Csor.00g159360 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g159360
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 7906068 .. 7908836 (-)
RNA-Seq ExpressionCsor.00g159360
SyntenyCsor.00g159360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATTATAAGGAAGTGATTGTGAACCTCACTACTGAACCGTCACCTGATTTCACTTCTCTACCAATTCTCCTCGCCCTATTCATTCTGTCTGCTTTTCCTCTATCTATTCCTGACCTGATTGAAGAAGGTAAAGCTCATTGTATTGTCGGTCTCATTGCTTCCGGTCTCATTGCTGAGCTATTTCACCTTTACAGGGGAGGAAAGAAAGAAAGAAAGACGAAAGAAACCGACACCTCTTCGCCGGTCTCAGGGCTGAACACCTCTCCGGTTTCGCGGTTGAACCTCTTGGTCTCAGGGTTGAACCCCTTCCCCACTAACTCCTGCTGGAATGAGTGTGCCTCGAAGGATTTCTACGCTTTCCGAAAAGAATCTCTCTACTCTAATCATCCGGAAGAAAATGAGCTTCCACAATGGACCGGAACGTGGAGGATGTGGGTCCTTTCTCTTTTAGATCTTGGATCATCAAGTTGCTGCAGCATTATTCCATTTCCCTTTTGTCGATCATGAGGACATCTGACGGCCGGTTATCGTCGTTGCCTAAACTAAAGGACTCCTCTTTCTCTATTTCGTTTGGTCATTAAAAAAAGCAAAAATGGCTGGTGGTGTCGATACAATTCTTTCTTATATCTGGATGGCGAGATAATTCCATCTTGAAAAGAGAAGCAGCCTGGTCCCGGAGTTCTCGGAGCTGAAGATCCCTCGATTCATTCAAACTCCAGTTGTCTAAACTCTTGTTCTTGTCTGACTTGCGATTGCAAGTTTCTTCGTAGTGCCAATAGTCTCCTTTTTTGTCCCACCGAATCAAGATTGAATCCTTGTCTTCGACTGTCACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGATGAGCTTGAGTATCAGGCGTCTCAGGGGGCGAAGGAGTCAGAGGTGTCGGGGGTACTTGCTTGTGCGCTTCTAACGAGGATACCTCATCGAGATCCTGAGCATTCTTTGGTAAAGTCAAGAGTTCAGTGTGTCCCCGAGGATTTGTTATCCGATCCAGATACACTCCAAATGAGTAAGGCACCATCCCAAGCAGGAAACTAAGTCGACGCGAAGAAGCCAACAAGAAAGATGATACAGTATATGTGTTTTCAGAAGTGAAGGAAGTGGACTTTTCTTTGATTTGCGGATCGAACAAAATAGACGAAAAAGAAAGATCAAGCCCCGTGACATTCATTTCATTTCTTTTGTGATCAGCCAACCAAAAGACAATGAGAGAACGGCCAATTAAAGGGAGAGCACGTCGTTACTTACGTGACGGCACTTTCTCTTTCATTCAGGCACCATGAATTAGCTCACTCTTTGGAATTGGAATTTCTTTCTTCACCGGGCTTGGACCATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTTACCGTAGTGCCCGGTTTATCTTTCTTTCCGATTGATGAACAAGAAGGAAAAGATCACTATCACTATTGGATTTTGTGACTCGCCCCCGGCTACGTGTCCTTTCTTTGGACCCTTCGCCACCAGTGGAAGCAAGCTAGCCCCCTTTGTTGGTTGCCCCTTTCTTTCCCCTTTCTTTGATTGAATAAAAGGTCAGCATTCAAGCCCAGCAAGAGGAGCTGAAGATAGCTGAAGATATCATTCGACAACCTTTCGCCTTAAGCTGACTGACTAAGCAACCGTAGGCTTGGGCTCGAAAGGGATGTTGCAACTTGCGGGAAAGCCACGATCATACTCGACTCTATCTAATAAGGGCGTATTAGAGTGGCGTTAGCTAGAAAGATTGCAGGGCGTTGCGTTGGTTGGTTGGTTGAGGCTAGAATCTCGAAAGGTCTCAACGGGTGACTGATTAGTCAAGCTTTTGCTTTTGACTGATCTTTCTTTGAAGCCAGCGGCGCTAGCCCGCTTCGCTTTTGTTAGGAGTAGGTGCTTCCCCTTCCCTTTCCCTTTCCCTTAGTTAGTTGGGTTGTGGGAAGGAAGAGGGCATTTGCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGGCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGTGACACGGAAGTCATGGGTGAGACTTGGTCCGATGCTTCGGGCGAAACCCATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTCTTTGTTTCGGAGCAGGTTTTGGCAGGGCGTACTAAACCCACTTCGTACCACACCACCGGGTGGCTCGCCTGAATGCCGAGTCTTTTTAGTAAAGCGCGCTAGCAGCAATCAAACTAAAGCGCACACTCGAAAGTGCTTCGTTCGAAAGGATCAGGCTCCCAGATTACTGACAGCACTGCTACGTGCTGGCACTCAATTAGTCGCGCTGGCACGTCACTCGGCTCCTCGGCGAACTTCGGTTGCAAAGACTTGA

mRNA sequence

ATGAGTTATTATAAGGAAGTGATTGTGAACCTCACTACTGAACCGTCACCTGATTTCACTTCTCTACCAATTCTCCTCGCCCTATTCATTCTGTCTGCTTTTCCTCTATCTATTCCTGACCTGATTGAAGAAGGTAAAGCTCATTGTATTGTCGGTCTCATTGCTTCCGGTCTCATTGCTGAGCTATTTCACCTTTACAGGGGAGGAAAGAAAGAAAGAAAGACGAAAGAAACCGACACCTCTTCGCCGGGCGTACTAAACCCACTTCGTACCACACCACCGGGTGGCTCGCCTGAATGCCGAGTCTTTTTAGTAAAGCGCGCTAGCAGCAATCAAACTAAAGCGCACACTCGAAAGTGCTTCGTTCGAAAGGATCAGGCTCCCAGATTACTGACAGCACTGCTACGTGCTGGCACTCAATTAGTCGCGCTGGCACGTCACTCGGCTCCTCGGCGAACTTCGGTTGCAAAGACTTGA

Coding sequence (CDS)

ATGAGTTATTATAAGGAAGTGATTGTGAACCTCACTACTGAACCGTCACCTGATTTCACTTCTCTACCAATTCTCCTCGCCCTATTCATTCTGTCTGCTTTTCCTCTATCTATTCCTGACCTGATTGAAGAAGGTAAAGCTCATTGTATTGTCGGTCTCATTGCTTCCGGTCTCATTGCTGAGCTATTTCACCTTTACAGGGGAGGAAAGAAAGAAAGAAAGACGAAAGAAACCGACACCTCTTCGCCGGGCGTACTAAACCCACTTCGTACCACACCACCGGGTGGCTCGCCTGAATGCCGAGTCTTTTTAGTAAAGCGCGCTAGCAGCAATCAAACTAAAGCGCACACTCGAAAGTGCTTCGTTCGAAAGGATCAGGCTCCCAGATTACTGACAGCACTGCTACGTGCTGGCACTCAATTAGTCGCGCTGGCACGTCACTCGGCTCCTCGGCGAACTTCGGTTGCAAAGACTTGA

Protein sequence

MSYYKEVIVNLTTEPSPDFTSLPILLALFILSAFPLSIPDLIEEGKAHCIVGLIASGLIAELFHLYRGGKKERKTKETDTSSPGVLNPLRTTPPGGSPECRVFLVKRASSNQTKAHTRKCFVRKDQAPRLLTALLRAGTQLVALARHSAPRRTSVAKT
Homology
[Close]
BLAST of Csor.00g159360 vs. NCBI nr
Match: KAG6590353.1 (hypothetical protein SDJN03_15776, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (788), Expect = 2.10e-105
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MSYYKEVIVNLTTEPSPDFTSLPILLALFILSAFPLSIPDLIEEGKAHCIVGLIASGLIA 60
           MSYYKEVIVNLTTEPSPDFTSLPILLALFILSAFPLSIPDLIEEGKAHCIVGLIASGLIA
Sbjct: 1   MSYYKEVIVNLTTEPSPDFTSLPILLALFILSAFPLSIPDLIEEGKAHCIVGLIASGLIA 60

Query: 61  ELFHLYRGGKKERKTKETDTSSPGVLNPLRTTPPGGSPECRVFLVKRASSNQTKAHTRKC 120
           ELFHLYRGGKKERKTKETDTSSPGVLNPLRTTPPGGSPECRVFLVKRASSNQTKAHTRKC
Sbjct: 61  ELFHLYRGGKKERKTKETDTSSPGVLNPLRTTPPGGSPECRVFLVKRASSNQTKAHTRKC 120

Query: 121 FVRKDQAPRLLTALLRAGTQLVALARHSAPRRTSVAKT 158
           FVRKDQAPRLLTALLRAGTQLVALARHSAPRRTSVAKT
Sbjct: 121 FVRKDQAPRLLTALLRAGTQLVALARHSAPRRTSVAKT 158

[Close]
BLAST of Csor.00g159360 vs. NCBI nr
Match: PPD93439.1 (hypothetical protein GOBAR_DD09636 [Gossypium barbadense])

HSP 1 Score: 82.0 bits (201), Expect = 8.48e-15
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 102 VFLVKRASSNQTKAHTRKCFVRKDQAPRLLTALLRAGTQLVALARHSAPRRTSVAKT 158
           + LVKRASSNQTKAHTRK F RK  AP LLTA LRAGTQLVALARHSAPR TSVAKT
Sbjct: 35  MLLVKRASSNQTKAHTRKGF-RKAPAPFLLTAQLRAGTQLVALARHSAPRLTSVAKT 90

[Close]
BLAST of Csor.00g159360 vs. NCBI nr
Match: GFA02467.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 50.8 bits (120), Expect = 5.90e-04
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 122 VRKDQAPRLLTALLRAGTQLVALARHSAPRRTSVAKT 158
           +RK  A  LLTA LRAGTQLVALARHSAPR TS AKT
Sbjct: 102 LRKAPATFLLTAQLRAGTQLVALARHSAPRLTSAAKT 138

The following BLAST results are available for this feature:
BLAST of Csor.00g159360 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g159360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6590353.12.10e-105100.00hypothetical protein SDJN03_15776, partial [Cucurbita argyrosperma subsp. sorori... [more]
PPD93439.18.48e-1584.21hypothetical protein GOBAR_DD09636 [Gossypium barbadense][more]
GFA02467.15.90e-0478.38hypothetical protein [Tanacetum cinerariifolium][more]
BLAST of Csor.00g159360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g159360 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g159360.m01Csor.00g159360.m01mRNA