Csor.00g163470 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g163470
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Protein GL2-INTERACTING REPRESSOR 2
Location	Csor_Chr13: 6423850 .. 6425986 (+)
RNA-Seq Expression	Csor.00g163470
Synteny	Csor.00g163470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTGATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGTAAGTAAACCAAGTTCTCATTTTTTAAGTCGTATATAGGCATATTTCTTTCCCAACTGTTGTTTTCGGAAACTTCTGGATAGGTATTCCACGTCTGAACGGAATTCTTTTTGGTTAAAGAATCTCTTTCAAGTTGCTCTGGAACAATTAAGAGATCTAAAAGGCCGTTTGAATCCTTGGACTTTCCATAGGGAGCTTGACCTTGCCAAAAGTAGGTCATAGGAGCATATGAGTGACCTATTTTTGAGTCTCGAAGCAATATTTTCCTTAAATGCCTATCCAGTTTATTTCGAACATCTCATTTTTCTCCTGAGCCAAATCCTTATTAACCTCGATTTCTTATCTTTTCTTTTTCGAACCTATTCTATTGGTCATGCTGAATTTGACATCCCTTATCTCTTAAAGCAACAAGAAAGGAGTAGGATGCATGAACCTCCTAACATGTTTTATTGTTGCATTAAATGATGGGCGGTTGGTTGCGTTTTAGGGAATGTCATTTTGAAACATGTGATTTAGATGTCAAGACAATGGACATCAACTCTTGCCTAGCACGCCAAATGACATAATAATTGGTGTAATAAAGTAGGGAGCAAATCATTTAAAGCAAATCTTTCAGCATATGGAATGATTCTGTTCTTTGTTAGAACCCGAAAACTGAACGAAGCTCCTTAACGAACTCATACCATAAACACTCACTCAATTGCTTATTAACATACCTAACCAACTTTGCTTTGATGAGGAATGCTTACACGCATCTTTGTGGCCATAATATGCTCCTCTTGTTCAATAATACCACGTCTCTTAACATGGTCCAAGCTAGAGGTTGATGTTCATATCTATACGAGTCTAGTACCAAACAAGAAAAATTAAATGTATAAATTGATAAGACAATGAAAATTAATTTTCTTATAATTAATGATATAATTTTTTTCCAAAAAATGAATTTGATACGTTTCTATTCTAATAGTTTGTTTTTTCCTTTTCAAACATTTTGAATATTCTTTTTTGTTGTTGCCGTTGTGTTTTATAGTCCTCGAACTTTCAATTATGTAATGGATTAGTCTTGCACTGGATCCATCCGACTCAAAATCCAATGAATCGATAGTTAACCATTTTTTTAGTGATTGCCATCGCAAAGCTAGTCGATGCCCGCTGTAATGGTTGAAAATATCCAAACCTGCTTACCCACCCCACCTCATACGACTAGTTTGGGGGGAGGGGTTGGTTGTTCGCCTTTTGGAGACACCTAAAAACCTCACATTTGAAGGAAGCATAGAAAATTCTCAGTGCAAGAATTAGGATTATTGTACCTATCATAATCCAATACGTTCTTTTATGAAAATTTCAATTTTTTTACACGATGTCCAATAAATACGTCAATTTTGAAAAATTCAAACAAATTCAAGGTCAAACTATTTTTTTTTTAAAAGATGCGAAAAACACCTCAATTAAATAAGATGAACTCGAATTTTGATTTGATTTGTCGAATGATTGGTGGTAGGTCACTGAACTTGATATGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTATCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGGTCAATGTTCAAACTTTGTATTAAATGATAATTTAGACATTGTGAATTGTATACTCCATGTTTGGCCGTCTTTCATCTCTTATAAATCATATACAGCTTCCAATTGTTGATACAAGATTTCATCCTTCAATTCTTCCTTCTTCTTCTTCTTCTTCTTTTCTCCGTTTTTCCATTGAAGAACTCTAAATTATGGGTCGAAATTTCAACCATCCGAAGTCAGAACCGATACTGCAAGATTTGTTTTTGGCAGGATCTAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

mRNA sequence

ATGAAGCCTGATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGATCTAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

Coding sequence (CDS)

ATGAAGCCTGATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGATCTAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

Protein sequence

MKPDDAAARSCSIFVERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKNLVDMSIDVAK

Homology

[Close]

BLAST of Csor.00g163470 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 3  PDDAAARSCSIFVERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 62
          P+ +   S S  V   +++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 33 PNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of Csor.00g163470 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 22  TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 71
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

[Close]

BLAST of Csor.00g163470 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165 bits (418), Expect = 2.27e-51
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKPDDAAARSCSIFVERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLL 60
          MKPDDAAARSCSIFVERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLL
Sbjct: 1  MKPDDAAARSCSIFVERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLL 60

Query: 61 DVHNLANQASKKNLVDMSIDVAK 83
          DVHNLANQASKKNLVDMSIDVAK
Sbjct: 61 DVHNLANQASKKNLVDMSIDVAK 83

[Close]

BLAST of Csor.00g163470 vs. NCBI nr
Match: TYH76956.1 (hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum])

HSP 1 Score: 61.6 bits (148), Expect = 5.97e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVLLGC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEYDTGSSSEATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. NCBI nr
Match: KAB2034830.1 (hypothetical protein ES319_D04G111100v1 [Gossypium barbadense] >PPD96492.1 hypothetical protein GOBAR_DD06479 [Gossypium barbadense] >TYG73650.1 hypothetical protein ES288_D04G118600v1 [Gossypium darwinii])

HSP 1 Score: 60.5 bits (145), Expect = 1.69e-09
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. NCBI nr
Match: KJB53577.1 (hypothetical protein B456_009G398500 [Gossypium raimondii] >MBA0567134.1 hypothetical protein [Gossypium lobatum] >MBA0596680.1 hypothetical protein [Gossypium raimondii] >MBA0866608.1 hypothetical protein [Gossypium schwendimanii] >TYI87103.1 hypothetical protein E1A91_D04G113400v1 [Gossypium mustelinum])

HSP 1 Score: 60.5 bits (145), Expect = 1.69e-09
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. NCBI nr
Match: MBA0746816.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 60.5 bits (145), Expect = 1.69e-09
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDAGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. ExPASy TrEMBL
Match: A0A5D2LD87 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.89e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVLLGC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEYDTGSSSEATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. ExPASy TrEMBL
Match: A0A0D2Q5L5 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G398500 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.18e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. ExPASy TrEMBL
Match: A0A7J9CEH7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_009299 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.18e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDAGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. ExPASy TrEMBL
Match: A0A7J9M6N6 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_022832 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.18e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. ExPASy TrEMBL
Match: A0A5J5RUL1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D04G111100v1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.18e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 15  VERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQASKK 72
           +E  +  + +ATT+ MVL+GC +CLMYVM S+ D KCPKC +T LLD +++ A  AS K
Sbjct: 47  MEDDTGSSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

[Close]

BLAST of Csor.00g163470 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-08
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 3  PDDAAARSCSIFVERSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 62
          P+ +   S S  V   +++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 33 PNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of Csor.00g163470 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 22  TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 71
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

The following BLAST results are available for this feature:

BLAST of Csor.00g163470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN4	1.3e-06	47.46	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FNI1	3.8e-06	58.00	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]

BLAST of Csor.00g163470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583700.1	2.27e-51	100.00	hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYH76956.1	5.97e-10	52.54	hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum]	[more]
KAB2034830.1	1.69e-09	50.85	hypothetical protein ES319_D04G111100v1 [Gossypium barbadense] >PPD96492.1 hypot...	[more]
KJB53577.1	1.69e-09	50.85	hypothetical protein B456_009G398500 [Gossypium raimondii] >MBA0567134.1 hypothe...	[more]
MBA0746816.1	1.69e-09	50.85	hypothetical protein [Gossypium gossypioides]	[more]

BLAST of Csor.00g163470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2LD87	2.89e-10	52.54	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 P...	[more]
A0A0D2Q5L5	8.18e-10	50.85	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G398500 PE=4 ...	[more]
A0A7J9CEH7	8.18e-10	50.85	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_009299 PE=4 ...	[more]
A0A7J9M6N6	8.18e-10	50.85	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_022832 PE=4...	[more]
A0A5J5RUL1	8.18e-10	50.85	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D04G111100v1 PE...	[more]

BLAST of Csor.00g163470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11600.1	9.3e-08	47.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G06270.1	2.7e-07	58.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177:SF51	GB\|AAF02129.1	coord: 18..73
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 18..73
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..35 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g163470.m01	Csor.00g163470.m01	mRNA