Csor.00g166680 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g166680
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGelsolin-related protein of 125 kDa isoform X1
LocationCsor_Chr05: 367228 .. 367820 (+)
RNA-Seq ExpressionCsor.00g166680
SyntenyCsor.00g166680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAACTCTCCCGCCATTGAACACTCTTTTCGTAAGCTTACGAGTCCTGTGAGAAATAGAGTTTCAATTCCTTGATGCGAAGTGATTCCGAGGAACTGTTGATCAATCTGTTACTGCGATTTACTCTTGGAAATTTCCGCGGAGCTTCTTACAAGTCTCCTGTTCGAGCATTCAAATAGGTTCTGTTTTATTTAAAGTACAATTTGGAAGTACATGTGACTTAATTGCTCACTGCAATACCATCAACAAGAAAGATGGTGCGAACAGCCAAGATTTTGAACCCTTTGATTTTTGTCCTGCAGTAACATTGCTCACTGGTCCTCTTCCTCATTGATGATCGGTTTCTGGCGATCGCAAAAACTCTGGAGAAGAATTTTCCTCCATCCAAGCTCGTTTTTTGATAAGATTGACGTTGTTCTTCATCTGATTGAAACTTTTCCATTAAAATTTGACGATGCTGTTGACAAGATCCCCTGCTTCAACCAGGTTGTGTTACTAGATTGGGTAATGACCCTCGCCATATCTTTGCTCAAGTTCATGATAACCATACTAATGAACTGGGGGAGAGATGGAACAAGAGATGAGTAA

mRNA sequence

ATGGAGGAAACTCTCCCGCCATTGAACACTCTTTTCGTAAGCTTACGAGTCCTTAACATTGCTCACTGGTCCTCTTCCTCATTGATGATCGGTTTCTGGCGATCGCAAAAACTCTGGAGAAGAATTTTCCTCCATCCAAGCTCGTTTTTTGATAAGATTGACGTTGTTCTTCATCTGATTGAAACTTTTCCATTAAAATTTGACGATGCTGTTGACAAGATCCCCTGCTTCAACCAGGTTGTGTTACTAGATTGGGTAATGACCCTCGCCATATCTTTGCTCAAGTTCATGATAACCATACTAATGAACTGGGGGAGAGATGGAACAAGAGATGAGTAA

Coding sequence (CDS)

ATGGAGGAAACTCTCCCGCCATTGAACACTCTTTTCGTAAGCTTACGAGTCCTTAACATTGCTCACTGGTCCTCTTCCTCATTGATGATCGGTTTCTGGCGATCGCAAAAACTCTGGAGAAGAATTTTCCTCCATCCAAGCTCGTTTTTTGATAAGATTGACGTTGTTCTTCATCTGATTGAAACTTTTCCATTAAAATTTGACGATGCTGTTGACAAGATCCCCTGCTTCAACCAGGTTGTGTTACTAGATTGGGTAATGACCCTCGCCATATCTTTGCTCAAGTTCATGATAACCATACTAATGAACTGGGGGAGAGATGGAACAAGAGATGAGTAA

Protein sequence

MEETLPPLNTLFVSLRVLNIAHWSSSSLMIGFWRSQKLWRRIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITILMNWGRDGTRDE
Homology
BLAST of Csor.00g166680 vs. NCBI nr
Match: KAG6598280.1 (hypothetical protein SDJN03_08058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227 bits (578), Expect = 7.25e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEETLPPLNTLFVSLRVLNIAHWSSSSLMIGFWRSQKLWRRIFLHPSSFFDKIDVVLHLI 60
           MEETLPPLNTLFVSLRVLNIAHWSSSSLMIGFWRSQKLWRRIFLHPSSFFDKIDVVLHLI
Sbjct: 1   MEETLPPLNTLFVSLRVLNIAHWSSSSLMIGFWRSQKLWRRIFLHPSSFFDKIDVVLHLI 60

Query: 61  ETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITILMNWGRDGTRDE 112
           ETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITILMNWGRDGTRDE
Sbjct: 61  ETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITILMNWGRDGTRDE 112

BLAST of Csor.00g166680 vs. NCBI nr
Match: XP_038884034.1 (myelin transcription factor 1 [Benincasa hispida] >XP_038884035.1 myelin transcription factor 1 [Benincasa hispida])

HSP 1 Score: 112 bits (279), Expect = 7.16e-27
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITI 100
           +IF      FDKID +LHLIETFP KFDDAVD+IPCFNQV+LLDW +T AISLLKFMITI
Sbjct: 78  KIFPPFKLVFDKIDHLLHLIETFPSKFDDAVDEIPCFNQVLLLDWTVTHAISLLKFMITI 137

Query: 101 LMNWGRDGTRDE 112
           LMNWGRDGTR++
Sbjct: 138 LMNWGRDGTREK 149

BLAST of Csor.00g166680 vs. NCBI nr
Match: XP_008444439.1 (PREDICTED: uncharacterized protein LOC103487764 [Cucumis melo] >XP_008444440.1 PREDICTED: uncharacterized protein LOC103487764 [Cucumis melo])

HSP 1 Score: 103 bits (258), Expect = 8.54e-24
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITI 100
           +IF      FDKID +LHLIETFP KFDDAVD+IPCFNQV+LLDW +T AISLLK MITI
Sbjct: 78  KIFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLLDWTVTHAISLLKSMITI 137

Query: 101 LMNWGRDGTRDE 112
           LMNWGRD  R++
Sbjct: 138 LMNWGRDVAREK 149

BLAST of Csor.00g166680 vs. NCBI nr
Match: XP_031736455.1 (gelsolin-related protein of 125 kDa [Cucumis sativus] >KAE8652048.1 hypothetical protein Csa_018704 [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 9.71e-24
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQ-VVLLDWVMTLAISLLKFMIT 100
           +IF      FDKIDV+LHLIETFP KFDDAVDKIPCFNQ V+LLDW +T  ISLL FMIT
Sbjct: 78  KIFPPSKLVFDKIDVLLHLIETFPSKFDDAVDKIPCFNQEVLLLDWTVTHVISLLNFMIT 137

Query: 101 ILMNWGRDGTRDE 112
           ILMNWGRD  R++
Sbjct: 138 ILMNWGRDVAREK 150

BLAST of Csor.00g166680 vs. NCBI nr
Match: KAA0061016.1 (gelsolin-related protein of 125 kDa isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.19e-23
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITI 100
           ++F      FDKID +LHLIETFP KFDDAVD+IPCFNQV+LLDW +T AISLLK MITI
Sbjct: 78  KVFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLLDWTVTHAISLLKSMITI 137

Query: 101 LMNWGRDGTRDE 112
           LMNWGRD  R++
Sbjct: 138 LMNWGRDVAREK 149

BLAST of Csor.00g166680 vs. ExPASy TrEMBL
Match: A0A1S3BAB2 (uncharacterized protein LOC103487764 OS=Cucumis melo OX=3656 GN=LOC103487764 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 4.13e-24
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITI 100
           +IF      FDKID +LHLIETFP KFDDAVD+IPCFNQV+LLDW +T AISLLK MITI
Sbjct: 78  KIFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLLDWTVTHAISLLKSMITI 137

Query: 101 LMNWGRDGTRDE 112
           LMNWGRD  R++
Sbjct: 138 LMNWGRDVAREK 149

BLAST of Csor.00g166680 vs. ExPASy TrEMBL
Match: A0A5A7V3D3 (Gelsolin-related protein of 125 kDa isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001510 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 5.77e-24
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITI 100
           ++F      FDKID +LHLIETFP KFDDAVD+IPCFNQV+LLDW +T AISLLK MITI
Sbjct: 78  KVFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLLDWTVTHAISLLKSMITI 137

Query: 101 LMNWGRDGTRDE 112
           LMNWGRD  R++
Sbjct: 138 LMNWGRDVAREK 149

BLAST of Csor.00g166680 vs. ExPASy TrEMBL
Match: A0A6J1GHV9 (uncharacterized protein LOC111454325 OS=Cucurbita moschata OX=3662 GN=LOC111454325 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 8.57e-24
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLAISLLKFMITI 100
           +IF      FDKID VLHL+ETFP KF DAVDK+PCFNQV+LL+W +T AISLL+FMITI
Sbjct: 89  KIFPPSRLVFDKIDDVLHLVETFPGKFADAVDKLPCFNQVLLLEWAVTHAISLLEFMITI 148

Query: 101 LMNWGRDGTRDE 112
           LMN GRDGTR++
Sbjct: 149 LMNLGRDGTREK 160

BLAST of Csor.00g166680 vs. ExPASy TrEMBL
Match: A0A0A0LMZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351010 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.58e-23
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 41  RIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQ-VVLLDWVMTLAISLLKFMIT 100
           +IF      FDKIDV+LHLIETFP KFDDAVDKIPCFNQ V+LLDW +T  ISLL FMIT
Sbjct: 78  KIFPPSKLVFDKIDVLLHLIETFPSKFDDAVDKIPCFNQEVLLLDWTVTHVISLLNFMIT 137

Query: 101 ILMNWGRDGTRDE 112
           ILMNWGRD  R++
Sbjct: 138 ILMNWGRDVAREK 150

BLAST of Csor.00g166680 vs. ExPASy TrEMBL
Match: A0A6J1BQ09 (uncharacterized protein LOC111004599 OS=Momordica charantia OX=3673 GN=LOC111004599 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.15e-22
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 31  GFWRSQKLWRRIFLHPSSFFDKIDVVLHLIETFPLKFDDAVDKIPCFNQVVLLDWVMTLA 90
           GF  +  +   IF      FDKID +L LIET P+KFDDAVDK+PCFNQV LLDW +  A
Sbjct: 68  GFLATANIVEXIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLLDWAVIHA 127

Query: 91  ISLLKFMITILMNWGRDGTRDE 112
           ISLLKFMI ILMNW +DG R++
Sbjct: 128 ISLLKFMIAILMNWVKDGIREK 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6598280.17.25e-75100.00hypothetical protein SDJN03_08058, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038884034.17.16e-2776.39myelin transcription factor 1 [Benincasa hispida] >XP_038884035.1 myelin transcr... [more]
XP_008444439.18.54e-2472.22PREDICTED: uncharacterized protein LOC103487764 [Cucumis melo] >XP_008444440.1 P... [more]
XP_031736455.19.71e-2472.60gelsolin-related protein of 125 kDa [Cucumis sativus] >KAE8652048.1 hypothetical... [more]
KAA0061016.11.19e-2370.83gelsolin-related protein of 125 kDa isoform X1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A1S3BAB24.13e-2472.22uncharacterized protein LOC103487764 OS=Cucumis melo OX=3656 GN=LOC103487764 PE=... [more]
A0A5A7V3D35.77e-2470.83Gelsolin-related protein of 125 kDa isoform X1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1GHV98.57e-2470.83uncharacterized protein LOC111454325 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
A0A0A0LMZ21.58e-2372.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351010 PE=4 SV=1[more]
A0A6J1BQ097.15e-2260.98uncharacterized protein LOC111004599 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37710TRANSMEMBRANE PROTEINcoord: 46..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g166680.m01Csor.00g166680.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane