Csor.00g171900 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g171900
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transcription initiation factor IIE subunit beta
Location	Csor_Chr16: 3078257 .. 3083185 (+)
RNA-Seq Expression	Csor.00g171900
Synteny	Csor.00g171900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGGTTCACACCTATCGCCCATCTTTCTTATTTCCCCCTTTTTGTTTTCTTACTTATACCTTATCTGCTTTACCTGGACTATTGTGTTCGATCGAATTCTTTGGAAGGCTGTGTATAGGGTAGGATTTAGTGCATGTTTTTGGGAGTGATTTTAAAAGGGCTAAAATTACTTTTGCCATGTTCATCAAAAGGACTCTAAAAACATGTTTTTTATAATTCAAAATAAATTTAATGTTTGATTTTGTACGAATATGTAATTTTCATAACATCAAAATTAATTTTCAAGTATTAAAAACATGTTTTTAGTGTTTTTTTAATATTAGAAGTGTTTTTAACTATCTCAAAGTCACTCCCAAACATGTCATGTTAATAGACACATAGATTCAAAATGAGCAGACCTTATGCTGAAATTTATCATATTTCTTGTTTTTAGTCTGTCCAAATTTTGCTAAATTCGATACATGTCTTTCTGAATGATCAATTTTTGAACCGGGAGATTTGGCTGGTTTGAATACTTTTTCCAGGTAGTGAAACTTGTGATTGCCCGCTAAGATGGCAAGAGGAGCTAGGATCCTCTTTAATGGCTTTTATGTGATCGTTTTCCTTACTTTGTGTTGGTGAAAAAAATGCATTTGAACATGCCAATCCCCTTCCCTTTCTCCCTGGTTTTGAATTGGCTGTGAAAAAGCTAAAAAAAGTCCTGAAATGCATTCTCTCTACTGTTAGTTAATTCAAACCTCAGGGGTATGTTACAATCTTACAGCTTGCTTATTGTGCATGTTAACAGACAAGACAAGCCTTTACACCTGAGCAAATTAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGGTAATTTAATTTTTCAAGCACCTGTATACTTTGCATGAACTTGTTCTTGTTTGGTTTAAAAGTTTAAACGTTCAAGATGACGTTTTTTCCTCTTTTTTCTGTTCTTGATATATTCAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGTATGTATAATTGAGAATTTTTTTTTTTTATATGCTTTCCCCGTTTTAAATTCGAAAAAGTGAAAATAACATATCACCCTTGGATGACGCTCTCCTCATTTGAACTGCTTGGGTAACAACCTTTGTGAAGCTTAATGTACTGACTATTTTGGACATCAAATGTCTAGTGTAAATTTTGAGATTTTAAGGCTGTGTATTTTCTTTGCACAATAATTGGAATTATAATTAGTTTACAATTCTAATTACTCTGGAGATTAGTGCAAGAGTCCGTTGAGACCTGGATTCTTATTTGTATACGATATTAAACATAGTGTAAATTAAAGTCATTATGATTAAGTTTTGATTTGTCCAATAAAAGGGGTATTTTGAGAGTTTATGAAAAACAACTTTCTTTGGTAGCTGCTGAATGGTGATTTTTGTGTACCCAATAGCCTTAAACGAAAATAGAAGGAAATATTTGTTTACCAAACTAGCTGTGAGGAAAGCCCCCAATGTCCTTCGCTAGTATACCCTTGTGTTTTCTTTCCTCGTTTTTTCTTCTCTTCTCTCCATTCCTCCAGTTCCAGACTGATTTTAGAGAAAGTTCGTTTCTTCCTACAGAAATCTGATTGATGCCTGTATGGCTTGCTAACTATTCATGTCAATGTTCTGGGTTCTTGGTCATGTTATACCTCACAAGTCGGCTTGTTTAATTCTCTTCCAGGTTAGACTGTAGTGTCTCCTTGTGCACTAGAAGGCTTTGTTCATTCAACAATTCCTGTTTAAGGCTATTGTGAAAACCTTGGCTGGTAGATTGAAGATTGAAATGAGTCCTTTCTAATACGATTTCTAACACTCAAGGTGCCTTTATAGCCTGTTGGAAAATTTTAGACCAAGTGCTTATAGCTAATGAAGCTATTGAGGACCATAAGGAAAGGAATGGAAAGGAAAGAAGAGGGGATTATCTTTAAAATTGATTTTGAGTAAGTTGATGATCATGTGGATTGGGACTTTTTGGACAAAGCTTTAGGGAAGAAAGTTTTTTGGGGTTAAATGGAGAGGTAAAATGTATAATTGTATTAGGTCAGTTAATTTTTTCATTTTTGTCAACGGGAGGTCTAGAGGTAAGATTTCAACAATGAGAGGCCTTAGACAAGGGGGTTCTCTTTCTCCCTTTCTCTTTATCTTGGTGGTGGATGTCTTGTGTAGATGAGTATCAGCTGGTGTGGATAAGGGTGTTTTCAAGAGTTTTAAGGTGGGCAAGGACTTAGTCTATCTTTCGCCTCTTCAGTTTGCGGACAGTTATGACCTTCGAGTGGGGAGTCGAGGGGTGAATGTAAATTCCTCTGGAAAGCTATATCTTCAAGTCTTCCCTCTTTTTCTCAATTCATTTATTGTTTTTTGGGAGACAAACTTTGGGTGATTTTTCCCCTCATCTCTACCTTCTCTCGGATAAGAAGTTACATGGGTGGCTTCAGTGTTGTCATCTACTGACCAATCTTCTTTGATTTTTTGCACTTTCGTCACCCTCTATCAGATAGAGAGGAGGTTGAGGTGATAGATCTTCTTTTTATCCTTCAAGACCGGCCCTGGGAGGAGGGATGTTAGAAATTAGAAGGTGGTCCCCTGATCCTAATAGATGATTCTCTTGTCATTCCTTCTTCAACCTTTTATCCTCTCCCCCTGCTTAATCGGCTAATCGGCTGCTCTTGAGGCGATAGTCTTCTCCCCTTTACGGAAGATAAAAGTTACAGAAAATGTTAAGGTTTTTTCTTGGCAGGTTTTATTAGGGCGAGTCAATACCTTAGATTGTGTCCAAAGGCATTTCTCCTTTGCCTTGTTTCCGCAATCGTGCATTCTCTGTAGGAGGGATCATGATGATCCTAGTCACTTGTTGTTGGAAGTGCCAGTTCGTGAATTACCATTAGGACCAGTGGCAGAGTTCTTTAGGGGTTATTGGGGCTCGGAATAGGGATGGGTGTTCTTTTTTGAAAGAGGTGGCTTTGCACTTCCCTTTTAGGGAGAAGCGTATAGTATTTTGTCAGGCAAGCTTCCTTGCTATTTTGTGTGATGTTTGGTTGGAGCGTAAGAGTAGAATTTGTAGGGATGTGGGGAAATCTAGAGTGGAGGTTTGGGAGTTGGTGAGCTTTAATGCTTCCATTTGGGCTTCGGTCACTAAACCGTTTTGTAAGTATGATACCGGTCTTGTTTTTTGGGGCTTGTTTTTTGTTCACTCTTGTATTCTTTTATTTTTTTTAGTAGAAAGTTCGGTTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAGAATAAAAGAATAAAAAATCCTTCCCAAAAGTGGTAGAGAATAATGTTATCTATGAGCAGTTAAAATTGAAATCAAAGGATTTAACCCCATGATTTATAATCCTTGTCAAAACTAATGGATTTTCTAACGAGGAGCAAAGTTTTCACTGAAAAACATGAAATAATTCAAAGAGCAAACAAAAGTACAATCCAATAAGAGGAGCTAATTTGAGACCAACCAAACGAAAAAGAGTCCAATTTAAAAGAATAAGGTCTAACAATAGTTACAACAAGTCTTGGAAACCAATGTCCAAAGGGAAGCATTATTCTTATGGTTGATGCATCTAAACTGTAGTTGAGAATTTTCAGAAATATACTAGAATTGCTTTTGGTATAAAACTTGTACCATTAAGCTAAGAAAAGGTGGTAGGGTCTAAAAATCCATGTCACAACAACTTCAGTTCCTCGAAGTGATCTTGGTAACCAGAATAAAACATTTGAGGCTAGTATGAAGATGAACTTGAAGATAGCATGTTATTGAGCTTGAAGACTTTGGTATGGCATTCAGAGATTCATTATGACTTAAGTTATGTCAACTTCCCAAATAATGTTTGAAAAATCAACAGTACAAGCATTCTTCATGATATTAGTGAAAAAAGATGAACTTTCCTTGCGCTTGTAGATCAGTTTATCAGTTATTGAGAGAAGTAATTATTTTATTTCACTAGTAGATTACTATGGAAGTTCTGTTAGAATTTGGTTCTTTTATTGTAAATATCTACGTCCATACTTATCTGATACGTCACGAGTTTTACTTATAGGTATTGATTTGGAGGTTGTTTCTTGTAAAGTATGTCTATTTGTTTCCATACTTGTTGATCACCAGTTTTTTGGCCTCCCCAACTTTATGAACTTTGTTTTGATGGAACCGTCTTCTTTGCTTATTAATGAATGGAAAGCACATGGATGTACTCTTCTTTGGTTATATAATGAATGGAAAACACAGTCCATGAGCTTTGCATAATCCTTTCCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATCGAATTACCTCGTGATATGCTGGATGTCGAAAAGGATCTGCAGAAGAATGGATGA

mRNA sequence

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATTAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATCGAATTACCTCGTGATATGCTGGATGTCGAAAAGGATCTGCAGAAGAATGGATGA

Coding sequence (CDS)

ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAACAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCTATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATTAATGAATCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATCGAATTACCTCGTGATATGCTGGATGTCGAAAAGGATCTGCAGAAGAATGGATGA

Protein sequence

MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG

Homology

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BLAST of Csor.00g171900 vs. ExPASy Swiss-Prot
Match: Q54KJ8 (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.0e-13
Identity = 59/222 (26.58%), Postives = 118/222 (53.15%), Query Frame = 0


Query: 10  FKRQQERCQTTLSGI-AASKTTTTTPRFTPAPAASRPPAPAIKFSN-DTERLQHINSIRK 69
           FK  Q +   TL+ I   S +T +  ++ P  +     + A + S+  T        +++
Sbjct: 6   FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANRQSSIYTANTLRDKQVKE 65

Query: 70  SPVGAQIKRVIDLL--LETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYDGR-RF 129
            P    +  +++ L  LE   A T E ++ + ++ I+    + + LRNN K+   G  RF
Sbjct: 66  KPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDHGNDRF 125

Query: 130 SYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQE 189
           S+K K +++ +  +L L+  +P GI V +L +SY +   D++ LK + Q++ +   +S  
Sbjct: 126 SFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAESAC 185

Query: 190 DIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 227
           DI +PND R+++ +  +L  +++ I+LP +  D+EK+++  G
Sbjct: 186 DIIFPNDERLRVPLSSELVDMWKSIKLPNE-ADLEKEMKDAG 225

[Close]

BLAST of Csor.00g171900 vs. ExPASy Swiss-Prot
Match: P79011 (Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfa2 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 52/195 (26.67%), Postives = 99/195 (50.77%), Query Frame = 0


Query: 41  AASRPPAPAIKFSNDTERLQHINSIRKSPVG----AQIKRVIDLLLETRQAFTPEQINES 100
           AAS P + ++K       L + +    S VG    +Q+   ++ L E  +  T E+I  +
Sbjct: 47  AASSPGSYSLKKKRSKTSLVY-SQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEI--A 106

Query: 101 CYVDINSNKAVFDSLRNNPKVHYDGRR--FSYKSKHDLKDKNQLLYLI--RKFPEGIAVI 160
            Y+       + + L+ N +++YD R   F++K  H+++    LL  +  +K   G+++ 
Sbjct: 107 SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVGMSIK 166

Query: 161 DLKDSYPSVMEDLQALKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIEL 220
           +L+D +P+V  +L+ L+  G+V LL +  D    + + ND      VD + +Q++ EI +
Sbjct: 167 ELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKMVWRNDKSCDCHVDKEFQQVWHEIPI 226

Query: 221 PRDMLDVEKDLQKNG 227
           P   LD+  +L K G
Sbjct: 227 P-PTLDLASELGKYG 237

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BLAST of Csor.00g171900 vs. NCBI nr
Match: KAG6577183.1 (General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 440 bits (1131), Expect = 1.87e-155
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226

[Close]

BLAST of Csor.00g171900 vs. NCBI nr
Match: XP_022931511.1 (general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_023552207.1 general transcription factor IIE subunit 2-like [Cucurbita pepo subsp. pepo] >KAG7015180.1 General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 440 bits (1131), Expect = 1.06e-154
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226

[Close]

BLAST of Csor.00g171900 vs. NCBI nr
Match: XP_022984812.1 (general transcription factor IIE subunit 2-like [Cucurbita maxima])

HSP 1 Score: 439 bits (1128), Expect = 3.04e-154
Identity = 225/226 (99.56%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226

[Close]

BLAST of Csor.00g171900 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida])

HSP 1 Score: 421 bits (1082), Expect = 3.21e-147
Identity = 215/227 (94.71%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAASRPPAPAIKFSNDTERL 60
           MALQE+LDRFK+QQERCQTTLSGIAA+K+ + +TP+FTPAPAASRPPAPA+KFSNDTERL
Sbjct: 1   MALQEQLDRFKKQQERCQTTLSGIAAAKSASKSTPKFTPAPAASRPPAPAVKFSNDTERL 60

Query: 61  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHY 120
           QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHY
Sbjct: 61  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120

Query: 121 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSN 180
           DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSN
Sbjct: 121 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 227

[Close]

BLAST of Csor.00g171900 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus])

HSP 1 Score: 414 bits (1064), Expect = 1.91e-144
Identity = 213/229 (93.01%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 229

[Close]

BLAST of Csor.00g171900 vs. ExPASy TrEMBL
Match: A0A6J1ETU7 (Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111437664 PE=4 SV=1)

HSP 1 Score: 440 bits (1131), Expect = 5.14e-155
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226

[Close]

BLAST of Csor.00g171900 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1)

HSP 1 Score: 439 bits (1128), Expect = 1.47e-154
Identity = 225/226 (99.56%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAVFDSLRNNPKVHYD
Sbjct: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF
Sbjct: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 180

Query: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 DSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226

[Close]

BLAST of Csor.00g171900 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 414 bits (1064), Expect = 9.23e-145
Identity = 213/229 (93.01%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 229

[Close]

BLAST of Csor.00g171900 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 2.17e-143
Identity = 213/229 (93.01%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 229

[Close]

BLAST of Csor.00g171900 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 2.17e-143
Identity = 213/229 (93.01%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RP APA+KFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 226
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 229

[Close]

BLAST of Csor.00g171900 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-79
Identity = 153/230 (66.52%), Postives = 190/230 (82.61%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPR-FTPAPAA---SRPPAPAIKFSNDT 60
           MAL+E+LD+F +QQ +CQ+TLS IA+S+  T++ R   P PAA    +P A  +KFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPK 120
           ERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE C+VD+++NKAVFDSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 121 VHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWL 180
            HYDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKD+YP+VMEDL+AL ASG ++L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 227
           LSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIG 228

[Close]

BLAST of Csor.00g171900 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-65
Identity = 131/227 (57.71%), Postives = 174/227 (76.65%), Query Frame = 0


Query: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQ 60
           MAL+E+LD+F +QQE+CQ+TLS I++S+T  +      A  + +P     KFS +T++LQ
Sbjct: 1   MALREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENTKQLQ 60

Query: 61  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKVHYD 120
           HI +IR S VGAQ+K VIDLL +TR A+T EQINE+CYVD+++NKAVFDSLR NPKVHYD
Sbjct: 61  HITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKVHYD 120

Query: 121 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQV-WLLSN 180
           GRRFSYK+ H++KDK QLL  + K  + I V DLKD+YP+VMEDL++LK+SG++ WLLSN
Sbjct: 121 GRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 227
            DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G
Sbjct: 181 TDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIG 225

The following BLAST results are available for this feature:

BLAST of Csor.00g171900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54KJ8	3.0e-13	26.58	General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
P79011	1.7e-08	26.67	Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (s...	[more]

BLAST of Csor.00g171900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577183.1	1.87e-155	100.00	General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subs...	[more]
XP_022931511.1	1.06e-154	100.00	general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_0235522...	[more]
XP_022984812.1	3.04e-154	99.56	general transcription factor IIE subunit 2-like [Cucurbita maxima]	[more]
XP_038906431.1	3.21e-147	94.71	general transcription factor IIE subunit 2-like [Benincasa hispida]	[more]
XP_011653191.1	1.91e-144	93.01	general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothe...	[more]

BLAST of Csor.00g171900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETU7	5.14e-155	100.00	Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1J372	1.47e-154	99.56	Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0KWU5	9.23e-145	93.01	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BS95	2.17e-143	93.01	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TNR4	2.17e-143	93.01	Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Csor.00g171900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20330.1	1.4e-79	66.52	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	2.6e-65	57.71	Transcription initiation factor TFIIE, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PFAM	PF02186	TFIIE_beta	coord: 72..131 e-value: 9.0E-10 score: 38.7
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PROSITE	PS51351	TFIIE_BETA_C	coord: 58..133 score: 11.039589
IPR040501	TFA2, Winged helix domain 2	PFAM	PF18121	TFA2_Winged_2	coord: 133..190 e-value: 3.4E-15 score: 55.5
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 1..226
None	No IPR available	PANTHER	PTHR12716:SF12	TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA	coord: 1..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g171900.m01	Csor.00g171900.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005673	transcription factor TFIIE complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity