Csor.00g166070 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g166070
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRNA-binding protein 48
LocationCsor_Chr05: 106912 .. 110992 (+)
RNA-Seq ExpressionCsor.00g166070
SyntenyCsor.00g166070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGCTATACAAACGAGCCCCCTGCGGTTCGCGTCTATACGATTTGCGATGAGTCAAGGTCTACTCCGCTTCTCTTATTTCTCCTTTGCGGAATCCAAGATCTATGGGGCTTATATTTACCTCGTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAATCCTGCAGGTATTTGATTGTGAGAAACGTTCCGGCATTGGGTTGCGGAGATGAGCTGCTCAAACTGTTCTCCTCTTATGGAAACCTTGAAGAGTACTCTTTTCGTTTCCGTTCTTTCTTCTATAATCATCTTTACATCCTTTTTCTGTAGCGCGTTATGTTAGTTTACCTCAGCTGCGACATGTATTGCCATTTCACCTTGAAAGCAGTGTCGGATTGGTTTCTGATAATTTCATATGCCTATCTTAAGAATATTCAACCCCTCTTATGCCTACATATTTTCCTTCTGTCTTATTTCATACTCCGACAGGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCAGCAATGCCAGGTAATTTCAGCTTGGTTGTGGTTCTCTTTTGATCAAAATAATGCGTTATTGAGCCCCTGTATTTGAACCATAATATTTTAACTTTTAGGTTTGCTAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCCTATGCTCCTGACTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTGTAAGTTTGTGTTTGCGCAAAAAGTAGGCTTTGGCATATTTTGTTTGCGCAAAAAGTAGGCTTTGGCATATTTTGTGTATGATAGGAAGATGTTGTTTTAGGAGGAAATGGTGTTTCCTTCCAATAGTTCACTTTTAAGCATGTTATAACTTTGCTATCAGCTGGAAGACCAAGAGGATCTGCCGTTAATTCAGCAACCACGAAGTTTACAAATCCTTCTCATTCTCATTATACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGTATAAGCAGAATGAAAATTTGCAGTTTCTCCAATCTTGACATAGTTTAAACTGTCCTTTTTTGGTAGGAATTATGGAGATGCAGCACTCAGTTCCAATCCACATGTGTCTCAAATAACAAGAGTTTCCTCTGACCAGGTTTGTTATCATAGTTTTTTTTCCTTCTCTTGTCATCTCACCTTTTATGTTATGATTATTAACAAAGCTAGGAATCATTATTCTGTGTTCGTTTAGTTTATGCTTTCTCTTGTACTTGATGTATTTGGACGTAGTTCCATTACATGCTGCAATACGGGTACAAGGAGTTAAATCCAACAGGTTGCACGATTACTTTGAAAGGCAAATGAATGTGATAGGTTGCAAGCACAAAATTAGAAAATCTCTTTATTTGTAATTAGGCAAGTATATGCCTTTTGCTTGCTCTTTTGCTGATCAATTCAAATAAAATAGTGGGGTGATATGCAATCAACGTAGTGTTATTTTACTTGATTGGAGGCTCTTCTTATATGCTGCCTCCTTTTGTGGACTCTCTTTTTGTATGTCTTTATATTCTTTCTTTCTCTTTTTGTTCTTTTCCTTAATGAAAGTTCGATTTCTCTTCAAAAAGAAGAATAAAATGTATTTATCATCAACCTAGTCATGCCAATAGGCTAACAATACTAACTACTGACTCCATAACTTGCCCCATCTATCATGAATGGTAGGCACATAGGTTATTCAGTGACTATGGTATTCTAATTTTTGGTTTTTTTTTTCATTTCCTCATTTTGTTTTTCAAGAATTCGAACTAACGTGTCAATAGTTGTAATATAGTAACCATCAATTCCTCAATAACAGAGTTCTCAAGTGTTGGTGCTTCAAGTCTCTCATTAATGCATAGTTCACCGAGTTGTTAGACTTTTGACCTAAAATGTCTTTTGCATCTTGGGTCAGATTTGTGTGTTGAAAAGATTTAAAACAAATGACACCGTTTATTTGGCTGAGAAGACCAAACCACTTGGCATTCCATTGGAGGTTACCCAAACATCAATATTTGAATCAAAATTCTACTCTAGGCTCCTCATCAAATTCATTGTTGAAGATATTTTCATCAGTTTTGACTACCTCTTCCAAATTATCTTTAGAATTATTTTTCTCCAAATTCCATACCCAATGCCACAAATTGTATTATATTGAAGAGTGTAGTAGGCTTCTAACTCTGGGTAATGAAGAAGGTTGGAGAGGCCTACGTTTGTGTACTGTGGCTCCTTGGGCTTGAGGACCTTGGAAATCAACTTGGCTTGTTATCCTTGCTATCAGACTGGTCGAAGGTTTAGATGACTGATATGTATCTCTAGTCTTCAGGGCTTCTTTAAAATATATGTTATAATCTCACTCTAGAGAGAGAATGGAAATCAGGTTCACCTTCTTATCGTAGTTATTACACCATCGGAAAGAAATGGAGAAAATAAGTCCTTGACATTCATTGCCGTCAGATTTCTTTACTGTTAGTCGAACTTTATTTTCTTTTGCCCTTTTTCCCTGGAATCAGGGATTTGGTGACCTTAAGTGAGGTGGGGAGAGAAAGGTCCAACTACGCATTGGAGAAATGAGCATGATGCAATAGTGACTTTTCATTGAACTCAGATTTGAAGATTTGAAGATAGAGTGGCTTAGTGTCCATATAGAATTTACATACATGCATATATACACGCGCACACATGCACACATACATGAAGCAAATGCCTCTTGGTGTGAATCAATGGTGAAGAAGATGCACTTTTGCAATGTAATAGATATTGACCTGGTGGGTGGAAATTAGGGGTAGGGGCTTGATTTTCTTTGGATGAAGCAAGAGCTTCTTGGTGTGGAACAAGTGTGTAGATGTTCGAGGACATGGTTTTGTATCGGAATGTGGAGAAAAGATTTTTTTGGTGGCAGGTCACACCACCCTCAATATCTCAACTCCATTCTTCGTTTGTGGCTATCCTTCATCTTTAGGAACAACCTAAGATAATATATATATATATATATATATTTTTTTTTTTTTTTGAGTTCAGGAACAACCAAGACTCTTCGATACCAGATTATTGCAATAAGATTTTGTGATTAAGTCAAAATTATCAAAGGGAAAACCACCAAAACTGTCTAAAGTCTAAATTTTTTAATTATAAAAAAACTTCCAAGATAAACGAAGTATGGGCTATTTAACTTATAAAAAGATAAGAATAACTAGTGAATCACGAATGAACTAATCAATAGAATTAACTAACTGACATTAACATCTAACTAATTATCTATTGCCTTTATAGTTTTCTTACTGACACACTTGTTAGTTGCAGTTGCAGTTATGTTCAGTATACTTTCATTTATCAGTTTCAGGTTATTAATAAGTGCCTTTTTTATCGTTCTTCCTCATTTTTTCCCTGAAATAAAATCATAGTCTTGTTAAGACGGGCAACCTTTTCCTGTAGGACCTCTTGACTTGATTTTGTAGATTTTCTCTTCTTTGATTGTTTTCAAGTACGTTCTTCATTGTTAAGGTTTAATTCCCTTTGGTTAGCTGTAGAGCCATGTACTCTTTTAGTTATATTTGTGAGTTTTGCCCTATTGATTTTTTTGATGTACATGTCTGATTGATGTTGGTTGGCTGACCCATCAGATAATGGCTTTTGAATCTTCTTGTTTCTGGTTGAATGTATGGATTGAATGTTTGTGGACGTTACTTCTTTTCTATATATATTCCTGTCCTTGTTGCGTAGCCTGTTGTAGTTTTTCTTGTGGCTAAAAATGTCACTTTTTTCTCGTGTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGGTTAAAAAATTTATATATATCATATGATCAATTCTCCACATTTGAGCGCATTGTGATTTAATCATTGCTTACTAACTTTGTGCTTTAGATTCAATCATGCAGCGAAGATCTGGAAGCTGGACCTGTGAGCAAGAGATCACGTGTGGATAATAGGAGAAGAATCTAA

mRNA sequence

ATGCCTCGCTATACAAACGAGCCCCCTGCGGTTCGCGTCTATACGATTTGCGATGAGTCAAGGTATTTGATTGTGAGAAACGTTCCGGCATTGGGTTGCGGAGATGAGCTGCTCAAACTGTTCTCCTCTTATGGAAACCTTGAAGAGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCAGCAATGCCAGGTTTGCTAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCCTATGCTCCTGACTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGAAGACCAAGAGGATCTGCCGTTAATTCAGCAACCACGAAGTTTACAAATCCTTCTCATTCTCATTATACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCAGTTCCAATCCACATGTGTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCATGCAGCGAAGATCTGGAAGCTGGACCTGTGAGCAAGAGATCACGTGTGGATAATAGGAGAAGAATCTAA

Coding sequence (CDS)

ATGCCTCGCTATACAAACGAGCCCCCTGCGGTTCGCGTCTATACGATTTGCGATGAGTCAAGGTATTTGATTGTGAGAAACGTTCCGGCATTGGGTTGCGGAGATGAGCTGCTCAAACTGTTCTCCTCTTATGGAAACCTTGAAGAGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCAGCAATGCCAGGTTTGCTAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCCTATGCTCCTGACTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGAAGACCAAGAGGATCTGCCGTTAATTCAGCAACCACGAAGTTTACAAATCCTTCTCATTCTCATTATACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCAGTTCCAATCCACATGTGTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCATGCAGCGAAGATCTGGAAGCTGGACCTGTGAGCAAGAGATCACGTGTGGATAATAGGAGAAGAATCTAA

Protein sequence

MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI
Homology
[Close]
BLAST of Csor.00g166070 vs. ExPASy Swiss-Prot
Match: A4FVJ7 (RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.9e-25
Identity = 65/154 (42.21%), Postives = 100/154 (64.94%), Query Frame = 0 

Query: 10  AVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKF 69
           AV+VYTI  ESRYL+V+ VPA+G   EL++LF+ YG +EE +P+D    ++FT+VY ++F
Sbjct: 40  AVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQF 99

Query: 70  HLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREV------LARLDS 129
             +++AR AKR  DE  F G +L V YAP++E++ +TK+KL+ RRR V       A+L S
Sbjct: 100 QKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNWASQNAAKLHS 159

Query: 130 GRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKR 158
              + + VN+ ++  T+   +   + QKN  E R
Sbjct: 160 ---QQAEVNTESSSSTDTRTAEAPIMQKNPEEAR 190

[Close]
BLAST of Csor.00g166070 vs. ExPASy Swiss-Prot
Match: Q5R4U2 (RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-23
Identity = 52/116 (44.83%), Postives = 80/116 (68.97%), Query Frame = 0 

Query: 3   RYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFT 62
           R    P AV+VYTI  ES+YL+++ VPA+G   EL++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGTIEQYNALDEYPAEDFT 87

Query: 63  DVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVL 119
           +VY +KF  + +AR AKRK+DE  F G  L V YAP+FE++ +T++KL+VR+  V+
Sbjct: 88  EVYLIKFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143

[Close]
BLAST of Csor.00g166070 vs. ExPASy Swiss-Prot
Match: Q5RL73 (RNA-binding protein 48 OS=Homo sapiens OX=9606 GN=RBM48 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-22
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 0 

Query: 3   RYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFT 62
           R    P AV+VYTI  ES+YL+++ VPA+G   EL++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFT 87

Query: 63  DVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVL 119
           +VY +KF  + +AR AKRK+DE  F G  L V YAP+FE++ +T++KL++R+  V+
Sbjct: 88  EVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143

[Close]
BLAST of Csor.00g166070 vs. ExPASy Swiss-Prot
Match: Q561R3 (RNA-binding protein 48 OS=Rattus norvegicus OX=10116 GN=Rbm48 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-22
Identity = 50/112 (44.64%), Postives = 77/112 (68.75%), Query Frame = 0 

Query: 3   RYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFT 62
           R    P AV+VYTI  ES+YL+++ VPA+G   EL++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFT 87

Query: 63  DVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRR 115
           +VY +KF  + +AR AK+K+DE  F G  L V YAP+FE++ +T++KLE R+
Sbjct: 88  EVYLIKFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLEERK 139

[Close]
BLAST of Csor.00g166070 vs. ExPASy Swiss-Prot
Match: Q8K2X2 (RNA-binding protein 48 OS=Mus musculus OX=10090 GN=Rbm48 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 7.9e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 0 

Query: 3   RYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFT 62
           R    P AV+VYTI  ES+YL+++ VPA+G   EL++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFT 87

Query: 63  DVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRR 115
           +VY +KF  + +AR AK+K+DE  F G  L V YAP+FE++ +T++KL+ R+
Sbjct: 88  EVYLIKFVKLQSARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERK 139

[Close]
BLAST of Csor.00g166070 vs. NCBI nr
Match: KAG6598220.1 (RNA-binding protein 48, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451 bits (1160), Expect = 7.10e-160
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. NCBI nr
Match: XP_022997621.1 (RNA-binding protein 48 isoform X1 [Cucurbita maxima])

HSP 1 Score: 448 bits (1153), Expect = 8.29e-159
Identity = 225/226 (99.56%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSCSE LEAGPVSKRSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. NCBI nr
Match: XP_022961642.1 (RNA-binding protein 48 isoform X1 [Cucurbita moschata])

HSP 1 Score: 444 bits (1143), Expect = 2.77e-157
Identity = 223/226 (98.67%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           L+SGRPRGSAVNSATTKFTNPSHSHYTLEQK+SLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LNSGRPRGSAVNSATTKFTNPSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSCSE LEAGPVSKRSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. NCBI nr
Match: XP_023545649.1 (RNA-binding protein 48 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444 bits (1142), Expect = 3.94e-157
Identity = 223/226 (98.67%), Postives = 223/226 (98.67%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNY DAALSSNPHVSQITRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYADAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSC E LEAGPVSKRSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCCEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. NCBI nr
Match: XP_038884635.1 (RNA-binding protein 48 isoform X1 [Benincasa hispida])

HSP 1 Score: 408 bits (1049), Expect = 5.93e-143
Identity = 202/226 (89.38%), Postives = 215/226 (95.13%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPR+T+EPPAVRVYT+CDESRYL+VRNVPALGCGD+LLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRFTDEPPAVRVYTVCDESRYLVVRNVPALGCGDDLLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLV++ARFAKRKLDEFVFLGNRLQVSYAP+FESLLDT+EKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVTSARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTEEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGRPRGSAV+S T K TNPS SHYTLEQKNSLE RNYGD  L SNPHVSQITRVSSDQ
Sbjct: 121 LDSGRPRGSAVSSTTAKRTNPSRSHYTLEQKNSLETRNYGDTTLISNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQS SE L+AGP SK+SR+DNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. ExPASy TrEMBL
Match: A0A6J1K7Z4 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 4.01e-159
Identity = 225/226 (99.56%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSCSE LEAGPVSKRSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. ExPASy TrEMBL
Match: A0A6J1HAQ6 (RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1)

HSP 1 Score: 444 bits (1143), Expect = 1.34e-157
Identity = 223/226 (98.67%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           L+SGRPRGSAVNSATTKFTNPSHSHYTLEQK+SLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LNSGRPRGSAVNSATTKFTNPSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSCSE LEAGPVSKRSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. ExPASy TrEMBL
Match: A0A6J1DGJ2 (RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111020241 PE=3 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 4.08e-143
Identity = 202/226 (89.38%), Postives = 217/226 (96.02%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYT+E PAVRVYTICDESR+LIVRNVPALGCGD+LLKLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRYTDEHPAVRVYTICDESRFLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVANARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGR +GSAV S TTK TNP+HSHYTLEQKNSLEKRNYGDAAL +NPHVSQ+T+VSSDQ
Sbjct: 121 LDSGRSKGSAVRSTTTKLTNPAHSHYTLEQKNSLEKRNYGDAALIANPHVSQMTKVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226
           D+FASESMN+TVHLVREKLDKIQS SE LE GP+SK+SRVDNRRRI
Sbjct: 181 DHFASESMNRTVHLVREKLDKIQSSSEHLEGGPMSKKSRVDNRRRI 226

[Close]
BLAST of Csor.00g166070 vs. ExPASy TrEMBL
Match: A0A6J1K5M2 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 406 bits (1044), Expect = 1.16e-142
Identity = 204/216 (94.44%), Postives = 207/216 (95.83%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQS----CSEDLEAG 212
           DYFASESMNQTVHLVREKLDK  S    C +++  G
Sbjct: 181 DYFASESMNQTVHLVREKLDKRTSGSWTCEQEITCG 216

[Close]
BLAST of Csor.00g166070 vs. ExPASy TrEMBL
Match: A0A6J1HCE2 (RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1)

HSP 1 Score: 400 bits (1029), Expect = 2.24e-140
Identity = 201/206 (97.57%), Postives = 203/206 (98.54%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           L+SGRPRGSAVNSATTKFTNPSHSHYTLEQK+SLEKRNYGDAALSSNPHVSQITRVSSDQ
Sbjct: 121 LNSGRPRGSAVNSATTKFTNPSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSCS 206
           DYFASESMNQTVHLVREKLDK  S S
Sbjct: 181 DYFASESMNQTVHLVREKLDKRTSGS 206

[Close]
BLAST of Csor.00g166070 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 244.6 bits (623), Expect = 7.7e-65
Identity = 137/249 (55.02%), Postives = 171/249 (68.67%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           M RY +E PAVRVYT+CDESRY+IVRNVPALGCGD+L++LF +YG +EECKPMDAE+C E
Sbjct: 1   MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVY++KF L++NARFAKRKLDE  FLGNRLQ+SYAP++E++ DTK+KLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           L+   P+     S  TK   P+    T     S ++R         N   + +TRVSSDQ
Sbjct: 121 LN---PQKEKSTSQVTKLAGPA---LTQTDNVSSQRREMEYQFHRGN---APVTRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQ-----------SCSEDLEAG------------PVSKR 227
           +YFAS SMNQTV  VREKL+KI+           S ++  E+G            P  KR
Sbjct: 181 EYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLKR 240

[Close]
BLAST of Csor.00g166070 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 244.6 bits (623), Expect = 7.7e-65
Identity = 137/249 (55.02%), Postives = 171/249 (68.67%), Query Frame = 0 

Query: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60
           M RY +E PAVRVYT+CDESRY+IVRNVPALGCGD+L++LF +YG +EECKPMDAE+C E
Sbjct: 1   MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120
           FTDVY++KF L++NARFAKRKLDE  FLGNRLQ+SYAP++E++ DTK+KLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180
           L+   P+     S  TK   P+    T     S ++R         N   + +TRVSSDQ
Sbjct: 121 LN---PQKEKSTSQVTKLAGPA---LTQTDNVSSQRREMEYQFHRGN---APVTRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQ-----------SCSEDLEAG------------PVSKR 227
           +YFAS SMNQTV  VREKL+KI+           S ++  E+G            P  KR
Sbjct: 181 EYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLKR 240

[Close]
BLAST of Csor.00g166070 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-55
Identity = 119/218 (54.59%), Postives = 150/218 (68.81%), Query Frame = 0 

Query: 15  TICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSN 74
           ++CDESRY+IVRNVPALGCGD+L++LF +YG +EECKPMDAE+C EFTDVY++KF L++N
Sbjct: 371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430

Query: 75  ARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSA 134
           A    RKLDE  FLGNRLQ+SYAP++ES+ DTKEKLE RR+EVLARL+   P  +   S 
Sbjct: 431 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQ 490

Query: 135 TTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHL 194
            TK   P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  
Sbjct: 491 VTKLAGPA-----LTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEYFASSSMNQMVKT 550

Query: 195 VREKLDKIQSCSEDLEAGPVS------KRSRVDNRRRI 227
           VREKL+KI+         P S      KR+RVDNRRRI
Sbjct: 551 VREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575

[Close]
BLAST of Csor.00g166070 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-55
Identity = 119/218 (54.59%), Postives = 150/218 (68.81%), Query Frame = 0 

Query: 15  TICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSN 74
           ++CDESRY+IVRNVPALGCGD+L++LF +YG +EECKPMDAE+C EFTDVY++KF L++N
Sbjct: 346 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 405

Query: 75  ARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSA 134
           A    RKLDE  FLGNRLQ+SYAP++ES+ DTKEKLE RR+EVLARL+   P  +   S 
Sbjct: 406 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQ 465

Query: 135 TTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHL 194
            TK   P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  
Sbjct: 466 VTKLAGPA-----LTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEYFASSSMNQMVKT 525

Query: 195 VREKLDKIQSCSEDLEAGPVS------KRSRVDNRRRI 227
           VREKL+KI+         P S      KR+RVDNRRRI
Sbjct: 526 VREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 550

The following BLAST results are available for this feature:
BLAST of Csor.00g166070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FVJ79.9e-2542.21RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1[more]
Q5R4U24.2e-2344.83RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1[more]
Q5RL731.6e-2243.97RNA-binding protein 48 OS=Homo sapiens OX=9606 GN=RBM48 PE=1 SV=1[more]
Q561R32.7e-2244.64RNA-binding protein 48 OS=Rattus norvegicus OX=10116 GN=Rbm48 PE=2 SV=1[more]
Q8K2X27.9e-2243.75RNA-binding protein 48 OS=Mus musculus OX=10090 GN=Rbm48 PE=2 SV=2[more]
BLAST of Csor.00g166070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598220.17.10e-160100.00RNA-binding protein 48, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022997621.18.29e-15999.56RNA-binding protein 48 isoform X1 [Cucurbita maxima][more]
XP_022961642.12.77e-15798.67RNA-binding protein 48 isoform X1 [Cucurbita moschata][more]
XP_023545649.13.94e-15798.67RNA-binding protein 48 [Cucurbita pepo subsp. pepo][more]
XP_038884635.15.93e-14389.38RNA-binding protein 48 isoform X1 [Benincasa hispida][more]
BLAST of Csor.00g166070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K7Z44.01e-15999.56RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1[more]
A0A6J1HAQ61.34e-15798.67RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1[more]
A0A6J1DGJ24.08e-14389.38RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111020241 PE=3 SV=1[more]
A0A6J1K5M21.16e-14294.44RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1[more]
A0A6J1HCE22.24e-14097.57RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1[more]
BLAST of Csor.00g166070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27790.17.7e-6555.02RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G27790.27.7e-6555.02RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G27300.11.1e-5554.59pentatricopeptide (PPR) repeat-containing protein [more]
AT5G27300.21.1e-5554.59pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..92
e-value: 5.3E-6
score: 26.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 21..99
score: 9.746194
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 17..115
e-value: 3.2E-9
score: 38.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..146
IPR039599RNA-binding protein 48PANTHERPTHR20957UNCHARACTERIZEDcoord: 3..226
IPR034264RBM48, RNA recognition motifCDDcd12442RRM_RBM48coord: 11..110
e-value: 8.34256E-55
score: 168.625
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g166070.m01Csor.00g166070.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005654 nucleoplasm
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding