Csor.00g163560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g163560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Protein CLAVATA 3
Location	Csor_Chr13: 6340410 .. 6341355 (+)
RNA-Seq Expression	Csor.00g163560
Synteny	Csor.00g163560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCTCTAACCTCATCTTCTCCCTTCTCCTTCTCATTTTCTTCCTTTCCCACAATTTCTCTTCTGCTTCCACACTCACGCGCCGCCGCTCTGTTCCCGATACCCCGCCTCTCCTCCGAGCGCTGCAGACCCGCAAGGTAACGTTTTTGAGACAGACCTATGTAAATTCTATGTACTACTTCCTATTGAATTTTGTTGTTAGATCAACACTGCTCTCCACAATTGTATGATATTGTCCACTTTTTAAGTATAGGTTCTTATGGCCTCTACTTGGGGTTAAAGTCGCAACGTCGCATCTCATCTTATCATCTCGATCTCCATCGATATGATCTATATGTAGCAATATCCAACACGCGGGCTGGGGTGCAATACCGACACACCCGGACCGCTCGATACTGTTCTTGAAAAATTCATTTCAAAGGAAGTCGCCCGAGACACTCGTCTCAGCACGCTTGCTCATACTGTGACACACGTATGTGCCATAGGGTGGTTGGAGGTGTCCGATGTTATTTTAATTTACTCGCGGGAGGGTGATGTGGTGGCCTAGTTATTTAGATGAACATATATTGAATTTAGGCTGTCGAGGTGTCCGATGTTATTTTAATTTACTTGCCGGAGGGTGATGCAGCGGCCTAATTATTTAGATGAACACCACTCTCCACAATAACATGATATTGTCTACTTTGAGCATACGCTCTATAGGCTTTGTTTTGGACTTTTAAGAAGGCTTTGTACCGATAGAGATGAACCCAACTTTCCTCAACAAATTTGACTCATTTTTTTACGTTACAGATGCTTCGAGAGATGGTTAAGGAATTGGAAGTCGACGGCGGCGAGAGACGGCGGCCGTCGGTGGAGTGGGATCAGTTGCGGAGGGTGCCGTCCGGACCTGACCCTTTGCATCATAATGGTGGAAGCCCGAAGAAGCCTCGAACTCCTTGA

mRNA sequence

ATGGCTCCCTCTAACCTCATCTTCTCCCTTCTCCTTCTCATTTTCTTCCTTTCCCACAATTTCTCTTCTGCTTCCACACTCACGCGCCGCCGCTCTGTTCCCGATACCCCGCCTCTCCTCCGAGCGCTGCAGACCCGCAAGATGCTTCGAGAGATGGTTAAGGAATTGGAAGTCGACGGCGGCGAGAGACGGCGGCCGTCGGTGGAGTGGGATCAGTTGCGGAGGGTGCCGTCCGGACCTGACCCTTTGCATCATAATGGTGGAAGCCCGAAGAAGCCTCGAACTCCTTGA

Coding sequence (CDS)

ATGGCTCCCTCTAACCTCATCTTCTCCCTTCTCCTTCTCATTTTCTTCCTTTCCCACAATTTCTCTTCTGCTTCCACACTCACGCGCCGCCGCTCTGTTCCCGATACCCCGCCTCTCCTCCGAGCGCTGCAGACCCGCAAGATGCTTCGAGAGATGGTTAAGGAATTGGAAGTCGACGGCGGCGAGAGACGGCGGCCGTCGGTGGAGTGGGATCAGTTGCGGAGGGTGCCGTCCGGACCTGACCCTTTGCATCATAATGGTGGAAGCCCGAAGAAGCCTCGAACTCCTTGA

Protein sequence

MAPSNLIFSLLLLIFFLSHNFSSASTLTRRRSVPDTPPLLRALQTRKMLREMVKELEVDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of Csor.00g163560 vs. NCBI nr
Match: KAG6583691.1 (hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (479), Expect = 2.86e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MAPSNLIFSLLLLIFFLSHNFSSASTLTRRRSVPDTPPLLRALQTRKMLREMVKELEVDG 60
          MAPSNLIFSLLLLIFFLSHNFSSASTLTRRRSVPDTPPLLRALQTRKMLREMVKELEVDG
Sbjct: 1  MAPSNLIFSLLLLIFFLSHNFSSASTLTRRRSVPDTPPLLRALQTRKMLREMVKELEVDG 60

Query: 61 GERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
          GERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 61 GERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96

[Close]

BLAST of Csor.00g163560 vs. NCBI nr
Match: XP_038877536.1 (protein CLAVATA 3 [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.80e-24
Identity = 63/98 (64.29%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 8   FSLLLLIFFLSHNFSS------ASTLTRRRSVPDTPPLLRALQ-TRKMLREMVKELE--V 67
           FSLLLLIFFL   FSS           R R V   PP+ RALQ +RKML+EM KE+E  V
Sbjct: 16  FSLLLLIFFL---FSSDYYCCWRVARCRCRCVSGKPPVSRALQISRKMLQEMKKEMEEGV 75

Query: 68  DGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
           DG +R  P+ EW+QLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 76  DGDKRWWPAGEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110

[Close]

BLAST of Csor.00g163560 vs. NCBI nr
Match: KAE8652825.1 (hypothetical protein Csa_022700, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.94e-19
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 2   APSNLIFSLLLLIFFLSHNFSSAS------TLTRRRSVPDTPPLLRALQ-TRKMLREMVK 61
           +PS+ + SLLLL FFL+H   S+        + R R V     + RAL  +RKML EM K
Sbjct: 7   SPSSFL-SLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVEMKK 66

Query: 62  ELEVD--GGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
           E+E    GG+R     EW+QLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 67  EMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109

[Close]

BLAST of Csor.00g163560 vs. NCBI nr
Match: KAA0054350.1 (protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.63e-17
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 45 TRKMLREMVKELEVD--GGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
          +RKM+ EM KE+E    GG+R R   EW+QLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 2  SRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of Csor.00g163560 vs. NCBI nr
Match: KAG5566490.1 (hypothetical protein RHGRI_002148 [Rhododendron griersonianum])

HSP 1 Score: 59.3 bits (142), Expect = 5.34e-09
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 67 SVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
          S  WDQLR VP+GPDPLHH+GGSPKKPRTP
Sbjct: 66 SETWDQLRGVPAGPDPLHHHGGSPKKPRTP 95

[Close]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL
Match: A0A5A7UGG1 (Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001690 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.76e-17
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 45 TRKMLREMVKELEVD--GGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
          +RKM+ EM KE+E    GG+R R   EW+QLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 2  SRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL
Match: A0A1U8Q0C1 (uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.12e-09
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 44  QTRKMLR---EMVKELE-VDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
           Q+RK+L    E+ K    +D   R    V WD LRRVPSGPDPLHHNGGSPKKP+TP
Sbjct: 45  QSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSGPDPLHHNGGSPKKPQTP 100

[Close]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL
Match: A0A7J8RNZ0 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_015545 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.13e-08
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 44  QTRKMLREMVKELE--VDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRT 95
           Q RK+L   +KE    + G       VEW+ LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 60  QNRKILHADLKENNGSITGAGNMENFVEWE-LRAVPSGPDPLHHNGGSPKKPRT 112

[Close]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL
Match: A0A072UL07 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_4g051618 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.82e-08
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 67 SVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
          SV WDQLR++PSGPDPLHHNGG+PK P TP
Sbjct: 47 SVSWDQLRKIPSGPDPLHHNGGTPK-PETP 75

[Close]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL
Match: A0A7J8WB42 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_029119 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.87e-08
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 44  QTRKMLREMVKELE--VDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRT 95
           Q RK+L   +KE    + G       VEW+ LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 84  QNRKILHADLKENNGSITGAGNMENFVEWE-LRAVPSGPDPLHHNGGSPKKPRT 136

The following BLAST results are available for this feature:

BLAST of Csor.00g163560 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g163560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583691.1	2.86e-60	100.00	hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038877536.1	2.80e-24	64.29	protein CLAVATA 3 [Benincasa hispida]	[more]
KAE8652825.1	3.94e-19	54.81	hypothetical protein Csa_022700, partial [Cucumis sativus]	[more]
KAA0054350.1	3.63e-17	72.22	protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucu...	[more]
KAG5566490.1	5.34e-09	83.33	hypothetical protein RHGRI_002148 [Rhododendron griersonianum]	[more]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGG1	1.76e-17	72.22	Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00...	[more]
A0A1U8Q0C1	4.12e-09	59.65	uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329...	[more]
A0A7J8RNZ0	1.13e-08	59.26	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_015545 PE=4 SV...	[more]
A0A072UL07	1.82e-08	80.00	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_4g051618 P...	[more]
A0A7J8WB42	1.87e-08	59.26	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_029119 PE=4...	[more]

BLAST of Csor.00g163560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
IPR039818	CLAVATA3	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 7..96
IPR044962	CLV3/ESR signal peptide family	PANTHER	PTHR36349	PROTEIN CLAVATA 3	coord: 7..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g163560.m01	Csor.00g163560.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
molecular_function	GO:0033612	receptor serine/threonine kinase binding