Csor.00g168830 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g168830
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	U5 small nuclear ribonucleoprotein 40 kDa protein
Location	Csor_Chr18: 8471508 .. 8472542 (-)
RNA-Seq Expression	Csor.00g168830
Synteny	Csor.00g168830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCCGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGTGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCGCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACACTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCGTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTACGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCAAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAGATTTAA

mRNA sequence

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCCGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGTGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCGCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACACTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCGTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTACGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCAAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAGATTTAA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCCGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGTGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCGCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACACTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCGTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTACGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCAAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAGATTTAA

Protein sequence

MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI

Homology

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BLAST of Csor.00g168830 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 5.8e-125
Identity = 192/309 (62.14%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

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BLAST of Csor.00g168830 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 9.8e-125
Identity = 190/309 (61.49%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRR+LYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of Csor.00g168830 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-124
Identity = 191/309 (61.81%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of Csor.00g168830 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 5.4e-123
Identity = 190/309 (61.49%), Postives = 248/309 (80.26%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           +  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR V VWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]

BLAST of Csor.00g168830 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.3e-112
Identity = 179/310 (57.74%), Postives = 231/310 (74.52%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G +RTS LE PIM L GH+  IY+ KFN  G+ +ASG  DKEIFLWNV+G+C NY VL+G
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           HK  +L+LHW+TD ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCS 335
           NL+K SWS DG ++  GSSDR VY+WDT ++++ Y LPGH+G+VNE  FHP+EPI+ SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

Query: 336 SDKQIYLGEI 345
           SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353

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BLAST of Csor.00g168830 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 727 bits (1877), Expect = 3.27e-265
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. NCBI nr
Match: XP_023542336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 726 bits (1873), Expect = 1.33e-264
Identity = 343/344 (99.71%), Postives = 344/344 (100.00%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVM+TLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMITLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 725 bits (1872), Expect = 1.89e-264
Identity = 343/344 (99.71%), Postives = 343/344 (99.71%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 708 bits (1827), Expect = 1.38e-257
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. NCBI nr
Match: XP_022151978.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Momordica charantia])

HSP 1 Score: 703 bits (1815), Expect = 9.65e-256
Identity = 332/342 (97.08%), Postives = 336/342 (98.25%), Query Frame = 0


Query: 3   VPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKF 62
           VPS G NALATVGPRPMEWSTVPY+APQGPGPNGKQRTSSLES IMLLTGHQSAIYTLKF
Sbjct: 4   VPSEGGNALATVGPRPMEWSTVPYSAPQGPGPNGKQRTSSLESSIMLLTGHQSAIYTLKF 63

Query: 63  NPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLR 122
           NPAG VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDG QIV+ASPDKTLR
Sbjct: 64  NPAGDVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGFQIVTASPDKTLR 123

Query: 123 AWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY 182
           AWDVETGKQ+KKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY
Sbjct: 124 AWDVETGKQVKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY 183

Query: 183 QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG 242
           QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG
Sbjct: 184 QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG 243

Query: 243 MDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 302
           MDCKLCIWDMRPYAPQNRCVKI EGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT
Sbjct: 244 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 303

Query: 303 TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 304 TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345

[Close]

BLAST of Csor.00g168830 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 727 bits (1877), Expect = 1.58e-265
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 725 bits (1872), Expect = 9.17e-265
Identity = 343/344 (99.71%), Postives = 343/344 (99.71%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 708 bits (1827), Expect = 6.66e-258
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 708 bits (1827), Expect = 6.66e-258
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Csor.00g168830 vs. ExPASy TrEMBL
Match: A0A6J1DDM1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Momordica charantia OX=3673 GN=LOC111019808 PE=4 SV=1)

HSP 1 Score: 703 bits (1815), Expect = 4.67e-256
Identity = 332/342 (97.08%), Postives = 336/342 (98.25%), Query Frame = 0


Query: 3   VPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKF 62
           VPS G NALATVGPRPMEWSTVPY+APQGPGPNGKQRTSSLES IMLLTGHQSAIYTLKF
Sbjct: 4   VPSEGGNALATVGPRPMEWSTVPYSAPQGPGPNGKQRTSSLESSIMLLTGHQSAIYTLKF 63

Query: 63  NPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLR 122
           NPAG VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDG QIV+ASPDKTLR
Sbjct: 64  NPAGDVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGFQIVTASPDKTLR 123

Query: 123 AWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY 182
           AWDVETGKQ+KKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY
Sbjct: 124 AWDVETGKQVKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY 183

Query: 183 QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG 242
           QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG
Sbjct: 184 QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG 243

Query: 243 MDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 302
           MDCKLCIWDMRPYAPQNRCVKI EGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT
Sbjct: 244 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 303

Query: 303 TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
           TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 304 TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345

[Close]

BLAST of Csor.00g168830 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 660.2 bits (1702), Expect = 9.0e-190
Identity = 297/337 (88.13%), Postives = 322/337 (95.55%), Query Frame = 0


Query: 8   ENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGS 67
           EN  A  GPRPMEWSTVP++A QGPGPNGK RTSSLE+PIMLL+GH SA+YT+KFNPAG+
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVE 127
           +IASGSHD+EIFLW VHGDCKN+MVL+GHKNA+LDLHWT+DGSQIVSASPDKT+RAWDVE
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVE 126

Query: 128 TGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 187
           TGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 TGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD KL
Sbjct: 187 SFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRI 307
           C+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDG+KVTAGSSDRMV++WDTTSRR 
Sbjct: 247 CVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           +YKLPGHTGSVNECVFHP+EPI+GSCSSDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]

BLAST of Csor.00g168830 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 5.9e-40
Identity = 90/296 (30.41%), Postives = 154/296 (52.03%), Query Frame = 0


Query: 50  LTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVH----GDCKNYMVLRGHKNAVLDLHW 109
           LT H  A+ ++KF+  G ++AS S DK I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 TTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           ++D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSP 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQI 340
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E ++ S S DK +
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]

BLAST of Csor.00g168830 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 2.3e-28
Identity = 82/298 (27.52%), Postives = 131/298 (43.96%), Query Frame = 0


Query: 49  LLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGD--CKNYMVLRGHKNAVLDLHWT 108
           +L GH+ A+   +FN  G+   +   D+ I LWN H     K Y   + H   V D+H T
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTY---KSHGREVRDVHVT 72

Query: 109 TDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKL 168
           +D ++  S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++
Sbjct: 73  SDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRV 132

Query: 169 WDMRQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQG 228
           WD R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G
Sbjct: 133 WDCRSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLG 192

Query: 229 HQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSW 288
               +  + +S DG+ +L   +D  L + D          +++++GH     K    C  
Sbjct: 193 QP--VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCL 252

Query: 289 SPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQI 340
           +   + V  GS D +V+ WD    ++L K   H   V    +HP E  + + S D  I
Sbjct: 253 TNSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTI 294

[Close]

BLAST of Csor.00g168830 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-27
Identity = 84/301 (27.91%), Postives = 144/301 (47.84%), Query Frame = 0


Query: 50  LTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDG 109
           + GH  A+  + F+P G  +ASGS D  + LW+++ +   +   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 110 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 169
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 170 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 229
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 289
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK-----GD 344

Query: 290 SPDGSKVTAGSSDRMVYVWD-TTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIY 342
           SP+  ++ +GS D  +++W+ + S++   +L GH   VN   F P    + S S DK + 
Sbjct: 345 SPE--RLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVR 386

[Close]

BLAST of Csor.00g168830 vs. TAIR 10
Match: AT1G10580.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-25
Identity = 71/291 (24.40%), Postives = 131/291 (45.02%), Query Frame = 0


Query: 51  TGHQSAIYTLKFNP-AGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDG 110
           +GH   +  ++F P  G ++ S   D ++ +W+V+   K      GH  AV D+ ++ DG
Sbjct: 279 SGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDG 338

Query: 111 SQIVSASPDKTLRAWDVETGKQIKKMAEHS-SFVNSCCPTRRGPPLIVSGSDDGTAKLWD 170
           S+ ++A  DK ++ WD ETG+ I   +     +V    P      ++++G  D     WD
Sbjct: 339 SKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 398

Query: 171 MRQRGAIQTFPDKY-QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQDMI 230
           +      Q +      +  ++F D + +  T   D  ++VW+     V+  + + H   +
Sbjct: 399 INTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 458

Query: 231 TGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGS 290
             + + P+G++L    +D ++ I+  R     N+  K F G  H       + ++SPDG 
Sbjct: 459 PSISVHPNGNWLAAQSLDNQILIYSTRERFQLNK-KKRFAG--HIVAGYACQVNFSPDGR 518

Query: 291 KVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPI-VGSCSSD 337
            V +G  +   + WD  S ++   L  H G      +HP E   V +C  D
Sbjct: 519 FVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKVATCGWD 566

The following BLAST results are available for this feature:

BLAST of Csor.00g168830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96DI7	5.8e-125	62.14	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR...	[more]
Q6PE01	9.8e-125	61.49	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn...	[more]
Q2HJH6	1.3e-124	61.81	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP...	[more]
Q5RF51	5.4e-123	61.49	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR...	[more]
Q55AR8	3.3e-112	57.74	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX...	[more]

BLAST of Csor.00g168830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945717.1	3.27e-265	100.00	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735...	[more]
XP_023542336.1	1.33e-264	99.71	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo]	[more]
XP_022966914.1	1.89e-264	99.71	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima]	[more]
XP_008446018.1	1.38e-257	97.09	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA...	[more]
XP_022151978.1	9.65e-256	97.08	U5 small nuclear ribonucleoprotein 40 kDa protein [Momordica charantia]	[more]

BLAST of Csor.00g168830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Q0	1.58e-265	100.00	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HV60	9.17e-265	99.71	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7SYI1	6.66e-258	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BDK5	6.66e-258	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1DDM1	4.67e-256	97.08	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Momordica charantia OX=3673...	[more]

BLAST of Csor.00g168830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43770.1	9.0e-190	88.13	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	5.9e-40	30.41	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G64730.1	2.3e-28	27.52	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52820.1	4.4e-27	27.91	WD-40 repeat family protein / notchless protein, putative	[more]
AT1G10580.1	1.4e-25	24.40	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 155..169 score: 41.82 coord: 112..126 score: 37.9 coord: 69..83 score: 35.64
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 304..343 e-value: 0.0016 score: 27.7 coord: 43..82 e-value: 4.7E-8 score: 42.7 coord: 86..125 e-value: 5.2E-8 score: 42.6 coord: 258..301 e-value: 1.1E-6 score: 38.2 coord: 212..251 e-value: 1.6E-8 score: 44.3 coord: 128..168 e-value: 1.6E-7 score: 41.0 coord: 171..209 e-value: 3.2E-4 score: 30.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 90..125 e-value: 4.3E-4 score: 21.0 coord: 130..168 e-value: 4.1E-4 score: 21.1 coord: 46..82 e-value: 4.9E-6 score: 27.2 coord: 307..341 e-value: 0.063 score: 14.2 coord: 214..251 e-value: 7.2E-6 score: 26.6 coord: 184..209 e-value: 0.0089 score: 16.9 coord: 260..301 e-value: 2.4E-6 score: 28.1
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 184..218 score: 12.580379
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 219..253 score: 13.516088
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 135..177 score: 10.541869
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 311..344 score: 8.870959
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 93..134 score: 16.523727
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 280..310 score: 11.009724
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 50..83 score: 15.253835
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 42..344 e-value: 5.7E-122 score: 408.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 33..344
None	No IPR available	PANTHER	PTHR44006:SF1	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 33..344
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 311..344 score: 8.861059
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 177..214 score: 9.151057
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 219..253 score: 11.207411
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 50..83 score: 12.578312
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 93..130 score: 12.578312
None	No IPR available	CDD	cd00200	WD40	coord: 50..341 e-value: 2.59717E-73 score: 226.833
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 69..83
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 155..169
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 196..210
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 288..302
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 112..126
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 47..341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g168830.m01	Csor.00g168830.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005515	protein binding