Csor.00g168560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g168560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 9186071 .. 9186412 (-)
RNA-Seq Expression	Csor.00g168560
Synteny	Csor.00g168560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAAGATTGAGGAAATCAACATACGGATTCTTTGAAACTGAGCAATGGAATTTTCCGGCGTTCGCATTGCCAAAATCTAGGTTTTTAAGTACAGAACACCATACAAAAACACGCTTGAACAAAGTCACTCCGATATGCAAAATTCGAATCTCAAGAAGGAAAAATAGAGGATCACCTGCAGAAGATAAAAGAGATCGCTATCGCAAAGAATCGAATTCGATGCATTCTGGTGCGCATGTAGCTGTACGGGATGATTCCGATCACTCGGTTTCGAACGAACTTATCGTTATCGCCTTTACATTTCCCTCCATTCTGATTGAAAGATTCCCGCTGTAA

mRNA sequence

ATGAGAAGAAGATTGAGGAAATCAACATACGGATTCTTTGAAACTGAGCAATGGAATTTTCCGGCGTTCGCATTGCCAAAATCTAGGTTTTTAAGTACAGAACACCATACAAAAACACGCTTGAACAAAGTCACTCCGATATGCAAAATTCGAATCTCAAGAAGGAAAAATAGAGGATCACCTGCAGAAGATAAAAGAGATCGCTATCGCAAAGAATCGAATTCGATGCATTCTGGTGCGCATGTAGCTGTACGGGATGATTCCGATCACTCGGTTTCGAACGAACTTATCGTTATCGCCTTTACATTTCCCTCCATTCTGATTGAAAGATTCCCGCTGTAA

Coding sequence (CDS)

ATGAGAAGAAGATTGAGGAAATCAACATACGGATTCTTTGAAACTGAGCAATGGAATTTTCCGGCGTTCGCATTGCCAAAATCTAGGTTTTTAAGTACAGAACACCATACAAAAACACGCTTGAACAAAGTCACTCCGATATGCAAAATTCGAATCTCAAGAAGGAAAAATAGAGGATCACCTGCAGAAGATAAAAGAGATCGCTATCGCAAAGAATCGAATTCGATGCATTCTGGTGCGCATGTAGCTGTACGGGATGATTCCGATCACTCGGTTTCGAACGAACTTATCGTTATCGCCTTTACATTTCCCTCCATTCTGATTGAAAGATTCCCGCTGTAA

Protein sequence

MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGSPAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL

Homology

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BLAST of Csor.00g168560 vs. NCBI nr
Match: KAG6573654.1 (hypothetical protein SDJN03_27541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (570), Expect = 1.30e-73
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGS 60
           MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGS
Sbjct: 1   MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGS 60

Query: 61  PAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL 113
           PAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL
Sbjct: 61  PAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL 113

The following BLAST results are available for this feature:

BLAST of Csor.00g168560 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g168560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573654.1	1.30e-73	100.00	hypothetical protein SDJN03_27541, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g168560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g168560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g168560.m01	Csor.00g168560.m01	mRNA