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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGAATTCCCTGAACCTCCTCTCGACCCTTCCCCTGTCTTCACCACGCGTGGCTTCACCGCCGACGGATCCATCGCCGCCGGACGTCGTGATTGGCTTAGATGCACCTGGTTTTCGCTCAGTTTTCTCACGTCTATCACTTCTAGGCTCCGTCCACCACCCTTGCTTGGACGACGGTGGACCCCTTCCATCGCCAGGGTTTGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTATATATATATATATATATATATATATATATATGGCCTTGTAAGAGGTAAGAGAAGAGCAGAGAGGGAAACCTGAGAAGAGAGCCCTGATTATGGGGTTTCTTATTCATTTATATACCTTTTCTTCCCCCTTCTTTTTCTATCAGTTTGTTGCCTCTTCCTTCCTAATTATGGACAATTTTTAACCCAAAACATTATTTCTTTTTTACTTTTTTTTTTTTTTTTTTTTTTAATTCAATACAGAAAAGTTTATTTAACTCCCAACCAACCTGGCTAGGAACAGACATTATACTTAAATTCAATCTGGCAAGAAGGGGAGATTATATTTTTCGTCTCACTGTAATGAACATAGTAATATATACTTTTTATATTACTGGAATGTTTAAATTTTTTTAAAAAGAACAATTTTTTAAATATTATATTCCTTTAAATGGAAATTTTAGACCCCAAACTTTTAAAATTGGTTGGAGCAGAGAGAATTGAAGAACAGTTGTAAGTAGAATAGGGTGTTTTTTTAGGGAGGGGAATGATTAAGTATCAAAATCAAGAAAATAATAGAGGGGCTAACATTGAAAAGTGATTAGAAGACTTTTTCGTTTAGGTTTAACTACTAATTAACCATTTATGAATGTCTTGAATTTGTATTTAATAGCATTTATTAGTAATTTAGTTTGTTGAACTTTATTATGTTAGGATTATCTTGTGGACGGACATGATATGTAATATTCAATTTTAAAATCATGGTGGAATACAAAAACCTTATGTTTCTTTCAAAGCTTGCTTTAGGTTGATGTTAAAAATCGATTCATTAGATTAGCCATGATCAAGCTAATTCTGGAGTGAGTCGTCTTGGTATCTAAGAGAGATCATCATAGATTTCAAATTCGATCTAAGAGTCATTCATCTTTTTAACCAATTCTTTGTTGAATCAATCTGTTAAGTTAGTTTTTTTACAAGGATTTTAGAAAGATCTCTAATGCATTGTATAGTGCGAAGAGTACATGAAATTAAATAAGTACTTCAAACATAAATGTATTTGTTTTCTTCCCGTTTAGATTATTTTAAAATAAAAAGTATTAAATTCGAACATTTTTATTTATTTATTTATTTATTATTATTATTATTTTTTTTTTGGTAATAATGAATTTACAAATATTCGGAAGAAAATCACTTGACCGGATGATAATTAGGATGGCGTCGGGTTGGGGCCTTGGCAACACTGTACTTGTTCATCTCAAGGAGCGGCACCTCCGGTCTCCGATAGGTATGTTGCCATTTCTAAGATATTAACATTTCTGCAGTTTTCACTTAGTTCACGATTTTGCCTTACGAAACAGTGCTTAAGTCTTATCGGAAGAGAGAAGTTGTATAA mRNA sequence ATGAATTCCCTGAACCTCCTCTCGACCCTTCCCCTGTCTTCACCACGCGTGGCTTCACCGCCGACGGATCCATCGCCGCCGGACGTCGTGATTGGCTTAGATGCACCTGGTTTTCGCTCAGTTTTCTCACGTCTATCACTTCTAGGCTCCGTCCACCACCCTTGCTTGGACGACGGTGGACCCCTTCCATCGCCAGGGATGGCGTCGGGTTGGGGCCTTGGCAACACTGTACTTGTTCATCTCAAGGAGCGGCACCTCCGGTCTCCGATAGTGCTTAAGTCTTATCGGAAGAGAGAAGTTGTATAA Coding sequence (CDS) ATGAATTCCCTGAACCTCCTCTCGACCCTTCCCCTGTCTTCACCACGCGTGGCTTCACCGCCGACGGATCCATCGCCGCCGGACGTCGTGATTGGCTTAGATGCACCTGGTTTTCGCTCAGTTTTCTCACGTCTATCACTTCTAGGCTCCGTCCACCACCCTTGCTTGGACGACGGTGGACCCCTTCCATCGCCAGGGATGGCGTCGGGTTGGGGCCTTGGCAACACTGTACTTGTTCATCTCAAGGAGCGGCACCTCCGGTCTCCGATAGTGCTTAAGTCTTATCGGAAGAGAGAAGTTGTATAA Protein sequence MNSLNLLSTLPLSSPRVASPPTDPSPPDVVIGLDAPGFRSVFSRLSLLGSVHHPCLDDGGPLPSPGMASGWGLGNTVLVHLKERHLRSPIVLKSYRKREVV
Homology
BLAST of Csor.00g159900 vs. NCBI nr
Match: KAG6579720.1 (hypothetical protein SDJN03_24168, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 206 bits (525), Expect = 3.94e-67 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 Query: 1 MNSLNLLSTLPLSSPRVASPPTDPSPPDVVIGLDAPGFRSVFSRLSLLGSVHHPCLDDGG 60 MNSLNLLSTLPLSSPRVASPPTDPSPPDVVIGLDAPGFRSVFSRLSLLGSVHHPCLDDGG Sbjct: 1 MNSLNLLSTLPLSSPRVASPPTDPSPPDVVIGLDAPGFRSVFSRLSLLGSVHHPCLDDGG 60
Query: 61 PLPSPGMASGWGLGNTVLVHLKERHLRSPIVLKSYRKREVV 101 PLPSPGMASGWGLGNTVLVHLKERHLRSPIVLKSYRKREVV Sbjct: 61 PLPSPGMASGWGLGNTVLVHLKERHLRSPIVLKSYRKREVV 101
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6579720.1 | 3.94e-67 | 100.00 | hypothetical protein SDJN03_24168, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..16 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..29 |
Relationships
The following mRNA feature(s) are a part of this gene:
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