Csor.00g169220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g169220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 8993221 .. 8995769 (-)
RNA-Seq ExpressionCsor.00g169220
SyntenyCsor.00g169220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCGTCGTCCCCCTCGGAACCTCCTCTCTCTGTTCTCCTCCCTCCAAATCTCCCCGTCTCGTCTCCGGTAATCCACCGCGCCCACAATCGATTCTCAACTCTACTCTGAAAATTGATTTCCCCTCCTTTTCTTTTTGTCATCGTGGGGTTCATCAAATCCTCGGCGCCTGCGAGGAATCCGTTTCGCGTGGCGGGCGCATCTGGCCAAAGGTTCACATGGTAAGCGATTACTTCACTGGCGAGCATGACGGTCTTATTTTATCAATTTGTTAGGTTGGGAAGAGAGTCCCACGTTTGCTAATTTAGGAAATGATCATGGGTTTATAGGTAAGAAATATATCAATGGCATAAGACCCTGTGGGTAAACCCAAAGTAAAGTCATGCGAACTTATGCTCAAAGTAGACAATATTATACCATTGTAGAGAGTGGTTATTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTCAGTAGAATTCTCAAATTTTGAACAAATAAGTTGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTGAAGTGTTGAACAAAGGGCGTACTTTGTTCAAGGTTCAAGGACTCCAGAAGAGTCGAACCTCATTTAAGGAGAGTTTATTTGAGGGCTCTATAGCCCTCAGGGGAGTCTCTATAGTATACTTTGTTAGAGGGGAGAATTGTTAGGAAAGAGTCCACGTTGGCTAATTTAGTAAATGATCATAGGTCTATAAGTAGTCGTTATTCCTAACTTCCACCTAATTGAGAATTGTCATGGAAATTTGGTTCATGAATTTTATTATTATTATTATTATTTTTACCTTTTGCTTCGATTCATGAATATATTAGTTTATCTCCCATATTGATACGTTTAAAAAAAGGTAAGAAATATACAAGTACGTCACGTGATTACATTGAAGGAGAGATTTTTTAACGTAATATGATAGCTAAATCTTTCACTCGACGATGGGAGAGCAATGCTTGCTTGTATGATCGTATTTGATGAATTGTCATTCTAAGTTCGAGCGAAGGATTTCATAAATGTTTGAAAAGGTATTTCCATCACGGTCAAAATTGCAAAAAATTGTTGTCAATTGTACTTGACGAAGAGAAAGAGTGTCATAATTGGAAGGAGTCGAGGAGTTTAATTAAGGACTTTGTTCTAGTTCGAACTAACGGTGGTAAGGAATCAACCCAAAGGAAAACTCTCATATCATATAATAAGTAATCACTACAAAGGAAGTAAAATTTAGATTACTTTGTTCATCGAATATCTCAAGGAAAAACACTTATTTGAGATCTGAATCACTCCACAAACAAGATCGATCATGTTTAGCTTGAAAGATTCTAAACATGCAATCTAAACTAAATAGAATTGCAAAGAAGTTGAACACTTAGCCTTAATGATAAGGAATCACTCCAATGAAAAAGTAAAATCCATATGAAATTGTTGATCGGGTATCTCAAGGCAAGAACATTTGATTGGGACTTGAATCATTTTACAACCAAGATTGATCATGTTAAGCTTGAATGATTCTAAACATGTAATCTAAATTACATAGAATTGCAAATACTATTAGTGAAAAGAAATCACAAATACTCATTTTACTGCATTTTTAAGTCTCTCTTATATGACATACATGACTTTATGTAGCCTCAAAATGAAAACTCTTAACCTTCCGTGAGATTTCAAGAGTTGTAACTTTCATAATCTACTAAGTAAATTTAATTAGCCACTATGTAAATTTAATTTAAAGTAAATAAAAGTCTTAAAATACATAAAAGAACACTACGACTCTAGATTATCATCCACTCAAAATTTGTGCCTATGAACGTAAAACCTCGGAAAAAGATAAATTTAAATTAAAAATAAAATTAATCATAAAAATAAATATATTAAACCAAAGACGATGACAACATTGACAACAAGTTTGACGAGGAAGTGAGGAAAATGGAAGGAAAATTGGCAAGGCGTGTTGCCTATAGTTGTGTGTTAGATGTCTTGGACATGTTTGTCCAAGGCATGTTGCCTGTAGTCGCATGTTGCATCTGTGTCCCTTTTACTTGTTTTCATGTGTAGTTTGGTCTTTACTATCCTTGTCATGTCAACACAGGGATGTTTGACCGTTCATCAAATTTATGTCTATACTTCCTAATACTAAAATGACACAAAATGTACTGATGTGACAAGGAGTAAGTAAACATGTTCCAAGGGATGCACGGAAATGTTGGAACCGAAAATAGAAAAGGAAGTAGTGAGAGATTTCTACTCGTTAGATAAATAGGATTGGGGATGGAAACTGTATTATTGTCACTTGAGTTTGTTGGACAAAACAATGAACTGTCCAGAGAAGCTTGTCATCATTGGAATGGCGCCAACAGAGGAGCTTATCGCCATTGGAATGGCGCCAACAGAACCATGGATTTCCGATTCAACTGTCCAGATATGCCTGACGACATACACGTTCTTTCCAAGCCTAAATCAATCCCCACGCGTCCTTCACGTTTCTCGAGGCTTCAAATGGCTTCAACAAAATCCCATTTGA

mRNA sequence

ATGCCCACCGTCGTCCCCCTCGGAACCTCCTCTCTCTGTTCTCCTCCCTCCAAATCTCCCCGTCTCGTCTCCGGTAATCCACCGCGCCCACAATCGATTCTCAACTCTACTCTGAAAATTGATTTCCCCTCCTTTTCTTTTTGTCATCGTGGGGTTCATCAAATCCTCGGCGCCTGCGAGGAATCCGTTTCGCGTGGCGGGCGCATCTGGCCAAAGGTTCACATGGTAAGCGATTACTTCACTGGCGAGCATGACGAGAAGCTTGTCATCATTGGAATGGCGCCAACAGAGGAGCTTATCGCCATTGGAATGGCGCCAACAGAACCATGGATTTCCGATTCAACTGTCCAGATATGCCTGACGACATACACGTTCTTTCCAAGCCTAAATCAATCCCCACGCGTCCTTCACGTTTCTCGAGGCTTCAAATGGCTTCAACAAAATCCCATTTGA

Coding sequence (CDS)

ATGCCCACCGTCGTCCCCCTCGGAACCTCCTCTCTCTGTTCTCCTCCCTCCAAATCTCCCCGTCTCGTCTCCGGTAATCCACCGCGCCCACAATCGATTCTCAACTCTACTCTGAAAATTGATTTCCCCTCCTTTTCTTTTTGTCATCGTGGGGTTCATCAAATCCTCGGCGCCTGCGAGGAATCCGTTTCGCGTGGCGGGCGCATCTGGCCAAAGGTTCACATGGTAAGCGATTACTTCACTGGCGAGCATGACGAGAAGCTTGTCATCATTGGAATGGCGCCAACAGAGGAGCTTATCGCCATTGGAATGGCGCCAACAGAACCATGGATTTCCGATTCAACTGTCCAGATATGCCTGACGACATACACGTTCTTTCCAAGCCTAAATCAATCCCCACGCGTCCTTCACGTTTCTCGAGGCTTCAAATGGCTTCAACAAAATCCCATTTGA

Protein sequence

MPTVVPLGTSSLCSPPSKSPRLVSGNPPRPQSILNSTLKIDFPSFSFCHRGVHQILGACEESVSRGGRIWPKVHMVSDYFTGEHDEKLVIIGMAPTEELIAIGMAPTEPWISDSTVQICLTTYTFFPSLNQSPRVLHVSRGFKWLQQNPI
Homology
[Close]
BLAST of Csor.00g169220 vs. NCBI nr
Match: KAG6573636.1 (hypothetical protein SDJN03_27523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313 bits (801), Expect = 1.19e-107
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MPTVVPLGTSSLCSPPSKSPRLVSGNPPRPQSILNSTLKIDFPSFSFCHRGVHQILGACE 60
           MPTVVPLGTSSLCSPPSKSPRLVSGNPPRPQSILNSTLKIDFPSFSFCHRGVHQILGACE
Sbjct: 1   MPTVVPLGTSSLCSPPSKSPRLVSGNPPRPQSILNSTLKIDFPSFSFCHRGVHQILGACE 60

Query: 61  ESVSRGGRIWPKVHMVSDYFTGEHDEKLVIIGMAPTEELIAIGMAPTEPWISDSTVQICL 120
           ESVSRGGRIWPKVHMVSDYFTGEHDEKLVIIGMAPTEELIAIGMAPTEPWISDSTVQICL
Sbjct: 61  ESVSRGGRIWPKVHMVSDYFTGEHDEKLVIIGMAPTEELIAIGMAPTEPWISDSTVQICL 120

Query: 121 TTYTFFPSLNQSPRVLHVSRGFKWLQQNPI 150
           TTYTFFPSLNQSPRVLHVSRGFKWLQQNPI
Sbjct: 121 TTYTFFPSLNQSPRVLHVSRGFKWLQQNPI 150

[Close]
BLAST of Csor.00g169220 vs. NCBI nr
Match: KAE8652816.1 (hypothetical protein Csa_022858, partial [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 4.83e-11
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 95  PTEELIAIGMAPTEPWISDSTVQICLTTYTFFPSLNQSPRVLHVSRGF----KWLQQNP 149
           PT++L+AI MAPTEP ISD TVQICLTTYTFFP  N +P   H S  F    K L Q P
Sbjct: 39  PTQKLVAIAMAPTEPSISDQTVQICLTTYTFFPPPNSTP---HASSTFFNPSKCLNQIP 94

[Close]
BLAST of Csor.00g169220 vs. ExPASy TrEMBL
Match: A0A0A0LSS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168860 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.89e-10
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 95  PTEELIAIGMAPTEPWISDSTVQICLTTYTFFPSLNQSP 133
           PT++L+AI MAPTEP ISD TVQICLTTYTFF  L Q P
Sbjct: 39  PTQKLVAIAMAPTEPSISDQTVQICLTTYTFFRRLIQPP 77

The following BLAST results are available for this feature:
BLAST of Csor.00g169220 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g169220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573636.11.19e-107100.00hypothetical protein SDJN03_27523, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652816.14.83e-1161.02hypothetical protein Csa_022858, partial [Cucumis sativus][more]
BLAST of Csor.00g169220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSS39.89e-1074.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168860 PE=4 SV=1[more]
BLAST of Csor.00g169220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g169220.m01Csor.00g169220.m01mRNA