Csor.00g170310 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g170310
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 5488130 .. 5489597 (+)
RNA-Seq ExpressionCsor.00g170310
SyntenyCsor.00g170310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGAGAATGGACGAAATGAACTGGGAATTGGTTCCATTTCAATGGATGGGGTTCAAGCAATGAAGGTGAAACCATGGATTTTAGAGATTTGGAACTGGAATTTGGAGGGATTTTGAAGCGAAGATGAAACGGAATTGAGATATTTTCTTCCTTTTTTTCTTTTTGTTGATTGGTTTCGGTGGAAATGGTGAGGATGAAGATGAGGCTGAGGATGAATTCTCTCTCCCGGGAGGAAATATTGTGGTGGTAGTGAAGAGTACGGCGTGTTTGAGAAATGGCAACCTGGCACCTATTTGTGGATCCTTGCATAATTAAAATATATATATTTTTTTAATCTAAACAAAATAAATAAATAAATAAATTGTTTTATTTTATTTAGAATTTGAAATAAAAAATTGTTTTATTGTTTTATTTAAAATAAAATAAAATAAAATAAATTGACGGTTATATAAGATCAAACCACGAAATAAATCTATTAGGAATAGTAATCTATGATTTCAAGATCACATTTTATTTAATTATATATATATATATATATATATATATATAAAATTAAATACTAATTTGAACGGTTAAACTATTAATTAAACAATTTTAATTAATCAGCTATAAATCACTCCTAAGCCATGGATAAGGAAGATGAACGTATAAACTAAAAATAAAAATAAAAATAAAAATAAAAATAAAAACCTTTTACCGTCGGTTTCCTCTTTCTCCCCGCTCCCTAACCATTCAACCTCTCTTCTTCATTTCTCTTCGATCTTCCTTCCCCTCTTCGGCGACAGACGCGGCGGCGCGACAGATCCGCGGCCGCAGCTCGAATATCTCCTCGTTTGCGAATCCACGCCAGATTTGCGACGGTGACACTCATATCTGCGACACTCACACCCTCGGTATTAGATCTGCAGTGGCAAACCTTTTCCAACTTAAACATAGTGTTTTACGCGGTAAATTGTCCTTTGATCAAGTTTCTTAAGGTATTTAGGTCAATTCAGTTTACAATTTGGTTTGATTAGCTTCTGAAACAGTCTGTCCATTTCAAGATTTTGGGTTCAGTTAGAATTTTGGTGCCTTAAAAATTCAGATTAATTGTGTTCTCACTTGTGAGTGAGGATTGTGTATTGTTTGTTCGATTTCTTACGACTTACTTGTTATTTGATCACTCATATAAACGTGGAGTTGTAGTGATATTTTTACATCGGTTTTTGCTCGTCTCTCTAAGTGTATTTTTTTTCCTGATCAAATTAGATTGTTTTCTGAAAGTTGTTATAATGATCTCTTTTTGTGCTTCCTTTGTCATCTTGTCGTACAAAATGTTTATTTCTTGTGATGCAATTTCTTTCAAAACCATGGACCTACAATCACGTTCTAATAAAACATGTTCGAGATGATTTGGAGGACGGAAAGTGGATAGAATTTAAGGGTTTTAACTTTTTTTTGTTGACGATTTTTCACCAGTAG

mRNA sequence

ATGGAGAAGGAGAATGGACGAAATGAACTGGGAATTGGTTCCATTTCAATGGATGGGGTTCAAGCAATGAAGACGCGGCGGCGCGACAGATCCGCGGCCGCAGCTCGAATATCTCCTCGTTTGCGAATCCACGCCAGATTTGCGACGGTGACACTCATATCTGCGACACTCACACCCTCGGTATTAGATCTGCAGTGGCAAACCTTTTCCAACTTAAACATAGTGTTTTACGCGTAG

Coding sequence (CDS)

ATGGAGAAGGAGAATGGACGAAATGAACTGGGAATTGGTTCCATTTCAATGGATGGGGTTCAAGCAATGAAGACGCGGCGGCGCGACAGATCCGCGGCCGCAGCTCGAATATCTCCTCGTTTGCGAATCCACGCCAGATTTGCGACGGTGACACTCATATCTGCGACACTCACACCCTCGGTATTAGATCTGCAGTGGCAAACCTTTTCCAACTTAAACATAGTGTTTTACGCGTAG

Protein sequence

MEKENGRNELGIGSISMDGVQAMKTRRRDRSAAAARISPRLRIHARFATVTLISATLTPSVLDLQWQTFSNLNIVFYA
Homology
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BLAST of Csor.00g170310 vs. NCBI nr
Match: KAG6588327.1 (hypothetical protein SDJN03_16892, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (378), Expect = 2.02e-45
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MEKENGRNELGIGSISMDGVQAMKTRRRDRSAAAARISPRLRIHARFATVTLISATLTPS 60
          MEKENGRNELGIGSISMDGVQAMKTRRRDRSAAAARISPRLRIHARFATVTLISATLTPS
Sbjct: 1  MEKENGRNELGIGSISMDGVQAMKTRRRDRSAAAARISPRLRIHARFATVTLISATLTPS 60

Query: 61 VLDLQWQTFSNLNIVFYA 78
          VLDLQWQTFSNLNIVFYA
Sbjct: 61 VLDLQWQTFSNLNIVFYA 78

The following BLAST results are available for this feature:
BLAST of Csor.00g170310 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g170310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588327.12.02e-45100.00hypothetical protein SDJN03_16892, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g170310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g170310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g170310.m01Csor.00g170310.m01mRNA