Csor.00g166060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g166060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptioncytochrome b-c1 complex subunit 8-like
LocationCsor_Chr05: 104467 .. 105917 (+)
RNA-Seq ExpressionCsor.00g166060
SyntenyCsor.00g166060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGCAACCTGTTCGGATGAAGGCTGTGATCTATGCTTTATCGCCGTTCCAGCAGAAGACTATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCTGAGAACTGGATCAGTGCCACCCTTCTAATCACCCCCGTCGTCGGAACCTACACGTAATTTTTTCATCTCCTTTTTCCTTTCCTTAATTTCATATCTTTTGAAATTTCGATTTTAGGGTTTGCCCGTTGAATGCTTTCCTCCCTTCATATTTCAATATGTTATCAATTTTTTTTCTTCTTAAAATCAAGTCTTCATTTGTTTCTCGACGAGCTCGGTAGTTCGCCTTTTGATAACACTTGGTTGGGTCCAGTCTAGGTGAGAAATCTATTAATCAGATTCAAAGAGGAAACAATTCCGTCGTAGAATTCTATTAATGATTTGGTCTTTTTTTTTCTTTTTTATAGACTTAGCCTTAAGATCTAAAATGTTAAATATTTTCCTCAAAGCAATCAAATTTTTACTGGAACTGAACACCAGATTGCATCTTATTGCGCATTCAGATTGATTTGTTTTTTTATCCGTGGGAATGGAATAGGAACATCTATGTTTTTATTTTTATATCTATTTCTTTTTGGAGCGATCTCGTGATAATGTTATTGTCCTCAACTGCAAGTTTTCATTTCTGTTTCCGATTTTGTTATCAGTAGGCGTTGCCGCACTTGATTGATACTGTTCCTAGTTCATGTCAATCAGATTTGTAGTCACTCTTCCCCCGTCTGTGTATAGTTTTATTAACCTTTAAATACTTTGGTCTGTTTTAAATTCACGCACTCTACGATCAAAGAGCAAAATTAGTTCTATAGTGTATAGGGTAGAGCTATTAGCTTTTGGATATATTATAGAATAGAGATTAAGAGTTATCATCCCCACATGCAAGATTGAGGAATTGGATCCGGGCAAGAGGTTTAGAAATCAATCTAAAACTCATTTTGGATGATAACACGATGACTAATTCATGCTTTATATTACTTGTGTGAGACGAAAAAAAATGACATCTTTGTAGCAGAATGATGAAATTAGCATTACCATGCATGAGGAAACGTTGTATTCTTCAAGTATTTTGAGCTCTAGATGGGATGGTTTGATAGCCATTTTTTTGGTTATAACTAAAATTTCCATTTTGCCTAAAGATGTATTATGCAGTCTTGGCGTCAGACGAGACCAAATTATGGATGGGTCTCGAGTTTTTGTTAACTTCGATTGAAGTATCGTTTGCATATACATGTATATGATAAATGACTTGAATTAGTTAATTGATCGGTGAAAAGTGCCTCCATGTTTGTTGATGAACATGTGGATGTATATGATTCAGTCGTAAACTTGTTATTTTACTCTCTGGATGCAGGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGA

mRNA sequence

ATGGGGAAGCAACCTGTTCGGATGAAGGCTGTGATCTATGCTTTATCGCCGTTCCAGCAGAAGACTATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCTGAGAACTGGATCAGTGCCACCCTTCTAATCACCCCCGTCGTCGGAACCTACACGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGA

Coding sequence (CDS)

ATGGGGAAGCAACCTGTTCGGATGAAGGCTGTGATCTATGCTTTATCGCCGTTCCAGCAGAAGACTATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCTGAGAACTGGATCAGTGCCACCCTTCTAATCACCCCCGTCGTCGGAACCTACACGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGA

Protein sequence

MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQQYKENEKLSHRY
Homology
BLAST of Csor.00g166060 vs. ExPASy Swiss-Prot
Match: Q9SG91 (Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-28
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWISATLL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSHRY 73
           +KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Csor.00g166060 vs. ExPASy Swiss-Prot
Match: P46269 (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-27
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YA+SPFQQK M GLW DL GKIHHK+SENWISATLL+ P+VGTY+Y Q
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 QYKENEKLSHRY 73
           + E EKL HRY
Sbjct: 61 HFLEKEKLEHRY 72

BLAST of Csor.00g166060 vs. ExPASy Swiss-Prot
Match: Q9FLB7 (Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-27
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWIS  LL+ PVVGTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKENEKLSHRY 73
           +KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Csor.00g166060 vs. NCBI nr
Match: XP_022961649.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023545652.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6598219.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029201.1 hypothetical protein SDJN02_07538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (381), Expect = 4.61e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          QYKENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g166060 vs. NCBI nr
Match: XP_022951208.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023537368.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6585163.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020083.1 hypothetical protein SDJN02_16765 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (372), Expect = 1.09e-44
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QFKENEKLSHRY 72

BLAST of Csor.00g166060 vs. NCBI nr
Match: XP_038886592.1 (cytochrome b-c1 complex subunit 8-like [Benincasa hispida])

HSP 1 Score: 143 bits (361), Expect = 5.21e-43
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQK M+GLWNDL GKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLPGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          QYKENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g166060 vs. NCBI nr
Match: XP_022131282.1 (cytochrome b-c1 complex subunit 8-like [Momordica charantia])

HSP 1 Score: 141 bits (356), Expect = 3.02e-42
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          QYKE EKL+HRY
Sbjct: 61 QYKEKEKLAHRY 72

BLAST of Csor.00g166060 vs. NCBI nr
Match: XP_008444338.1 (PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo] >KAA0061082.1 cytochrome b-c1 complex subunit 8-like [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 1.23e-41
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQK MSGLWNDL+GKIHHKISENWISA LLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKENEKLSHRY 72
          QYKE EKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of Csor.00g166060 vs. ExPASy TrEMBL
Match: A0A6J1K5M6 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492502 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.23e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          QYKENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g166060 vs. ExPASy TrEMBL
Match: A0A6J1HEN4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111462357 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.23e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          QYKENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g166060 vs. ExPASy TrEMBL
Match: A0A6J1KUK4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111496537 PE=3 SV=1)

HSP 1 Score: 147 bits (372), Expect = 5.28e-45
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QFKENEKLSHRY 72

BLAST of Csor.00g166060 vs. ExPASy TrEMBL
Match: A0A6J1GH36 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111454117 PE=3 SV=1)

HSP 1 Score: 147 bits (372), Expect = 5.28e-45
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QFKENEKLSHRY 72

BLAST of Csor.00g166060 vs. ExPASy TrEMBL
Match: A0A6J1BQK7 (cytochrome b-c1 complex subunit 8-like OS=Momordica charantia OX=3673 GN=LOC111004551 PE=3 SV=1)

HSP 1 Score: 141 bits (356), Expect = 1.46e-42
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYTYAQ 60

Query: 61 QYKENEKLSHRY 72
          QYKE EKL+HRY
Sbjct: 61 QYKEKEKLAHRY 72

BLAST of Csor.00g166060 vs. TAIR 10
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-29
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWISATLL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSHRY 73
           +KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Csor.00g166060 vs. TAIR 10
Match: AT5G05370.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-28
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWIS  LL+ PVVGTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKENEKLSHRY 73
           +KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SG911.8e-2877.78Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
P462692.6e-2773.61Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2[more]
Q9FLB74.4e-2773.61Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
XP_022961649.14.61e-46100.00cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cyto... [more]
XP_022951208.11.09e-4497.22cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cyto... [more]
XP_038886592.15.21e-4394.44cytochrome b-c1 complex subunit 8-like [Benincasa hispida][more]
XP_022131282.13.02e-4290.28cytochrome b-c1 complex subunit 8-like [Momordica charantia][more]
XP_008444338.11.23e-4191.67PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo] >KAA0061082.1 c... [more]
Match NameE-valueIdentityDescription
A0A6J1K5M62.23e-46100.00cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114925... [more]
A0A6J1HEN42.23e-46100.00cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1KUK45.28e-4597.22cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114965... [more]
A0A6J1GH365.28e-4597.22cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1BQK71.46e-4290.28cytochrome b-c1 complex subunit 8-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
Match NameE-valueIdentityDescription
AT3G10860.11.3e-2977.78Cytochrome b-c1 complex, subunit 8 protein [more]
AT5G05370.13.1e-2873.61Cytochrome b-c1 complex, subunit 8 protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890Cyt_b-c1_8coord: 1..72
e-value: 5.2E-36
score: 122.9
IPR020101Cytochrome b-c1 complex subunit 8, plantsPANTHERPTHR34559CYTOCHROME B-C1 COMPLEX SUBUNIT 8coord: 1..72
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyGENE3D1.20.5.210coord: 2..72
e-value: 2.8E-9
score: 38.9
IPR036642Cytochrome b-c1 complex subunit 8 superfamilySUPERFAMILY81508Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..66
NoneNo IPR availablePANTHERPTHR34559:SF3CYTOCHROME B-C1 COMPLEX, SUBUNIT 8coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g166060.m01Csor.00g166060.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0070469 respirasome