Csor.00g170450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g170450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 6063248 .. 6065687 (+)
RNA-Seq ExpressionCsor.00g170450
SyntenyCsor.00g170450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTTCGTCCGAGGTTACTGTTCCAGAAGAAATAGGGGAAATCCAGGGAAGGGGCGAAGCCATGAGACCTTGTTCAATCCGGGAAGGTAGAGATTCAGGGGCAGGTAAGGAGCTCAATCAGGTTCCGGTTCAAGAGCCTACAGTTTCCCTTCTTTCAAACACTGTAAACTCAGTAGCTCAGGGTTTCGGTTTCTTCTTCTTTTACTGTAAAAAAGGTAAAGGAGCGAAGGAAGCTGTGGACCAATAGTTTATGAGGGAGAAGAGTGAAGCCGCTCGACCGATAGGGAGAGGAGTTCAGGATCATGAATCTCTTTTCTTTTACCGACGGTAAGGGATAGGAAAAGGTTTAAGGTTTCGGCTTAGTTTACAGTTCGTGAAAGAATAACTCACAATAAGGGAATATCGTCAAAGAGTGAAAGAAGGGAATGAGGTCAGATCAGTAGCTTTACCCAGTTCGATGAAAGAAGGGACAGGCAATGGAATTAATTGTTCAACCGATCGACAGGTGAATGAGTTTACAAGCAAGAGAGTCAAGTCAATTCAGTCCTCAGCAGCTTTACCCAGTGAATGAAGAAATAGGTTCAAGGGCAGTAGTGAAAAGGAGTAAGGAGTCTTGCTTACAGGCAGGAGAGGAGTGAAATCAAACACCTATTCCATTTACCGAGGGAAAGAGTGAAATCAGGGAAGGGAAGTAGTTAAGGAATTTACCTCGTTCAAGAATAAATAGGTTCAGTAGCTCAGCCGAGGAAAGGGTTTCTTCCTCTTTTCTTACATTCTCGTCAGGTTTCGGTGAAGTAGCTCATGAATTGACTCTCCTGTAAAGTGAAGGCAAGGTCATATCGGTTCCGGAGCGAAGCTGCTTTACCTCCTTCAATCAGAATAGTTCAGGAGTTTACCGAGTTCAGTAGTTCAGTCGAATTAACTTCTTCTTTTACAGCTCAATCTGGTTCCGGTGAAGGAGGGAGAAGGAATCTTTTGGCTTTGTTTACTGTTCGTTCAATATGCTGGTTCAGGAGAAGATCAAGAATGAATCTTTCGGCTTTCCCTTGTTCAATCTGGCTGGGAGTTCAGTCTCTCTCATTCATCTTTCTTACAGGAGAGGAAAAGAAAGAGTGAAGGTTCGTGAAGTAGTTCCGTAGAGAAGCTAATAGTTTAGAGGTTCAATAGTGATTGCGTTTACCTCGGTCAAACAGTCAAAGGATCAAGAACCGAACAAACACCTATTTACCTTGTGTTTGAGTGAAAGAAAAGGTCTAAGGTTCTGTCTTTGTTTACTGTTCAAGAATCCAGAGGTGAAAGAAGGTTTAGAATCAAATGAAAGAATAAATAGGGAGAGGAGTGAAACAAGCAAGAAAGTAAATATTCAATCCTCAGCTGCTTTACCTCGTTAAAGAAGAAATAGGTTCAGGTTCAGTTAATCTTTCTTCTTCTTTTACAGTTTAATCCGGGACAGGTTTAGGAGTGAAAGAAGGAAAAGGTTTGAGGTTTCTTCTTCTTCAGCCCTTGCTGCTCAGTCTCATTAATCTTTCATTTTCTTCTTAATTCCTTCTGTAAAGGCTATTAGGATAGGTTACGGAGCTGGAGTTCAGTAGCTAAGCTAAGGATCATGAATCGGAGCGCAGACGAGGGGCAGGGTTTCTGTTTCGACTTTCCCTTGTGTTTGTTTGAATAAATAGGTGCAGGAGTGATTGATCCCAATACGGAGAGGAGAAAGGATTTCATTCATTTAGCTTTACCGATGTTCCATCTGTCGAATGATTGAGTCTTGAGTTGATGAGTGTTTACTGATCCGGTTAGGTAATACAAAATAGAGGAAAAGAAGAAGCCACGAGACCGAGGGAAAGAAGGTTTAGGTTCCTTCTACTAGTTTTCGCTTGAATTGGCTCTCCTGTAAAGTGAAGGTCATGGAGGTTCTGGTTTCGGAGCTCAGCCTATTTACCTCTTGAAATAAGGTAAGGTTATAGAGGTTCAGGTTTAATGTTTCGGCTTCGGCTTGATCTTTTTCTTTTACCGACTGTAAAGGACAGTCAAATTGCTTGACCCAATCTTTGCTTGAAGGAAAAGGGTGTCGGTTGAGGAACGAAGTGCTCGACCGAAAGGGAGAGGATCATTAATAAGGAAAGGAGGATTGACTTAAGAATTACCTTTTGTTTGAGTGAAAGAAAGTGATTGAAGTAGTTCAGGAGAATGATGCTTTCGTTGAGTCTTAATTTCTTACAGGGAAATCTGGTTCAGGAGTTCATCATCATTAATAGGAGTATAAGTATGGGGAGGAGTGAAAGAAAGAAGGAAGAAGACAGTTACCCGAGTTTACTGTTAGTGTTTGAAGGGAAAGAACAATCACTAATATCGGTTCAGGTCCTGAAAATAGCGCTTTACCTAGCCTAGTAAAAGAGTTAAAGAAGGAAAAGGTTCAGGGTCAGACTCAGTCCTGA

mRNA sequence

ATGAATCTTTCGTCCGAGGTTACTGTTCCAGAAGAAATAGGGGAAATCCAGGGAAGGGGCGAAGCCATGAGACCTTGTTCAATCCGGGAAGGTAGAGATTCAGGGGCAGGTAAGGAGCTCAATCAGGTTCCGGTTCAAGAGCCTACAGTTTCCCTTCTTTCAAACACTGTAAACTCAGTAGCTCAGGGTTTCGGTTTCTTCTTCTTTTACTGTAAAAAAGGTCCTGAAAATAGCGCTTTACCTAGCCTAGTAAAAGAGTTAAAGAAGGAAAAGGTTCAGGGTCAGACTCAGTCCTGA

Coding sequence (CDS)

ATGAATCTTTCGTCCGAGGTTACTGTTCCAGAAGAAATAGGGGAAATCCAGGGAAGGGGCGAAGCCATGAGACCTTGTTCAATCCGGGAAGGTAGAGATTCAGGGGCAGGTAAGGAGCTCAATCAGGTTCCGGTTCAAGAGCCTACAGTTTCCCTTCTTTCAAACACTGTAAACTCAGTAGCTCAGGGTTTCGGTTTCTTCTTCTTTTACTGTAAAAAAGGTCCTGAAAATAGCGCTTTACCTAGCCTAGTAAAAGAGTTAAAGAAGGAAAAGGTTCAGGGTCAGACTCAGTCCTGA

Protein sequence

MNLSSEVTVPEEIGEIQGRGEAMRPCSIREGRDSGAGKELNQVPVQEPTVSLLSNTVNSVAQGFGFFFFYCKKGPENSALPSLVKELKKEKVQGQTQS
Homology
[Close]
BLAST of Csor.00g170450 vs. NCBI nr
Match: KAG6585892.1 (hypothetical protein SDJN03_18625, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (494), Expect = 1.70e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MNLSSEVTVPEEIGEIQGRGEAMRPCSIREGRDSGAGKELNQVPVQEPTVSLLSNTVNSV 60
          MNLSSEVTVPEEIGEIQGRGEAMRPCSIREGRDSGAGKELNQVPVQEPTVSLLSNTVNSV
Sbjct: 1  MNLSSEVTVPEEIGEIQGRGEAMRPCSIREGRDSGAGKELNQVPVQEPTVSLLSNTVNSV 60

Query: 61 AQGFGFFFFYCKKGPENSALPSLVKELKKEKVQGQTQS 98
          AQGFGFFFFYCKKGPENSALPSLVKELKKEKVQGQTQS
Sbjct: 61 AQGFGFFFFYCKKGPENSALPSLVKELKKEKVQGQTQS 98

[Close]
BLAST of Csor.00g170450 vs. NCBI nr
Match: KAG6583684.1 (hypothetical protein SDJN03_19616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 2.48e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MNLSSEVTVPEEIGEIQGRGEAMRPCSIREGR 32
          MNLS+EVTV EEIGEI+GRGEAMRPCSIREG+
Sbjct: 1  MNLSAEVTVLEEIGEIRGRGEAMRPCSIREGK 32

The following BLAST results are available for this feature:
BLAST of Csor.00g170450 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g170450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585892.11.70e-62100.00hypothetical protein SDJN03_18625, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583684.12.48e-0987.50hypothetical protein SDJN03_19616, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g170450 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g170450 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g170450.m01Csor.00g170450.m01mRNA