Csor.00g170620 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g170620
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr13: 11157749 .. 11158156 (-)
RNA-Seq Expression	Csor.00g170620
Synteny	Csor.00g170620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGAAGAAGAAGAAGAACAAGAACAAGAACAAGAACAAGAAGATGATGAAGAAGGAAGGGACGGGGATGGCGGAAAGAGGATGGCGGAGAGGGAGAATGGCGGAAAGGGAAGGTAATGGGGGAAGGCAATGGGGGAAGGCAATGGGGGACGTGCATGCAATGCTCTGCTTAGATCGCACGAAAGGTCGGCCTAAGAATTCGGCTGTGAAAATTAGCGCAACCAATCAGCAAGAAATCGTTTGGGCGATGGCGATGGCGTTATCAAAATTGAAAACTCCAACCGGTTCCCTCCGCCCCTTCTTTTCTCCTTTTCGATCCATAATCCCTCCCTTTTTTGCCTTCCCACATCGCTTAACTACGTTTTATCGCACAAATTCAAACTCCAATCTAAACAAATAA

mRNA sequence

ATGAAGAAGAAGAAGAAGAAGAAGAACAAGAACAAGAACAAGAACAAGAAGATGATGAAGAAGGAAGGGACGGGGATGGCGGAAAGAGGATGGCGGAGAGGGAGAATGGCGGAAAGGGAAGGTAATGGGGGAAGGCAATGGGGGAAGGCAATGGGGGACGTGCATGCAATGCTCTGCTTAGATCGCACGAAAGGTCGGCCTAAGAATTCGGCTGTGAAAATTAGCGCAACCAATCAGCAAGAAATCGTTTGGGCGATGGCGATGGCGTTATCAAAATTGAAAACTCCAACCGGTTCCCTCCGCCCCTTCTTTTCTCCTTTTCGATCCATAATCCCTCCCTTTTTTGCCTTCCCACATCGCTTAACTACGTTTTATCGCACAAATTCAAACTCCAATCTAAACAAATAA

Coding sequence (CDS)

ATGAAGAAGAAGAAGAAGAAGAAGAACAAGAACAAGAACAAGAACAAGAAGATGATGAAGAAGGAAGGGACGGGGATGGCGGAAAGAGGATGGCGGAGAGGGAGAATGGCGGAAAGGGAAGGTAATGGGGGAAGGCAATGGGGGAAGGCAATGGGGGACGTGCATGCAATGCTCTGCTTAGATCGCACGAAAGGTCGGCCTAAGAATTCGGCTGTGAAAATTAGCGCAACCAATCAGCAAGAAATCGTTTGGGCGATGGCGATGGCGTTATCAAAATTGAAAACTCCAACCGGTTCCCTCCGCCCCTTCTTTTCTCCTTTTCGATCCATAATCCCTCCCTTTTTTGCCTTCCCACATCGCTTAACTACGTTTTATCGCACAAATTCAAACTCCAATCTAAACAAATAA

Protein sequence

MKKKKKKKNKNKNKNKKMMKKEGTGMAERGWRRGRMAEREGNGGRQWGKAMGDVHAMLCLDRTKGRPKNSAVKISATNQQEIVWAMAMALSKLKTPTGSLRPFFSPFRSIIPPFFAFPHRLTTFYRTNSNSNLNK

Homology

[Close]

BLAST of Csor.00g170620 vs. NCBI nr
Match: KAG6584467.1 (hypothetical protein SDJN03_20399, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258 bits (658), Expect = 2.51e-86
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MKKKKKKKNKNKNKNKKMMKKEGTGMAERGWRRGRMAEREGNGGRQWGKAMGDVHAMLCL 60
           MKKKKKKKNKNKNKNKKMMKKEGTGMAERGWRRGRMAEREGNGGRQWGKAMGDVHAMLCL
Sbjct: 1   MKKKKKKKNKNKNKNKKMMKKEGTGMAERGWRRGRMAEREGNGGRQWGKAMGDVHAMLCL 60

Query: 61  DRTKGRPKNSAVKISATNQQEIVWAMAMALSKLKTPTGSLRPFFSPFRSIIPPFFAFPHR 120
           DRTKGRPKNSAVKISATNQQEIVWAMAMALSKLKTPTGSLRPFFSPFRSIIPPFFAFPHR
Sbjct: 61  DRTKGRPKNSAVKISATNQQEIVWAMAMALSKLKTPTGSLRPFFSPFRSIIPPFFAFPHR 120

Query: 121 LTTFYRTNSNSNLNK 135
           LTTFYRTNSNSNLNK
Sbjct: 121 LTTFYRTNSNSNLNK 135

[Close]

BLAST of Csor.00g170620 vs. NCBI nr
Match: KAG6607453.1 (hypothetical protein SDJN03_00795, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 49.3 bits (116), Expect = 1.26e-04
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 54 VH-AMLCL---DRTKGRPKNSAVKISATNQQEIVWAM 86
          VH AM C    DRTKG+PK SAVKIS TNQQEIVWA+
Sbjct: 52 VHDAMQCCAWKDRTKGQPKISAVKISGTNQQEIVWAI 88

The following BLAST results are available for this feature:

BLAST of Csor.00g170620 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g170620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584467.1	2.51e-86	100.00	hypothetical protein SDJN03_20399, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607453.1	1.26e-04	72.97	hypothetical protein SDJN03_00795, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g170620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g170620 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g170620.m01	Csor.00g170620.m01	mRNA