Csor.00g166730 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g166730
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionIQ domain-containing protein IQM1-like
LocationCsor_Chr05: 396884 .. 398556 (+)
RNA-Seq ExpressionCsor.00g166730
SyntenyCsor.00g166730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCTCTGACTCACTTGGGTATGGCAACCGGCGCGACCACGCAACCAGTAGGGTTCCATGCGACAGAGCTTTTATTTGGGCCGAAATTCGTCTAAAGAGGCCCATATTTTAGTTGGGCCTGAAATTTTGTCTAATTTAAAATTTTAAATGAAAATAGCCCATAGGTATTTATGACGGCCCAACTTTGCTCATTTTTTTCCACCGCTACCCCACATGGTACTAACATATAAATTTGAAATTCAATTAAACACAAAATTTAAAATTATATTTGAGAGATCTTTTAAAATGTTAGATAAAATATTTGAAATATATTTTTTAATACATTTATTAAAGTTTTAGTCAGAAAAAATAAATGATTTAAATTCCCGATCTCTTGGCCTAAAATACATTATTAACAACAATTTAGCGGTATATAAATAAATAATAATAATAACTATGGTTAATACATGCTTTAAATATATATATATATATATATTTTTTTTTTTTTTTTTTGTTGGTTTAAAATATATATATTTTTAAAAGTTAAAATGAAAATTTAAAAAGGCTCTAAGTTAGAATTATTTTTTATTATGATTAACAAGTAGGCCATCAAATAATCTCTTGTCCCTTATAATTTGAGCTTTAAATTAAATAATAAGAAAAGGAACTCCAAAAACAAAAAAAAATAAATAATATTATTAAATTATTATAAAACCGGCCACATAATCATAATTAAAAGTAAAAAAAAAAAAAAGAATAAGAAGAAGATTCATTTCCGTTTGATTCGGTCACCGGCGAACGTGGAAGCCACGTGGACAACCATAGATGGTGGGTCCACGGAGGTCTGATTGTAGCCGATTCTCGAACGCATCACGTTTCCGAGAAAGAAAAGGAAGCGATACATTTTTTTAAAATCCCATTAGAAGCGCATCAGAAGAACAAACCAATCCAGAGGAGAGGAAGACCCATAGATAGAGATAGGCGGCGGAATAGACGGGGATTCGGCGGAGCCGCGAGGAGAGATTCCCTTTCCCTTGCGGTTAACCAGAACGGTTTCGATTATATATATGTTTATTTCACTTAACTTCTGCCAAGAAACTGCGATTTAGACTGCCCTTCTCCCGTCGTCACTTAGTCAAACCACGAGTACGTTCTTTCTTCAACTTGTTCTGTATTAGGTTTTCTCTTTTCGATGTATTTCCTTGTTTTAATACGTTGTTCGTGGTGGATTTTTGGTATTTTGTAGTCTCGATTTGTAAATCTCTATGGTAACTGGCCGATTTGTTTTCATCGAACTCTTGATCTGGTGTAGAAGCGGATTCTTGTTCTGATTTGATCTGTATTAGGTCGCGGCAGTTTTTTTTTTCACTGAATCTCTTGTAATTGAATATTTCCTTACGATTACGATGATCGAATCCTGATATGAGGGATTGGTATCTTTTTGATAGATTGATGGGGGAATTATTACATCTGAACGGGCTTTGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATTGGCTTGTGAATTGGCCCGATTCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTGAGAGAAAGGCCTTCTCACATTGTGTTTCAAGGGATAGATGGGATAAAGAATTCTTCAAGCTTCAGAGCGGATAA

mRNA sequence

ATGTTCTCTCTGACTCACTTGGGTATGGCAACCGGCGCGACCACGCAACCAACTGCCCTTCTCCCGTCGTCACTTAGTCAAACCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATTGGCTTGTGAATTGGCCCGATTCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTGAGAGAAAGGCCTTCTCACATTGTGTTTCAAGGGATAGATGGGATAAAGAATTCTTCAAGCTTCAGAGCGGATAA

Coding sequence (CDS)

ATGTTCTCTCTGACTCACTTGGGTATGGCAACCGGCGCGACCACGCAACCAACTGCCCTTCTCCCGTCGTCACTTAGTCAAACCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATTGGCTTGTGAATTGGCCCGATTCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTGAGAGAAAGGCCTTCTCACATTGTGTTTCAAGGGATAGATGGGATAAAGAATTCTTCAAGCTTCAGAGCGGATAA

Protein sequence

MFSLTHLGMATGATTQPTALLPSSLSQTTSSASLFLWMYLVVIQEEDWLVNWPDSFLGILRPPCLSVERKAFSHCVSRDRWDKEFFKLQSG
Homology
BLAST of Csor.00g166730 vs. NCBI nr
Match: KAG6598285.1 (hypothetical protein SDJN03_08063, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (479), Expect = 1.99e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MFSLTHLGMATGATTQPTALLPSSLSQTTSSASLFLWMYLVVIQEEDWLVNWPDSFLGIL 60
          MFSLTHLGMATGATTQPTALLPSSLSQTTSSASLFLWMYLVVIQEEDWLVNWPDSFLGIL
Sbjct: 1  MFSLTHLGMATGATTQPTALLPSSLSQTTSSASLFLWMYLVVIQEEDWLVNWPDSFLGIL 60

Query: 61 RPPCLSVERKAFSHCVSRDRWDKEFFKLQSG 91
          RPPCLSVERKAFSHCVSRDRWDKEFFKLQSG
Sbjct: 61 RPPCLSVERKAFSHCVSRDRWDKEFFKLQSG 91

BLAST of Csor.00g166730 vs. NCBI nr
Match: EXB66844.1 (hypothetical protein L484_019481 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 9.79e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 36  LWMYLVVIQEEDWLVNWPDSFLGILRPPC-LS-VERKAFSHCVSRDRWDKEFFKLQSG 91
           LWMYLV+I+EE+ LVN  DS LG+L P   LS +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

BLAST of Csor.00g166730 vs. NCBI nr
Match: MBA0835792.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 64.3 bits (155), Expect = 1.46e-09
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 34  LFLWMYLVVIQEEDWLVNWPDSFLGILRP-PCLSVERKAFSHCVSRDRWDKEFFKLQSG 91
           L +WM +   +E+D LVN P   L +L+P   L  E+K+FS C+ RDRWDKEFFKLQ G
Sbjct: 72  LRVWMQVYNCKEKDRLVNLPGFHLDVLKPLNLLPFEQKSFSFCIPRDRWDKEFFKLQVG 130

BLAST of Csor.00g166730 vs. NCBI nr
Match: KAA3490539.1 (IQ domain-containing protein IQM1-like [Gossypium australe])

HSP 1 Score: 58.5 bits (140), Expect = 1.88e-08
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 45  EEDWLVNWPDSFLGILRP-PCLSVERKAFSHCVSRDRWDKEFFKLQSG 91
           E+D LVN P   L +L+P   L  ++K+FS C+ RDRWDKEFFKLQ G
Sbjct: 81  EKDRLVNLPGFHLDVLKPLNYLPFKQKSFSFCIPRDRWDKEFFKLQGG 128

BLAST of Csor.00g166730 vs. NCBI nr
Match: KAG8491336.1 (hypothetical protein CXB51_014496 [Gossypium anomalum])

HSP 1 Score: 58.2 bits (139), Expect = 2.20e-07
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 38 MYLVVIQEEDWLVNWPDSFLGILRPP--CLSVERKAFSHCVSRDRWDKEFFKLQ 89
          MYLV I+ +D LVN     L +LRP    L  E+K+FS C+  DRWDKEFFKLQ
Sbjct: 1  MYLVSIEGKDRLVNLSGFDLDVLRPLKLLLPFEKKSFSFCIPIDRWDKEFFKLQ 54

BLAST of Csor.00g166730 vs. ExPASy TrEMBL
Match: W9RE16 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019481 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.74e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 36  LWMYLVVIQEEDWLVNWPDSFLGILRPPC-LS-VERKAFSHCVSRDRWDKEFFKLQSG 91
           LWMYLV+I+EE+ LVN  DS LG+L P   LS +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

BLAST of Csor.00g166730 vs. ExPASy TrEMBL
Match: A0A7J9JNP8 (Uncharacterized protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_008051 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.06e-10
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 34  LFLWMYLVVIQEEDWLVNWPDSFLGILRP-PCLSVERKAFSHCVSRDRWDKEFFKLQSG 91
           L +WM +   +E+D LVN P   L +L+P   L  E+K+FS C+ RDRWDKEFFKLQ G
Sbjct: 72  LRVWMQVYNCKEKDRLVNLPGFHLDVLKPLNLLPFEQKSFSFCIPRDRWDKEFFKLQVG 130

BLAST of Csor.00g166730 vs. ExPASy TrEMBL
Match: A0A5B6X8U1 (IQ domain-containing protein IQM1-like OS=Gossypium australe OX=47621 GN=EPI10_033993 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.12e-09
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 45  EEDWLVNWPDSFLGILRP-PCLSVERKAFSHCVSRDRWDKEFFKLQSG 91
           E+D LVN P   L +L+P   L  ++K+FS C+ RDRWDKEFFKLQ G
Sbjct: 81  EKDRLVNLPGFHLDVLKPLNYLPFKQKSFSFCIPRDRWDKEFFKLQGG 128

BLAST of Csor.00g166730 vs. ExPASy TrEMBL
Match: A0A7J6E2G2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_007349 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.97e-07
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 38 MYLVVIQEEDWLVNWPDSFLGILRPPCLSVERKAFS-HCVSRDR 80
          MYL+ I+E+ WLVN P  FLG+LRP  LS E K FS +CV RDR
Sbjct: 1  MYLITIEEQSWLVNLPKLFLGVLRPLQLSFELKPFSSYCVKRDR 44

BLAST of Csor.00g166730 vs. ExPASy TrEMBL
Match: A0A0B0P6Y9 (Graves disease carrier OS=Gossypium arboreum OX=29729 GN=F383_30216 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.29e-06
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 38 MYLVVIQEEDWLVNWPDSFLGILRPP--CLSVERKAFSHCVSRDRWDKEFFKLQ 89
          MYLV ++ +D LVN     L  LRP    L  E+K+FS C+  DRWDKEFFKLQ
Sbjct: 1  MYLVSVEGKDRLVNLSGFDLDGLRPLKLLLPFEKKSFSFCIPIDRWDKEFFKLQ 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6598285.11.99e-60100.00hypothetical protein SDJN03_08063, partial [Cucurbita argyrosperma subsp. sorori... [more]
EXB66844.19.79e-1262.07hypothetical protein L484_019481 [Morus notabilis][more]
MBA0835792.11.46e-0952.54hypothetical protein [Gossypium armourianum][more]
KAA3490539.11.88e-0856.25IQ domain-containing protein IQM1-like [Gossypium australe][more]
KAG8491336.12.20e-0755.56hypothetical protein CXB51_014496 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
W9RE164.74e-1262.07Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019481 PE=4 SV=1[more]
A0A7J9JNP87.06e-1052.54Uncharacterized protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_00... [more]
A0A5B6X8U19.12e-0956.25IQ domain-containing protein IQM1-like OS=Gossypium australe OX=47621 GN=EPI10_0... [more]
A0A7J6E2G21.97e-0761.36Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_007349 PE=3 SV=1[more]
A0A0B0P6Y91.29e-0653.70Graves disease carrier OS=Gossypium arboreum OX=29729 GN=F383_30216 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g166730.m01Csor.00g166730.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane