Csor.00g165880 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g165880
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Spermidine synthase
Location	Csor_Chr05: 31057 .. 33786 (-)
RNA-Seq Expression	Csor.00g165880
Synteny	Csor.00g165880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTGGAGGAGAATGGAAATGACAGCACACCACTGATGGAATGCCCACCAACCCAATGGAATCCAGATTTAGGAAGATACGCTCAAATATTAAATTTTGGGAATTCAATAACAAAGAGGTGAGAATGGAGGGAGCTAAAAATAGAAGAAGGGGTAAGAAGCTTAATCTGAAAACGGATCTTAAATCTTTCAAAACGTCACGCTACAGTTGGAAACGTGTAACGGTCAAATCCGGCGCCGCGCATAAGTTGTGAAGTCAACTTTCATGGCCACCGCCGTTGAAGTTGACGTATTTGGTTTCGATGCTTTTCACCCCCTACGTTACATTTACGCTCGATTCGGAGCTTTCTATGTTCATTTCCACTCCTCTCAGCCTCCTTCATCCTCATTCTCAAATTCACCTTCCTTTTACTCATATGTTTAATTTCTTTGATTCATGTTTAATCTCTCTTAATTATACTCTTCTCTCCTTATTAACCCCCAACCACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCACTACAATTCTATCAAAATTTCATACCACCGGGACAGTTACAAATTAGAAAATGAACCCAATGTGGCCTGGTGGGTTTGCATTCACTTCTGCTCTCTCTGCTTTCGAACCCGTAGTGTCTTTGCTTTGCTTCTAATTATTCTTCTGGAGTGTTTTACGTGGGGATAGGAAGATGCAGTTTATTAGTTATTTAAATGCACCAGCGTATACTTAGATCAGTATTCTAAGGCCAAATGTATATTTTCCGCTTGTTTCTGTCACTTGGTTATCTGTTTATAATATTACTTGCGTTCATAAAATTTATGTTTTTCTATTTTTTTCGTTTGATTTGGTTGCTAATAATTGTATCATAGGTTCAGCCAACATTGTCAATATGTTTAGCCTGAAATAATACGTTCCTTTAGAAATGTTATTGTGAGATTCCACGTTGGGAGAGGGGAACGAAACATTCTTTAAGGGTATGAAAACCTCTCCCTAGTACAAACATTTTAAAAACTTTGAGAACAACCTTGAAAAGGAAAGTTCAAAGAAGACAATATCTACTAGTGGTGGACACAAATGGTATCAGAGCTAGAAATCGGATGGTGTACCAGCGAGGATGCTGGCACCAAGGGAAGTGGATTGTGATATCTGGTTGTAGAGGGGAACAAAACATTCTTACAAGGGTGTAGAAAGAAACATTTCGCTGTAACGTTTTAAAAACCTTTAAAAAAGGCCCGAAAGAGAAAGTCTAAAAAACACAATATCTGCGGGTGGTGGGCTAGGCTTAACCCGCCTGGATTGAATAGATGGGGTGTATTCCAAAATTTGTAATTTGCTAATGGTTTTGTCCGTAGCTGAGGACAGGTCCACAGTTTAATTTGCATTTTCTTTTTGTCAGTTCACCTAAGTAGTTTGGATTGTCCTCTCTCTTGGGCGGTGGCGGATGTTCTTATTGGCCCTTCTTTGATGTGTATTGAATATTTATTGAATTGGGCACGCTTTTTATATCTCTCTATGAATTTCTCAGCTTGCTTAGTTGATGCTGATGTAATTTAATTCAACATTCATTTAGATCTATTGCCAACAATCAAATTTCAGGGTAGTTAGTAAATGGAGAACAAAATAGTTGAGAAGACCCCTTCTTGTGTTTTTTCGTTGAAGTGACATGAGTTCATATGAACATTGTTAAAATTGGTATTTCACTCTTTAGTTCAACATTCATTTAGATCTATTGCCATTCTCAATTTGCATGCGATTATCACATTCTTGCACACTCTCTATTGCTGGCTATGGCTTCAAATTCAAATGTGGAGCCTAGAAGTAAGAAATCCTGTGATATTTTCTTGGCCTGTAATAGATCTGTCTCACGGTGATTATGGATGTGTTCTTCCATCCTCTATTCAAACTTCAAAGAGGGGGAGTTTTGTGGAAGTCAATTTTTTGGGTAACTTTATGGGACATCTAGCTCAAGAGGAGTTGCATACATCTTTGGGATACATCTTTGAGATGGAAGGTCTAACAAGTATCTTAGTTAAAACAAATGTGGGTCTTCATTATAATCTTTCCTGCAAAATAAACAGGACAAATATGGTTTGAACTTGTCCATGGTGTTCCTCCTTAAGAAAATGCTGTTTTTCCCCCTTAGCTGTATATCCACGTGTCACACTTCGTATTGGCGATGGTAGTCAGCTATGCTTAGTTTTTTCTCCCTAGCCATGGACTTCTGCTTGGATTCTTCTTGCTTTTAAACGTTTACAGGAGTTGCATTTGTGAAGGCTGTCCCGAAGGGACTTATGATGCTATTATAGTGGATTCTTCTGATCCCATAGGTAAACCATCTGCCTGAGGGTATCTTTTCAAGTTGTAATTTTTGAGTGCATCTTCAGGTCCTGCACAACAGCTTTTTGAGAAGCCATCCATCTTTGAATCGGTAGCCAGAGCTCTTGGGCCAGGAGGCGTTGTGTGTGCACTCAGGCAGAGTACATGGCTTCAGATGCACGTTATTGGAGACATAGTGGCAAACTGTCGCCAAGTATTCAAAGGCTCGGTAAATTATGCATGGACTACAGTTCCAACATATATCCTGGGCAAGCATTTCCAGATGATTATTAACTACTCTTTTCTGCTTATAGAGATAAGATGTGATCATCATATCTGGCTGCAACGTTTCCACAACTTTTGGCAAGAAGGTGTTGTTGATTCAATAGCAAAATGA

mRNA sequence

ATGCGGTTGGAGGAGAATGGAAATGACAGCACACCACTGATGGAATGCCCACCAACCCAATGGAATCCAGATTTAGGAAGATACGCTCAAATATTAAATTTTGGGAATTCAATAACAAAGAGGAGTTGCATTTGTGAAGGCTGTCCCGAAGGGACTTATGATGCTATTATAGTGGATTCTTCTGATCCCATAGGTCCTGCACAACAGCTTTTTGAGAAGCCATCCATCTTTGAATCGGTAGCCAGAGCTCTTGGGCCAGGAGGCGTTGTGTGTGCACTCAGGCAGAGTACATGGCTTCAGATGCACGTTATTGGAGACATAGTGGCAAACTGTCGCCAAGTATTCAAAGGCTCGGTAAATTATGCATGGACTACAGTTCCAACATATATCCTGGGCAAGCATTTCCAGATGATTATTAACTACTCTTTTCTGCTTATAGAGATAAGATGTGATCATCATATCTGGCTGCAACGTTTCCACAACTTTTGGCAAGAAGGTGTTGTTGATTCAATAGCAAAATGA

Coding sequence (CDS)

ATGCGGTTGGAGGAGAATGGAAATGACAGCACACCACTGATGGAATGCCCACCAACCCAATGGAATCCAGATTTAGGAAGATACGCTCAAATATTAAATTTTGGGAATTCAATAACAAAGAGGAGTTGCATTTGTGAAGGCTGTCCCGAAGGGACTTATGATGCTATTATAGTGGATTCTTCTGATCCCATAGGTCCTGCACAACAGCTTTTTGAGAAGCCATCCATCTTTGAATCGGTAGCCAGAGCTCTTGGGCCAGGAGGCGTTGTGTGTGCACTCAGGCAGAGTACATGGCTTCAGATGCACGTTATTGGAGACATAGTGGCAAACTGTCGCCAAGTATTCAAAGGCTCGGTAAATTATGCATGGACTACAGTTCCAACATATATCCTGGGCAAGCATTTCCAGATGATTATTAACTACTCTTTTCTGCTTATAGAGATAAGATGTGATCATCATATCTGGCTGCAACGTTTCCACAACTTTTGGCAAGAAGGTGTTGTTGATTCAATAGCAAAATGA

Protein sequence

MRLEENGNDSTPLMECPPTQWNPDLGRYAQILNFGNSITKRSCICEGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVANCRQVFKGSVNYAWTTVPTYILGKHFQMIINYSFLLIEIRCDHHIWLQRFHNFWQEGVVDSIAK

Homology

[Close]

BLAST of Csor.00g165880 vs. ExPASy Swiss-Prot
Match: Q9ZTR1 (Spermidine synthase 1 OS=Pisum sativum OX=3888 GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 32  LNFGNSITKRSCICEGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVC 91
           LN G+ +       +  PEGTYDA+IVDSSDPIGPAQ+LFEKP  FESVARAL PGGVVC
Sbjct: 177 LNIGDGV----AFLKAAPEGTYDAVIVDSSDPIGPAQELFEKP-FFESVARALRPGGVVC 236

Query: 92  ALRQSTWLQMHVIGDIVANCRQVFKGSVNYAWTTVPTYILG 133
              +S WL MH+I DIV NCRQVFKGSVNYAWTTVPTY  G
Sbjct: 237 TQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSG 272

[Close]

BLAST of Csor.00g165880 vs. ExPASy Swiss-Prot
Match: O82147 (Spermidine synthase OS=Coffea arabica OX=13443 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-34
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 31  ILNFGNSITKRSCICEGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVV 90
           +L+ G+ +       +  PEGTYDAIIVDSSDPIGPAQ+LFEKP  FESVA+AL PGGVV
Sbjct: 157 VLHIGDGV----AFLKAVPEGTYDAIIVDSSDPIGPAQELFEKP-FFESVAKALRPGGVV 216

Query: 91  CALRQSTWLQMHVIGDIVANCRQVFKGSVNYAWTTVPTYILG 133
           C   +S WL MH+I DIVANCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 217 CTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSG 253

[Close]

BLAST of Csor.00g165880 vs. ExPASy Swiss-Prot
Match: Q9SMB1 (Spermidine synthase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 46  EGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIG 105
           +  PEGTYDA+IVDSSDPIGPAQ+LFEKP  F+SVARAL PGGVVC   +S WL MH+I 
Sbjct: 175 KNAPEGTYDAVIVDSSDPIGPAQELFEKP-FFQSVARALRPGGVVCTQAESIWLHMHIIE 234

Query: 106 DIVANCRQVFKGSVNYAWTTVPTYILG 133
           DIVANCRQVFKGSVNYAWTTVPTY  G
Sbjct: 235 DIVANCRQVFKGSVNYAWTTVPTYPSG 260

[Close]

BLAST of Csor.00g165880 vs. ExPASy Swiss-Prot
Match: O48659 (Spermidine synthase 2 OS=Hyoscyamus niger OX=4079 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-33
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           PEGTYDA+IVDSSDPIGPAQ+LFEKP  FESVARAL PGGVVC   +S WL MH+I DIV
Sbjct: 163 PEGTYDAVIVDSSDPIGPAQELFEKP-FFESVARALCPGGVVCTQAESIWLHMHIIEDIV 222

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 133
           +NCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 223 SNCRQIFKGSVNYAWTTVPTYPSG 245

[Close]

BLAST of Csor.00g165880 vs. ExPASy Swiss-Prot
Match: Q96556 (Spermidine synthase 1 OS=Datura stramonium OX=4076 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-33
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 50  EGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVA 109
           EGTYDA+IVDSSDPIGPAQ+LFEKP  FESVARAL PGGVVC   +S WL MH+I DIVA
Sbjct: 164 EGTYDAVIVDSSDPIGPAQELFEKP-FFESVARALRPGGVVCTQAESIWLHMHIIEDIVA 223

Query: 110 NCRQVFKGSVNYAWTTVPTYILG 133
           NCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 224 NCRQIFKGSVNYAWTTVPTYPSG 245

[Close]

BLAST of Csor.00g165880 vs. NCBI nr
Match: KAG6598201.1 (hypothetical protein SDJN03_07979, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374 bits (959), Expect = 5.45e-131
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MRLEENGNDSTPLMECPPTQWNPDLGRYAQILNFGNSITKRSCICEGCPEGTYDAIIVDS 60
           MRLEENGNDSTPLMECPPTQWNPDLGRYAQILNFGNSITKRSCICEGCPEGTYDAIIVDS
Sbjct: 1   MRLEENGNDSTPLMECPPTQWNPDLGRYAQILNFGNSITKRSCICEGCPEGTYDAIIVDS 60

Query: 61  SDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVANCRQVFKGSVN 120
           SDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVANCRQVFKGSVN
Sbjct: 61  SDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVANCRQVFKGSVN 120

Query: 121 YAWTTVPTYILGKHFQMIINYSFLLIEIRCDHHIWLQRFHNFWQEGVVDSIAK 173
           YAWTTVPTYILGKHFQMIINYSFLLIEIRCDHHIWLQRFHNFWQEGVVDSIAK
Sbjct: 121 YAWTTVPTYILGKHFQMIINYSFLLIEIRCDHHIWLQRFHNFWQEGVVDSIAK 173

[Close]

BLAST of Csor.00g165880 vs. NCBI nr
Match: GFZ00085.1 (spermidine synthase [Actinidia rufa])

HSP 1 Score: 145 bits (366), Expect = 4.03e-39
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           P+GTYDA+IVDSSDPIGPAQ+LFEKP  FESVA+ALGPGGVVC   +S WL MH+I DIV
Sbjct: 177 PQGTYDAVIVDSSDPIGPAQELFEKP-FFESVAKALGPGGVVCTQAESIWLHMHIIEDIV 236

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 132
           ANCRQVFKGSVNYAWTTVPTY  G
Sbjct: 237 ANCRQVFKGSVNYAWTTVPTYPRG 259

[Close]

BLAST of Csor.00g165880 vs. NCBI nr
Match: KJB31271.1 (hypothetical protein B456_005G183500 [Gossypium raimondii])

HSP 1 Score: 143 bits (361), Expect = 5.88e-39
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           PEGTYDAIIVDSSDPIGPAQ+LFEKP  FESVA+AL PGGVVC   +S WL MH+I DIV
Sbjct: 113 PEGTYDAIIVDSSDPIGPAQELFEKP-FFESVAKALRPGGVVCTQAESIWLHMHIIEDIV 172

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 132
           ANCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 173 ANCRQIFKGSVNYAWTTVPTYPSG 195

[Close]

BLAST of Csor.00g165880 vs. NCBI nr
Match: O82147.1 (RecName: Full=Spermidine synthase; Short=SPDSY; AltName: Full=Putrescine aminopropyltransferase [Coffea arabica] >BAA29033.1 spermidine synthase [Coffea arabica])

HSP 1 Score: 145 bits (365), Expect = 6.39e-39
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 31  ILNFGNSITKRSCICEGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVV 90
           +L+ G+ +     +    PEGTYDAIIVDSSDPIGPAQ+LFEKP  FESVA+AL PGGVV
Sbjct: 157 VLHIGDGVAFLKAV----PEGTYDAIIVDSSDPIGPAQELFEKP-FFESVAKALRPGGVV 216

Query: 91  CALRQSTWLQMHVIGDIVANCRQVFKGSVNYAWTTVPTYILG 132
           C   +S WL MH+I DIVANCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 217 CTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSG 253

[Close]

BLAST of Csor.00g165880 vs. NCBI nr
Match: XP_010251305.1 (PREDICTED: spermidine synthase 1 [Nelumbo nucifera])

HSP 1 Score: 145 bits (366), Expect = 8.00e-39
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 32  LNFGNSITKRSCICEGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVC 91
           L+ G+ +   + +    PEGTYDAIIVDSSDPIGPAQ+LFEKP  FESVARAL PGGVVC
Sbjct: 184 LHIGDGVAFLNAV----PEGTYDAIIVDSSDPIGPAQELFEKP-FFESVARALRPGGVVC 243

Query: 92  ALRQSTWLQMHVIGDIVANCRQVFKGSVNYAWTTVPTYILG 132
              +S WL MH+I DIVANCRQVFKGSVNYAWTTVPTY  G
Sbjct: 244 TQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSG 279

[Close]

BLAST of Csor.00g165880 vs. ExPASy TrEMBL
Match: A0A0E0LJL2 (PABS domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 2.27e-40
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 46  EGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIG 105
           +  PEGTYDA+IVDSSDPIGPAQ+LFEKP  F+SVARAL PGGVVC   +S WL MH+I 
Sbjct: 31  KNAPEGTYDAVIVDSSDPIGPAQELFEKP-FFQSVARALRPGGVVCTQAESIWLHMHIIE 90

Query: 106 DIVANCRQVFKGSVNYAWTTVPTYILG 132
           DIVANCRQVFKGSVNYAWTTVPTY  G
Sbjct: 91  DIVANCRQVFKGSVNYAWTTVPTYPSG 116

[Close]

BLAST of Csor.00g165880 vs. ExPASy TrEMBL
Match: A0A0V0HTV1 (Putative spermidine synthase 1-like OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 144 bits (363), Expect = 1.25e-39
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           PEGTYDA+IVDSSDPIGPAQ+LFEKP  FESVARAL PGGVVC   +S WL MH+I DIV
Sbjct: 83  PEGTYDAVIVDSSDPIGPAQELFEKP-FFESVARALRPGGVVCTQAESIWLHMHIIEDIV 142

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 132
           ANCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 143 ANCRQIFKGSVNYAWTTVPTYPSG 165

[Close]

BLAST of Csor.00g165880 vs. ExPASy TrEMBL
Match: A0A7J0FMY9 (Spermidine synthase OS=Actinidia rufa OX=165716 GN=Acr_13g0014840 PE=3 SV=1)

HSP 1 Score: 145 bits (366), Expect = 1.95e-39
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           P+GTYDA+IVDSSDPIGPAQ+LFEKP  FESVA+ALGPGGVVC   +S WL MH+I DIV
Sbjct: 177 PQGTYDAVIVDSSDPIGPAQELFEKP-FFESVAKALGPGGVVCTQAESIWLHMHIIEDIV 236

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 132
           ANCRQVFKGSVNYAWTTVPTY  G
Sbjct: 237 ANCRQVFKGSVNYAWTTVPTYPRG 259

[Close]

BLAST of Csor.00g165880 vs. ExPASy TrEMBL
Match: A0A0D2RNU7 (PABS domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G183500 PE=3 SV=1)

HSP 1 Score: 143 bits (361), Expect = 2.85e-39
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           PEGTYDAIIVDSSDPIGPAQ+LFEKP  FESVA+AL PGGVVC   +S WL MH+I DIV
Sbjct: 113 PEGTYDAIIVDSSDPIGPAQELFEKP-FFESVAKALRPGGVVCTQAESIWLHMHIIEDIV 172

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 132
           ANCRQ+FKGSVNYAWTTVPTY  G
Sbjct: 173 ANCRQIFKGSVNYAWTTVPTYPSG 195

[Close]

BLAST of Csor.00g165880 vs. ExPASy TrEMBL
Match: A0A1U7ZEQ9 (spermidine synthase 1 OS=Nelumbo nucifera OX=4432 GN=LOC104593236 PE=3 SV=1)

HSP 1 Score: 145 bits (366), Expect = 3.87e-39
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 32  LNFGNSITKRSCICEGCPEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVC 91
           L+ G+ +   + +    PEGTYDAIIVDSSDPIGPAQ+LFEKP  FESVARAL PGGVVC
Sbjct: 184 LHIGDGVAFLNAV----PEGTYDAIIVDSSDPIGPAQELFEKP-FFESVARALRPGGVVC 243

Query: 92  ALRQSTWLQMHVIGDIVANCRQVFKGSVNYAWTTVPTYILG 132
              +S WL MH+I DIVANCRQVFKGSVNYAWTTVPTY  G
Sbjct: 244 TQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSG 279

[Close]

BLAST of Csor.00g165880 vs. TAIR 10
Match: AT1G23820.1 (spermidine synthase 1 )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 50  EGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVA 109
           EG+YDA+IVDSSDPIGPA++LFEKP  F+SVARAL PGGVVC   +S WL M +I DIV+
Sbjct: 236 EGSYDAVIVDSSDPIGPAKELFEKP-FFQSVARALRPGGVVCTQAESLWLHMDIIEDIVS 295

Query: 110 NCRQVFKGSVNYAWTTVPTYILG 133
           NCR++FKGSVNYAWT+VPTY  G
Sbjct: 296 NCREIFKGSVNYAWTSVPTYPSG 317

[Close]

BLAST of Csor.00g165880 vs. TAIR 10
Match: AT1G23820.2 (spermidine synthase 1 )

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 50  EGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVA 109
           EG+YDA+IVDSSDPIGPA++LFEKP  F+SVARAL PGGVVC   +S WL M +I DIV+
Sbjct: 236 EGSYDAVIVDSSDPIGPAKELFEKP-FFQSVARALRPGGVVCTQAESLWLHMDIIEDIVS 295

Query: 110 NCRQVFKGSVNYAWTTVPTY 130
           NCR++FKGSVNYAWT+VPTY
Sbjct: 296 NCREIFKGSVNYAWTSVPTY 314

[Close]

BLAST of Csor.00g165880 vs. TAIR 10
Match: AT1G70310.1 (spermidine synthase 2 )

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 50  EGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIVA 109
           EGTYDA+IVDSSDPIGPA++LFEKP  FESV RAL PGGVVC   +S WL M +I DIV+
Sbjct: 196 EGTYDAVIVDSSDPIGPAKELFEKP-FFESVNRALRPGGVVCTQAESLWLHMDIIEDIVS 255

Query: 110 NCRQVFKGSVNYAWTTVPTYILG 133
           NCR +FKGSVNYAWT+VPTY  G
Sbjct: 256 NCRDIFKGSVNYAWTSVPTYPSG 277

[Close]

BLAST of Csor.00g165880 vs. TAIR 10
Match: AT5G53120.1 (spermidine synthase 3 )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           PEG YDAIIVDSSDP+GPA  L EKP  FE++ARAL PGGV+C + +S WL  H+I D++
Sbjct: 214 PEGKYDAIIVDSSDPVGPALALVEKP-FFETLARALKPGGVLCNMAESMWLHTHLIEDMI 273

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 133
           + CRQ FK SV+YAW++VPTY  G
Sbjct: 274 SICRQTFK-SVHYAWSSVPTYPSG 295

[Close]

BLAST of Csor.00g165880 vs. TAIR 10
Match: AT5G53120.2 (spermidine synthase 3 )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 49  PEGTYDAIIVDSSDPIGPAQQLFEKPSIFESVARALGPGGVVCALRQSTWLQMHVIGDIV 108
           PEG YDAIIVDSSDP+GPA  L EKP  FE++ARAL PGGV+C + +S WL  H+I D++
Sbjct: 214 PEGKYDAIIVDSSDPVGPALALVEKP-FFETLARALKPGGVLCNMAESMWLHTHLIEDMI 273

Query: 109 ANCRQVFKGSVNYAWTTVPTYILG 133
           + CRQ FK SV+YAW++VPTY  G
Sbjct: 274 SICRQTFK-SVHYAWSSVPTYPSG 295

The following BLAST results are available for this feature:

BLAST of Csor.00g165880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZTR1	4.0e-34	70.30	Spermidine synthase 1 OS=Pisum sativum OX=3888 GN=SPDSYN1 PE=2 SV=1	[more]
O82147	5.2e-34	68.63	Spermidine synthase OS=Coffea arabica OX=13443 PE=2 SV=1	[more]
Q9SMB1	1.2e-33	78.16	Spermidine synthase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPDSYN1 PE=2 S...	[more]
O48659	2.6e-33	79.76	Spermidine synthase 2 OS=Hyoscyamus niger OX=4079 PE=2 SV=1	[more]
Q96556	5.8e-33	80.72	Spermidine synthase 1 OS=Datura stramonium OX=4076 PE=2 SV=1	[more]

BLAST of Csor.00g165880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598201.1	5.45e-131	100.00	hypothetical protein SDJN03_07979, partial [Cucurbita argyrosperma subsp. sorori...	[more]
GFZ00085.1	4.03e-39	80.95	spermidine synthase [Actinidia rufa]	[more]
KJB31271.1	5.88e-39	80.95	hypothetical protein B456_005G183500 [Gossypium raimondii]	[more]
O82147.1	6.39e-39	68.63	RecName: Full=Spermidine synthase; Short=SPDSY; AltName: Full=Putrescine aminopr...	[more]
XP_010251305.1	8.00e-39	71.29	PREDICTED: spermidine synthase 1 [Nelumbo nucifera]	[more]

BLAST of Csor.00g165880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0LJL2	2.27e-40	78.16	PABS domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1	[more]
A0A0V0HTV1	1.25e-39	80.95	Putative spermidine synthase 1-like OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
A0A7J0FMY9	1.95e-39	80.95	Spermidine synthase OS=Actinidia rufa OX=165716 GN=Acr_13g0014840 PE=3 SV=1	[more]
A0A0D2RNU7	2.85e-39	80.95	PABS domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G18350...	[more]
A0A1U7ZEQ9	3.87e-39	71.29	spermidine synthase 1 OS=Nelumbo nucifera OX=4432 GN=LOC104593236 PE=3 SV=1	[more]

BLAST of Csor.00g165880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23820.1	1.2e-30	72.29	spermidine synthase 1	[more]
AT1G23820.2	1.6e-30	73.75	spermidine synthase 1	[more]
AT1G70310.1	1.6e-30	73.49	spermidine synthase 2	[more]
AT5G53120.1	1.0e-24	63.10	spermidine synthase 3	[more]
AT5G53120.2	1.0e-24	63.10	spermidine synthase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 39..148 e-value: 4.9E-23 score: 83.8
None	No IPR available	PFAM	PF01564	Spermine_synth	coord: 52..135 e-value: 1.4E-19 score: 70.2
None	No IPR available	PANTHER	PTHR11558:SF50	SPERMIDINE SYNTHASE-RELATED	coord: 45..137
IPR001045	Spermidine/spermine synthases	PANTHER	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	coord: 45..137
IPR030374	Polyamine biosynthesis domain	PROSITE	PS51006	PABS_2	coord: 48..146 score: 14.410736
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 50..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g165880.m02	Csor.00g165880.m02	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008295	spermidine biosynthetic process
molecular_function	GO:0004766	spermidine synthase activity
molecular_function	GO:0003824	catalytic activity