Csor.00g161760 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g161760
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 7937590 .. 7937916 (-)
RNA-Seq ExpressionCsor.00g161760
SyntenyCsor.00g161760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTGCAAATTGTACAGTAACAGAAACTTGGTGACCACTCTAGAATCCTCAACCGAAGCCGGTTTCGCAACAAAACAAAGTGGTTTTGGGCCTCATCCGAAGCTTCAAATCAGCGCCAACGCTTCCCCCAAGATTTCACCAATCTTTAATTTACAATTAGAAGAAAAACCCAGCAGATTGAGGTTCACAAAACCCAAGTCCAGGCCCCGAGATTACAGATTCTCAAAGGGTTCTCGAACTGGGATTACTACAGAGTTAAAGATCCAGAAACGCCAAGGAACCACCAGATCTTCAGGTAAGAACATGAAAGCTTGCGATATTTAG

mRNA sequence

ATGAGCTGCAAATTGTACAGTAACAGAAACTTGGTGACCACTCTAGAATCCTCAACCGAAGCCGGTTTCGCAACAAAACAAAGTGGTTTTGGGCCTCATCCGAAGCTTCAAATCAGCGCCAACGCTTCCCCCAAGATTTCACCAATCTTTAATTTACAATTAGAAGAAAAACCCAGCAGATTGAGGTTCACAAAACCCAAGTCCAGGCCCCGAGATTACAGATTCTCAAAGGGTTCTCGAACTGGGATTACTACAGAGTTAAAGATCCAGAAACGCCAAGGAACCACCAGATCTTCAGGTAAGAACATGAAAGCTTGCGATATTTAG

Coding sequence (CDS)

ATGAGCTGCAAATTGTACAGTAACAGAAACTTGGTGACCACTCTAGAATCCTCAACCGAAGCCGGTTTCGCAACAAAACAAAGTGGTTTTGGGCCTCATCCGAAGCTTCAAATCAGCGCCAACGCTTCCCCCAAGATTTCACCAATCTTTAATTTACAATTAGAAGAAAAACCCAGCAGATTGAGGTTCACAAAACCCAAGTCCAGGCCCCGAGATTACAGATTCTCAAAGGGTTCTCGAACTGGGATTACTACAGAGTTAAAGATCCAGAAACGCCAAGGAACCACCAGATCTTCAGGTAAGAACATGAAAGCTTGCGATATTTAG

Protein sequence

MSCKLYSNRNLVTTLESSTEAGFATKQSGFGPHPKLQISANASPKISPIFNLQLEEKPSRLRFTKPKSRPRDYRFSKGSRTGITTELKIQKRQGTTRSSGKNMKACDI
Homology
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BLAST of Csor.00g161760 vs. NCBI nr
Match: KAG6583870.1 (hypothetical protein SDJN03_19802, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214 bits (544), Expect = 8.31e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MSCKLYSNRNLVTTLESSTEAGFATKQSGFGPHPKLQISANASPKISPIFNLQLEEKPSR 60
           MSCKLYSNRNLVTTLESSTEAGFATKQSGFGPHPKLQISANASPKISPIFNLQLEEKPSR
Sbjct: 1   MSCKLYSNRNLVTTLESSTEAGFATKQSGFGPHPKLQISANASPKISPIFNLQLEEKPSR 60

Query: 61  LRFTKPKSRPRDYRFSKGSRTGITTELKIQKRQGTTRSSGKNMKACDI 108
           LRFTKPKSRPRDYRFSKGSRTGITTELKIQKRQGTTRSSGKNMKACDI
Sbjct: 61  LRFTKPKSRPRDYRFSKGSRTGITTELKIQKRQGTTRSSGKNMKACDI 108

The following BLAST results are available for this feature:
BLAST of Csor.00g161760 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g161760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583870.18.31e-70100.00hypothetical protein SDJN03_19802, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g161760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g161760 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g161760.m01Csor.00g161760.m01mRNA