAATCTTCAGAGGTGGGTGATTGAAGTCAACGGTGCCCCTGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGATTTCCCCGAACATTATCCAATGGAAGCCCCACAGGTTATATTTCTGCATCCAGCTCCCCTGCATCCTCATATCTATAGCAACGGTCACATTTGTCTAGATATTTTGTACGATTCATGGTCGCCGGCAATGACCGTAAGTTCCATCTGTATCAGCATTCTCTCCATGCTGTCAAGCTCCCCCGCAAAGCAACGCCCTGACGATAACGATCGTTATGTAAAGAATTGTAGGAATGGAAGGTCTCCAAAGGAGACGAGGTGGTGGTTCCACGACGACAAAGTGTAA

Protein sequence

MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Homology
[Close]
BLAST of Csor.00g172400 vs. ExPASy Swiss-Prot
Match: Q9FMM0 (Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana OX=3702 GN=UBC18 PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.8e-84
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSS  +RKALSKIACNRLQKEL EWQVNPP GFKHRVTDNLQ+WVIEV GAPGTLYAN
Sbjct: 1   MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETY LQV+FP+HYPMEAPQVIF+ PAPLHPHIYSNGHICLDILYDSWSPAMTVSS+CISI
Sbjct: 61  ETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSSP KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy Swiss-Prot
Match: Q9FWT2 (Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana OX=3702 GN=UBC16 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 5.7e-83
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           M+SS   +RK LSKIA NRLQKELVEWQ+NPP GFKH+VTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           +TYQLQVDFPEHYPME+PQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSS  KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy Swiss-Prot
Match: P42743 (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana OX=3702 GN=UBC15 PE=2 SV=2)

HSP 1 Score: 307.4 bits (786), Expect = 9.7e-83
Identity = 140/161 (86.96%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSS  +RKALSKIACNRLQKEL EWQ+NPP GF+H+VTDNLQ+W I+V GAPGTLYAN
Sbjct: 1   MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQV+FPEHYPMEAPQV+F+ PAP HPHIYSNGHICLDILYDSWSPAMTV+S+CISI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSSPAKQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy Swiss-Prot
Match: O23239 (Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana OX=3702 GN=UBC17 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.5e-78
Identity = 133/161 (82.61%), Postives = 148/161 (91.93%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSS+S RK L+KIA NRLQKE +EWQ NPP+GFKHRV+DNLQRW+IEV+G PGTLYAN
Sbjct: 1   MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQV+FPEHYPMEAPQVIF HPAPLHPHIYSNGHICLD+LYDSWSPAM +SSIC+SI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSS  KQ+P DND Y+KNC++GRSPKETRW FHDDKV
Sbjct: 121 LSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy Swiss-Prot
Match: Q55EY8 (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum OX=44689 GN=ube2w PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.9e-42
Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 0 

Query: 19  RLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYANETYQLQVDFPEHYPMEAP 78
           RLQKEL++ + NPP        DNL +WVI V+G  G++Y  E ++LQ  F   YP+++P
Sbjct: 8   RLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSP 67

Query: 79  QVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSPAKQRPDDNDR 138
           +VIF+   P+HPHIYSNGHICL ILYD+WSPA+TVSS+C+SILSMLS    K RP D+ +
Sbjct: 68  EVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLSGCTEKIRPTDDSK 127

Query: 139 YVKNCRNGRSPKETRWWFHDDKV 162
           YV    N +SPKE RW FHDD V
Sbjct: 128 YVSRVLN-KSPKEVRWMFHDDTV 149

[Close]
BLAST of Csor.00g172400 vs. NCBI nr
Match: XP_022929509.1 (probable ubiquitin-conjugating enzyme E2 18 [Cucurbita moschata] >XP_022985349.1 probable ubiquitin-conjugating enzyme E2 18 [Cucurbita maxima] >XP_023553462.1 probable ubiquitin-conjugating enzyme E2 18 [Cucurbita pepo subsp. pepo] >KAG6577233.1 putative ubiquitin-conjugating enzyme E2 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341 bits (875), Expect = 1.42e-118
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. NCBI nr
Match: XP_022942312.1 (probable ubiquitin-conjugating enzyme E2 16 [Cucurbita moschata] >XP_022983104.1 probable ubiquitin-conjugating enzyme E2 16 [Cucurbita maxima] >XP_023513778.1 probable ubiquitin-conjugating enzyme E2 16 [Cucurbita pepo subsp. pepo] >KAG6600596.1 putative ubiquitin-conjugating enzyme E2 16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031233.1 putative ubiquitin-conjugating enzyme E2 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337 bits (864), Expect = 6.76e-117
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. NCBI nr
Match: XP_022136917.1 (probable ubiquitin-conjugating enzyme E2 16 [Momordica charantia])

HSP 1 Score: 336 bits (861), Expect = 1.94e-116
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSD+ARKALSKIACNRLQKELVEWQVNPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDTARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. NCBI nr
Match: XP_038877729.1 (probable ubiquitin-conjugating enzyme E2 16 [Benincasa hispida])

HSP 1 Score: 335 bits (858), Expect = 5.56e-116
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKEL+EWQ+NPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELLEWQLNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. NCBI nr
Match: XP_004146492.2 (probable ubiquitin-conjugating enzyme E2 16 [Cucumis sativus] >XP_008452114.1 PREDICTED: probable ubiquitin-conjugating enzyme E2 16 [Cucumis melo] >KAA0044779.1 putative ubiquitin-conjugating enzyme E2 16 [Cucumis melo var. makuwa] >KGN53285.1 hypothetical protein Csa_014866 [Cucumis sativus])

HSP 1 Score: 334 bits (857), Expect = 7.90e-116
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSA KALSKIACNRLQKELVEWQVNPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSALKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy TrEMBL
Match: A0A6J1JD15 (probable ubiquitin-conjugating enzyme E2 18 OS=Cucurbita maxima OX=3661 GN=LOC111483386 PE=3 SV=1)

HSP 1 Score: 341 bits (875), Expect = 6.87e-119
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy TrEMBL
Match: A0A6J1ENY4 (probable ubiquitin-conjugating enzyme E2 18 OS=Cucurbita moschata OX=3662 GN=LOC111436055 PE=3 SV=1)

HSP 1 Score: 341 bits (875), Expect = 6.87e-119
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy TrEMBL
Match: A0A6J1J6C9 (probable ubiquitin-conjugating enzyme E2 16 OS=Cucurbita maxima OX=3661 GN=LOC111481748 PE=3 SV=1)

HSP 1 Score: 337 bits (864), Expect = 3.27e-117
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy TrEMBL
Match: A0A6J1FPW6 (probable ubiquitin-conjugating enzyme E2 16 OS=Cucurbita moschata OX=3662 GN=LOC111447396 PE=3 SV=1)

HSP 1 Score: 337 bits (864), Expect = 3.27e-117
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. ExPASy TrEMBL
Match: A0A6J1C6S5 (probable ubiquitin-conjugating enzyme E2 16 OS=Momordica charantia OX=3673 GN=LOC111008493 PE=3 SV=1)

HSP 1 Score: 336 bits (861), Expect = 9.38e-117
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSSD+ARKALSKIACNRLQKELVEWQVNPPAGFKH+VTDNLQRWVIEVNGAPGTLYAN
Sbjct: 1   MTSSSDTARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161
           LSMLSSS AKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. TAIR 10
Match: AT5G42990.1 (ubiquitin-conjugating enzyme 18 )

HSP 1 Score: 313.2 bits (801), Expect = 1.3e-85
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSS  +RKALSKIACNRLQKEL EWQVNPP GFKHRVTDNLQ+WVIEV GAPGTLYAN
Sbjct: 1   MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETY LQV+FP+HYPMEAPQVIF+ PAPLHPHIYSNGHICLDILYDSWSPAMTVSS+CISI
Sbjct: 61  ETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSSP KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. TAIR 10
Match: AT1G75440.1 (ubiquitin-conjugating enzyme 16 )

HSP 1 Score: 308.1 bits (788), Expect = 4.0e-84
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           M+SS   +RK LSKIA NRLQKELVEWQ+NPP GFKH+VTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           +TYQLQVDFPEHYPME+PQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSS  KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. TAIR 10
Match: AT1G45050.1 (Ubiquitin-conjugating enzyme family protein )

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-84
Identity = 140/161 (86.96%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSS  +RKALSKIACNRLQKEL EWQ+NPP GF+H+VTDNLQ+W I+V GAPGTLYAN
Sbjct: 1   MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQV+FPEHYPMEAPQV+F+ PAP HPHIYSNGHICLDILYDSWSPAMTV+S+CISI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSSPAKQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. TAIR 10
Match: AT4G36410.1 (ubiquitin-conjugating enzyme 17 )

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-79
Identity = 133/161 (82.61%), Postives = 148/161 (91.93%), Query Frame = 0 

Query: 1   MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHRVTDNLQRWVIEVNGAPGTLYAN 60
           MTSSS+S RK L+KIA NRLQKE +EWQ NPP+GFKHRV+DNLQRW+IEV+G PGTLYAN
Sbjct: 1   MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYAN 60

Query: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
           ETYQLQV+FPEHYPMEAPQVIF HPAPLHPHIYSNGHICLD+LYDSWSPAM +SSIC+SI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSI 120

Query: 121 LSMLSSSPAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 162
           LSMLSSS  KQ+P DND Y+KNC++GRSPKETRW FHDDKV
Sbjct: 121 LSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161

[Close]
BLAST of Csor.00g172400 vs. TAIR 10
Match: AT2G16740.1 (ubiquitin-conjugating enzyme 29 )

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-17
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 0 

Query: 15  IACNRLQKELVEWQVNPPAGFKHRVT-DNLQRWVIEVNGAPGTLYANETYQLQVDFPEHY 74
           +A  R+ KEL E Q +PP       T +++  W   + G   + Y+   + + + FP  Y
Sbjct: 1   MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDY 60

Query: 75  PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSPAKQRP 134
           P + P+V+F      HP+I SNG+ICLDIL D WSPA+T+S + +SI S+L+       P
Sbjct: 61  PFKPPKVVF-RTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTD----PNP 117

Query: 135 DD 136
           DD
Sbjct: 121 DD 117

The following BLAST results are available for this feature:
BLAST of Csor.00g172400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FMM01.8e-8490.06Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana OX=3702 GN=U... [more]
Q9FWT25.7e-8388.82Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana OX=3702 GN=U... [more]
P427439.7e-8386.96Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana OX=3702 GN=UBC15 PE=2 SV... [more]
O232392.5e-7882.61Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana OX=3702 GN=U... [more]
Q55EY84.9e-4255.94Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum OX=44689 ... [more]
BLAST of Csor.00g172400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929509.11.42e-118100.00probable ubiquitin-conjugating enzyme E2 18 [Cucurbita moschata] >XP_022985349.1... [more]
XP_022942312.16.76e-11798.76probable ubiquitin-conjugating enzyme E2 16 [Cucurbita moschata] >XP_022983104.1... [more]
XP_022136917.11.94e-11698.14probable ubiquitin-conjugating enzyme E2 16 [Momordica charantia][more]
XP_038877729.15.56e-11697.52probable ubiquitin-conjugating enzyme E2 16 [Benincasa hispida][more]
XP_004146492.27.90e-11698.14probable ubiquitin-conjugating enzyme E2 16 [Cucumis sativus] >XP_008452114.1 PR... [more]
BLAST of Csor.00g172400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JD156.87e-119100.00probable ubiquitin-conjugating enzyme E2 18 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1ENY46.87e-119100.00probable ubiquitin-conjugating enzyme E2 18 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1J6C93.27e-11798.76probable ubiquitin-conjugating enzyme E2 16 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FPW63.27e-11798.76probable ubiquitin-conjugating enzyme E2 16 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1C6S59.38e-11798.14probable ubiquitin-conjugating enzyme E2 16 OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Csor.00g172400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G42990.11.3e-8590.06ubiquitin-conjugating enzyme 18 [more]
AT1G75440.14.0e-8488.82ubiquitin-conjugating enzyme 16 [more]
AT1G45050.16.9e-8486.96Ubiquitin-conjugating enzyme family protein [more]
AT4G36410.11.8e-7982.61ubiquitin-conjugating enzyme 17 [more]
AT2G16740.15.6e-1737.70ubiquitin-conjugating enzyme 29 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 18..161
e-value: 1.3E-47
score: 174.2
NoneNo IPR availablePANTHERPTHR24068:SF302UBIQUITIN-CONJUGATING ENZYME E2 16-RELATEDcoord: 11..161
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 11..161
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 19..154
e-value: 1.7E-38
score: 131.4
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 15..161
score: 40.567196
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 17..117
e-value: 3.4637E-37
score: 122.696
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 15..161
e-value: 1.4E-47
score: 163.0
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 8..138
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBC_1coord: 88..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g172400.m01Csor.00g172400.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0061631 ubiquitin conjugating enzyme activity