Csor.00g168980 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g168980
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pectin lyase-like superfamily protein
Location	Csor_Chr18: 8683310 .. 8684668 (+)
RNA-Seq Expression	Csor.00g168980
Synteny	Csor.00g168980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACACCTCTCACTGTGAGTTGTTTCCTCTTTCTCAACTCCAACACTTTGTAAAATTCACACCAATTCCTACTAATTTCTTCAATTTGATGGTCTGAGGTTTTGATTTTGAGCTACATTTTGGCTAAACCCCAAAATCCCGATTAATGTTGAATGCCTAGCGCAATTCTCTCTCCATTGTGGCTGTTGCTACCTTAATCTTAGGTTTTCTTACATTATTCGTAAAATTGGGGCTAGTGGACGGCAAATTTTCTGATTCCCGTTTTCCTATTATGATTTATTTAATTGAAGTTCTGCAAGCTCAAACCAATTACTTTTACTTGATCGCCTCACTTCGATCTATCTTGATTGATATTCAGCTGTTTTTCTTTGCACCTTTGTAGAAGAAGATCCCTCTGGTAACTTTGTTCCTTGTTCATTGTTAGAGCAGGAAGAACAATGTTAATTGCGGAACTAAGCCAGATGATGCACTTGATCCTTTCCCTTTTGATACTTTTAACAATAGTGGCTTTATTCTTTCAGCTGGTGGATGTTCTTCTGTTGCTTGCATTGTTTTGTATTTCTCCATGGGTTGCTGGGAGTAGCAGCTCTTATTGCAAGCTGACTAATACAGGAGAAATTCGACCCCACAGTGTCTCTATCACTGATTTTGGGGCAGTTGGAGATGGTGTCACTCTCAACACAAAAGCATTCCAAAATGCTATTTTCTACCTCAACTCTTTTGCCGACAAGGGTGGTGCCAAGCTTTTTGTCCCAGCTGGGCGTTGGTTGACAGGAAGCTTCGATCTTATCAGTCATTTAACTTTGTGGTTAGATAAGGATGCTGTGATTCTTGGCTCAACGGTAAGCTCTTGCTTCTTGGTTGAATAAAAGTGTCTACCAAGCAAAGTTTTGAGTTAACTGGTTGTTAGTACACCAAAATTCTCCCCTTGCAAGTGCTTTTTTAATGAATTTGAGCTGATTTTCAATCAGATTAAAGTACAAGATGTAGTGGCATTGTATTGTTCATCAAAATTCTCCCCTTGAAGGTGCATTTTTAATGGATTTTAGCTGATTTTCAATCAGATTGAAGTACAAGATGTTGTGGCATTGTATTGTACACCAAAATTCTCCCCTTGAAAGTGCATTTTTAATGAATTTGAGCTGATTTTTAATCAGATTAAAGTACAAAATGTAGTGGCATTGTATTGTCTAATGATGAATGTTTTGTAATTTTTTCAGATCTCTGATGACTGGCCGATTATCAAACCACTGCCATCATATGGTAGAGGACGCGAGTTGCCAGGTGAACGGCATCGTAGCCTCATCTATGGATGCAATTTGACGAATGTTGTCATCACAGGTAGCCCATATTGA

mRNA sequence

ATGAAGACACCTCTCACTCTGGTGGATGTTCTTCTGTTGCTTGCATTGTTTTGTATTTCTCCATGGGTTGCTGGGAGTAGCAGCTCTTATTGCAAGCTGACTAATACAGGAGAAATTCGACCCCACAGTGTCTCTATCACTGATTTTGGGGCAGTTGGAGATGGTGTCACTCTCAACACAAAAGCATTCCAAAATGCTATTTTCTACCTCAACTCTTTTGCCGACAAGGGTGGTGCCAAGCTTTTTGTCCCAGCTGGGCGTTGGTTGACAGGAAGCTTCGATCTTATCAGTCATTTAACTTTGTGGTTAGATAAGGATGCTGTGATTCTTGGCTCAACGATCTCTGATGACTGGCCGATTATCAAACCACTGCCATCATATGGTAGAGGACGCGAGTTGCCAGGTGAACGGCATCGTAGCCTCATCTATGGATGCAATTTGACGAATGTTGTCATCACAGGTAGCCCATATTGA

Coding sequence (CDS)

ATGAAGACACCTCTCACTCTGGTGGATGTTCTTCTGTTGCTTGCATTGTTTTGTATTTCTCCATGGGTTGCTGGGAGTAGCAGCTCTTATTGCAAGCTGACTAATACAGGAGAAATTCGACCCCACAGTGTCTCTATCACTGATTTTGGGGCAGTTGGAGATGGTGTCACTCTCAACACAAAAGCATTCCAAAATGCTATTTTCTACCTCAACTCTTTTGCCGACAAGGGTGGTGCCAAGCTTTTTGTCCCAGCTGGGCGTTGGTTGACAGGAAGCTTCGATCTTATCAGTCATTTAACTTTGTGGTTAGATAAGGATGCTGTGATTCTTGGCTCAACGATCTCTGATGACTGGCCGATTATCAAACCACTGCCATCATATGGTAGAGGACGCGAGTTGCCAGGTGAACGGCATCGTAGCCTCATCTATGGATGCAATTTGACGAATGTTGTCATCACAGGTAGCCCATATTGA

Protein sequence

MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPIIKPLPSYGRGRELPGERHRSLIYGCNLTNVVITGSPY

Homology

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BLAST of Csor.00g168980 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.1e-38
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 40  RPHSVSITDFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHL 99
           R HS S+ DFG VGDG TLNTKAFQ+A+  L+ +  +GGA+L+VPAG+WLTGSF L SH 
Sbjct: 59  RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118

Query: 100 TLWLDKDAVILGSTISDDWPIIKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 155
           TL+L +DAV+L S     WP+IKPLPSYGRGR+    R+ SLI+G NLT+V+ITG
Sbjct: 119 TLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITG 173

[Close]

BLAST of Csor.00g168980 vs. ExPASy Swiss-Prot
Match: P15922 (Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 33  LTNTGEIRPHSVSITDFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGS 92
           +T T    P  ++IT +GA GDG TLNT A Q AI      A   G ++ VPAG + TG+
Sbjct: 141 VTTTTTAVPKVINITQYGAKGDGTTLNTSAIQKAI-----DACPTGCRIDVPAGVFKTGA 200

Query: 93  FDLISHLTLWLDKDAVILGSTISDDWPIIKPLPSY 128
             L S +TL L + A +LGS  + D+P    + SY
Sbjct: 201 LWLKSDMTLNLLQGATLLGSDNAADYPDAYKIYSY 230

[Close]

BLAST of Csor.00g168980 vs. NCBI nr
Match: KAG6573613.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324 bits (830), Expect = 7.66e-112
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITGSPY 157
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITGSPY
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITGSPY 157

[Close]

BLAST of Csor.00g168980 vs. NCBI nr
Match: XP_023542119.1 (probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317 bits (811), Expect = 1.22e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. NCBI nr
Match: XP_022967082.1 (probable polygalacturonase isoform X2 [Cucurbita maxima])

HSP 1 Score: 317 bits (811), Expect = 1.22e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. NCBI nr
Match: XP_022945524.1 (probable polygalacturonase isoform X2 [Cucurbita moschata])

HSP 1 Score: 317 bits (811), Expect = 1.22e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. NCBI nr
Match: XP_022967081.1 (probable polygalacturonase isoform X1 [Cucurbita maxima])

HSP 1 Score: 317 bits (811), Expect = 2.15e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. ExPASy TrEMBL
Match: A0A6J1HPS3 (probable polygalacturonase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466589 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 5.90e-105
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. ExPASy TrEMBL
Match: A0A6J1G174 (probable polygalacturonase isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449733 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 5.90e-105
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. ExPASy TrEMBL
Match: A0A6J1HR20 (probable polygalacturonase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466589 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 1.04e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. ExPASy TrEMBL
Match: A0A6J1G153 (probable polygalacturonase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449733 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 1.04e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT
Sbjct: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG
Sbjct: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154

[Close]

BLAST of Csor.00g168980 vs. ExPASy TrEMBL
Match: A0A6J1DDC5 (probable polygalacturonase isoform X3 OS=Momordica charantia OX=3673 GN=LOC111019738 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 1.16e-90
Identity = 135/154 (87.66%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MKTP TLVDVLLLLALFC++P +A SSS +CKL N  EIRPHSVSITDFGAVGDG+TLNT
Sbjct: 1   MKTPFTLVDVLLLLALFCLAPRIARSSS-FCKLINVAEIRPHSVSITDFGAVGDGITLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
           KAFQNAIFYLNSFADKGGAKL VPAGRWLTGSFDLISHLTLWLDKDAVILGSTIS+DWP+
Sbjct: 61  KAFQNAIFYLNSFADKGGAKLLVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISNDWPV 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 154
           +KPLPSYGRGRELPG+RHRSLIYGCNLT+V+ITG
Sbjct: 121 VKPLPSYGRGRELPGKRHRSLIYGCNLTDVIITG 153

[Close]

BLAST of Csor.00g168980 vs. TAIR 10
Match: AT3G62110.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 227.6 bits (579), Expect = 6.8e-60
Identity = 111/155 (71.61%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEI-RPHSVSITDFGAVGDGVTLN 60
           MK    L+ VLL+ A +    W +   S +C+ +N   + RPHSVSIT+FGAVGDGVTLN
Sbjct: 1   MKRSFLLLYVLLVQAFY--GAWCSVGESLHCEYSNLASLHRPHSVSITEFGAVGDGVTLN 60

Query: 61  TKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWP 120
           TKAFQNA+FYLNSF+DKGGAKLFVPAG+WLTGSFDLISHLTLWLDK A ILGST S++WP
Sbjct: 61  TKAFQNALFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTSSENWP 120

Query: 121 IIKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 155
           ++ PLPSYGRGRELPG RHRSLIYG NLT+VVITG
Sbjct: 121 VVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITG 153

[Close]

BLAST of Csor.00g168980 vs. TAIR 10
Match: AT3G16850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-44
Identity = 93/154 (60.39%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           MK P+ LV  LL   +  IS      +++ CK     + RPHSVSI +FGAVGDG TLNT
Sbjct: 1   MKMPVALV-WLLAFTILLIS---GEGNNAICKENFKLDPRPHSVSILEFGAVGDGKTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
            AFQNA+FYL SFADKGGA+L+VP G+WLTGSF+L SHLTL+L+K A IL S     W +
Sbjct: 61  IAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDV 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 155
           + PLPSYGRG ELPG+R+RSLI G NL +VVITG
Sbjct: 121 VSPLPSYGRGIELPGKRYRSLINGDNLIDVVITG 150

[Close]

BLAST of Csor.00g168980 vs. TAIR 10
Match: AT5G49215.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-42
Identity = 89/151 (58.94%), Postives = 107/151 (70.86%), Query Frame = 0


Query: 4   PLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNTKAF 63
           P+ LV +L L ++  I+    G   + C        RPHSV ITDFGAVGDG TLNT AF
Sbjct: 2   PVALVLLLTLSSVILINGRSYG-VGNICDRGRRPSERPHSVKITDFGAVGDGKTLNTLAF 61

Query: 64  QNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPIIKP 123
           QNA+FYL SFADKGGA+L+VP GRWLTGSF+L SHLTL+L+KDAVIL S     W +   
Sbjct: 62  QNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQVTDA 121

Query: 124 LPSYGRGRELPGERHRSLIYGCNLTNVVITG 155
           LPSYGRG +LPG+R+ SLI G  L +VV+TG
Sbjct: 122 LPSYGRGIDLPGKRYMSLINGDMLHDVVVTG 151

[Close]

BLAST of Csor.00g168980 vs. TAIR 10
Match: AT3G06770.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.9e-42
Identity = 87/151 (57.62%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 8   VDVLLLLALFCISPWVAG--SSSSYCKLTNTGEI--RPHSVSITDFGAVGDGVTLNTKAF 67
           V  +L+LAL  + P  A    +   C       +  RPHSVSITDFGAVGDG TLNT AF
Sbjct: 3   VVTILILALTSVIPIYANVHGAGKICDELGRRSLSTRPHSVSITDFGAVGDGKTLNTLAF 62

Query: 68  QNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPIIKP 127
           QNA+FYL SFADKGGA+L+VP G WLTGSF L SHLTL+L+  AVI+ S     W ++ P
Sbjct: 63  QNAVFYLMSFADKGGAQLYVPPGHWLTGSFSLTSHLTLFLENGAVIVASQDPSHWEVVDP 122

Query: 128 LPSYGRGRELPGERHRSLIYGCNLTNVVITG 155
           LPSYGRG +LPG+R++SLI G  L +VV+TG
Sbjct: 123 LPSYGRGIDLPGKRYKSLINGNKLHDVVVTG 153

[Close]

BLAST of Csor.00g168980 vs. TAIR 10
Match: AT5G49215.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 8.3e-42
Identity = 89/154 (57.79%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 1   MKTPLTLVDVLLLLALFCISPWVAGSSSSYCKLTNTGEIRPHSVSITDFGAVGDGVTLNT 60
           M   + LV +L L ++  I+    G   + C        RPHSV ITDFGAVGDG TLNT
Sbjct: 1   MPVSVALVLLLTLSSVILINGRSYG-VGNICDRGRRPSERPHSVKITDFGAVGDGKTLNT 60

Query: 61  KAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTISDDWPI 120
            AFQNA+FYL SFADKGGA+L+VP GRWLTGSF+L SHLTL+L+KDAVIL S     W +
Sbjct: 61  LAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQV 120

Query: 121 IKPLPSYGRGRELPGERHRSLIYGCNLTNVVITG 155
              LPSYGRG +LPG+R+ SLI G  L +VV+TG
Sbjct: 121 TDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTG 153

The following BLAST results are available for this feature:

BLAST of Csor.00g168980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	7.1e-38	61.74	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
P15922	6.9e-09	41.05	Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 S...	[more]

BLAST of Csor.00g168980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573613.1	7.66e-112	100.00	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023542119.1	1.22e-104	100.00	probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022967082.1	1.22e-104	100.00	probable polygalacturonase isoform X2 [Cucurbita maxima]	[more]
XP_022945524.1	1.22e-104	100.00	probable polygalacturonase isoform X2 [Cucurbita moschata]	[more]
XP_022967081.1	2.15e-104	100.00	probable polygalacturonase isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g168980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPS3	5.90e-105	100.00	probable polygalacturonase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11146658...	[more]
A0A6J1G174	5.90e-105	100.00	probable polygalacturonase isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449...	[more]
A0A6J1HR20	1.04e-104	100.00	probable polygalacturonase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11146658...	[more]
A0A6J1G153	1.04e-104	100.00	probable polygalacturonase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449...	[more]
A0A6J1DDC5	1.16e-90	87.66	probable polygalacturonase isoform X3 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of Csor.00g168980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62110.1	6.8e-60	71.61	Pectin lyase-like superfamily protein	[more]
AT3G16850.1	1.8e-44	60.39	Pectin lyase-like superfamily protein	[more]
AT5G49215.2	2.9e-42	58.94	Pectin lyase-like superfamily protein	[more]
AT3G06770.2	4.9e-42	57.62	Pectin lyase-like superfamily protein	[more]
AT5G49215.1	8.3e-42	57.79	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024535	Pectate lyase superfamily protein	PFAM	PF12708	Pectate_lyase_3	coord: 44..90 e-value: 5.6E-8 score: 32.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 39..156 e-value: 5.2E-33 score: 116.6
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 7..155
None	No IPR available	PANTHER	PTHR31339:SF20	OS07G0245200 PROTEIN	coord: 7..155
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 11..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g168980.m01	Csor.00g168980.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0047911	galacturan 1,4-alpha-galacturonidase activity
molecular_function	GO:0004650	polygalacturonase activity