Csor.00g171850 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g171850
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	isoprenoid F
Location	Csor_Chr16: 3053442 .. 3054188 (+)
RNA-Seq Expression	Csor.00g171850
Synteny	Csor.00g171850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTTTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGGTGTTTTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATCTTCACAGGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGGTTCTTGGTTGTTCTTCTCTTTTTTGTTCTTGTTGGTTGCTCTGCTGCTGAAGAAATGGGGAAATTTTTACCAAATTAGTTGTGTGTGTTTTTTTGCTTTGAATTATTAGCTCAGATTTGTTGTTGATTTAGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCATCTGTTTTTATTAAAGAAGCTTTAAGTGGTTGTGTATGTGGTAGCAAATTCTTGCGCACTTACCAAATTTTGCTTTGTTTATATATGAATCATGTCCTCTTTGACTTCACTTATTTAAATTGAGCCACTTGGTACACTGTACAGATGATCTATATGCTTGAATACATGATGTCACGATATCTTTTATGCTTGCATATGGCTCTCTTTAGGGAGTCCCTCAATAG

mRNA sequence

ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTTTTCTTCGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCATCTGTTTTTATTAAAGAAGCTTTAAGTGGTTGTGGAGTCCCTCAATAG

Coding sequence (CDS)

ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTTTTCTTCGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCATCTGTTTTTATTAAAGAAGCTTTAAGTGGTTGTGGAGTCCCTCAATAG

Protein sequence

MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAVFFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEALSGCGVPQ

Homology

[Close]

BLAST of Csor.00g171850 vs. ExPASy Swiss-Prot
Match: Q9M4W3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=ISPF PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAL 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+
Sbjct: 123 VVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAV 160

[Close]

BLAST of Csor.00g171850 vs. NCBI nr
Match: KAG6577178.1 (hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (562), Expect = 1.38e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAV 60
           MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAV
Sbjct: 1   MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAV 60

Query: 61  FFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEALSGCGVPQ 107
           FFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEALSGCGVPQ
Sbjct: 61  FFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEALSGCGVPQ 107

[Close]

BLAST of Csor.00g171850 vs. NCBI nr
Match: KAG7015175.1 (hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 5.41e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV 38
          MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV
Sbjct: 13 MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV 50

[Close]

BLAST of Csor.00g171850 vs. NCBI nr
Match: KAF7846765.1 (hypothetical protein BT93_L3776 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 48.1 bits (113), Expect = 5.14e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 121 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 159

[Close]

BLAST of Csor.00g171850 vs. NCBI nr
Match: KAG8496882.1 (hypothetical protein CXB51_008066 [Gossypium anomalum])

HSP 1 Score: 48.1 bits (113), Expect = 5.54e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. NCBI nr
Match: MBA0735383.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 48.1 bits (113), Expect = 5.54e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. ExPASy TrEMBL
Match: A0A7J9BGS1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium gossypioides OX=34282 GN=Gogos_019237 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.68e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. ExPASy TrEMBL
Match: A0A7J9DL08 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium trilobum OX=34281 GN=Gotri_024082 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.68e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. ExPASy TrEMBL
Match: A0A7J8R6B1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium davidsonii OX=34287 GN=Godav_021042 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.68e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. ExPASy TrEMBL
Match: A0A5B6ULN9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium australe OX=47621 GN=ispF PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.68e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. ExPASy TrEMBL
Match: A0A7J8U0J5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium klotzschianum OX=34286 GN=Goklo_028162 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.68e-04
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEALS 101
           ++DAIL AL LPD+ +       KWKGAPSSVFIKEA+S
Sbjct: 123 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVS 161

[Close]

BLAST of Csor.00g171850 vs. TAIR 10
Match: AT1G63970.1 (isoprenoid F )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 67  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAL 101
           ++DAIL AL LPD+ +       KWKGA SSVFIKEA+
Sbjct: 118 VVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAV 155

[Close]

BLAST of Csor.00g171850 vs. TAIR 10
Match: AT1G63970.2 (isoprenoid F )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 68  IDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAL 101
           +DAIL AL LPD+ +       KWKGA SSVFIKEA+
Sbjct: 111 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAV 147

The following BLAST results are available for this feature:

BLAST of Csor.00g171850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4W3	2.7e-04	60.53	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan...	[more]

BLAST of Csor.00g171850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577178.1	1.38e-72	100.00	hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015175.1	5.41e-16	100.00	hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF7846765.1	5.14e-04	61.54	hypothetical protein BT93_L3776 [Corymbia citriodora subsp. variegata]	[more]
KAG8496882.1	5.54e-04	61.54	hypothetical protein CXB51_008066 [Gossypium anomalum]	[more]
MBA0735383.1	5.54e-04	61.54	hypothetical protein [Gossypium gossypioides]	[more]

BLAST of Csor.00g171850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9BGS1	2.68e-04	61.54	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium gossypioides ...	[more]
A0A7J9DL08	2.68e-04	61.54	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium trilobum OX=3...	[more]
A0A7J8R6B1	2.68e-04	61.54	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium davidsonii OX...	[more]
A0A5B6ULN9	2.68e-04	61.54	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium australe OX=4...	[more]
A0A7J8U0J5	2.68e-04	61.54	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gossypium klotzschianum...	[more]

BLAST of Csor.00g171850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63970.1	1.6e-04	57.89	isoprenoid F	[more]
AT1G63970.2	2.1e-04	59.46	isoprenoid F	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g171850.m01	Csor.00g171850.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
molecular_function	GO:0016829	lyase activity