Csor.00g171410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g171410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr19: 4998216 .. 4998563 (+)
RNA-Seq Expression	Csor.00g171410
Synteny	Csor.00g171410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTATAAACGGCAAGATGGAGGAGAGTGAAGCCAAGATCATCCTTAGCATTGAGAAAGGTCTTAACATCATATCTACCCTCAATCCCTCCGACCAGCAGCCGCAAGGCCTGCAGCCGCCCATTCATAGCCGCAAAATGCATAGGATTTCTGCCATCATTACTGCACAGAAAGCAGAGTTCCGAATCAAATTGAAGCAAGTGCGTAATGATATTGAGATGCCATTGGCAGCCGCCATGTGCAGAGCCGACAAGCCTTGGCGGTCGGAGTGGTGGGCTGATGCAGGCTCCAATTCCAACACCCTCACCACAAAATCAAAGTGCCCAAAAGAGGCAGCCACTTGA

mRNA sequence

ATGTTGATTATAAACGGCAAGATGGAGGAGAGTGAAGCCAAGATCATCCTTAGCATTGAGAAAGGTCTTAACATCATATCTACCCTCAATCCCTCCGACCAGCAGCCGCAAGGCCTGCAGCCGCCCATTCATAGCCGCAAAATGCATAGGATTTCTGCCATCATTACTGCACAGAAAGCAGAGTTCCGAATCAAATTGAAGCAAGTGCGTAATGATATTGAGATGCCATTGGCAGCCGCCATGTGCAGAGCCGACAAGCCTTGGCGGTCGGAGTGGTGGGCTGATGCAGGCTCCAATTCCAACACCCTCACCACAAAATCAAAGTGCCCAAAAGAGGCAGCCACTTGA

Coding sequence (CDS)

ATGTTGATTATAAACGGCAAGATGGAGGAGAGTGAAGCCAAGATCATCCTTAGCATTGAGAAAGGTCTTAACATCATATCTACCCTCAATCCCTCCGACCAGCAGCCGCAAGGCCTGCAGCCGCCCATTCATAGCCGCAAAATGCATAGGATTTCTGCCATCATTACTGCACAGAAAGCAGAGTTCCGAATCAAATTGAAGCAAGTGCGTAATGATATTGAGATGCCATTGGCAGCCGCCATGTGCAGAGCCGACAAGCCTTGGCGGTCGGAGTGGTGGGCTGATGCAGGCTCCAATTCCAACACCCTCACCACAAAATCAAAGTGCCCAAAAGAGGCAGCCACTTGA

Protein sequence

MLIINGKMEESEAKIILSIEKGLNIISTLNPSDQQPQGLQPPIHSRKMHRISAIITAQKAEFRIKLKQVRNDIEMPLAAAMCRADKPWRSEWWADAGSNSNTLTTKSKCPKEAAT

Homology

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BLAST of Csor.00g171410 vs. NCBI nr
Match: KAG6571769.1 (hypothetical protein SDJN03_28497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230 bits (587), Expect = 3.83e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MLIINGKMEESEAKIILSIEKGLNIISTLNPSDQQPQGLQPPIHSRKMHRISAIITAQKA 60
           MLIINGKMEESEAKIILSIEKGLNIISTLNPSDQQPQGLQPPIHSRKMHRISAIITAQKA
Sbjct: 1   MLIINGKMEESEAKIILSIEKGLNIISTLNPSDQQPQGLQPPIHSRKMHRISAIITAQKA 60

Query: 61  EFRIKLKQVRNDIEMPLAAAMCRADKPWRSEWWADAGSNSNTLTTKSKCPKEAAT 115
           EFRIKLKQVRNDIEMPLAAAMCRADKPWRSEWWADAGSNSNTLTTKSKCPKEAAT
Sbjct: 61  EFRIKLKQVRNDIEMPLAAAMCRADKPWRSEWWADAGSNSNTLTTKSKCPKEAAT 115

The following BLAST results are available for this feature:

BLAST of Csor.00g171410 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g171410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571769.1	3.83e-76	100.00	hypothetical protein SDJN03_28497, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g171410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g171410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g171410.m01	Csor.00g171410.m01	mRNA